fix(permissions): added a common way to update private flag via repo model...

fix(permissions): added a common way to update private flag via repo model - this allows to have a one and only one way to control the flag with the business logic shared - added test for that - changed view to use this method instead of DB update and custom permissions flush - fixed a case when update of repo settings didn't flush permissions actually while it should when private flag changed

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Code Review

|RCE| provides two ways in which you can review code. You can review |prs| or commits. To better understand |prs|, see the :ref:`pull-requests-ref` and :ref:`collaborate-ref` sections. For more information about why code review matters, see these posts on the topic:

You can also use the |RCE| API set up continuous integration servers to leave comments from a test suite. See the :ref:`api` and :ref:`extensions-hooks-ref` sections for examples on how to set this up.

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