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permissions-summary: skip branch permission entries that are leaking private repository names, and fix counters.

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             hg_diff_copy_and_chmod_file.diff
        
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      diff --git a/file3 b/file4

      old mode 100644

      new mode 100755

      copy from file3

      copy to file4

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				diff --git a/file3 b/file4
				old mode 100644
				new mode 100755
				copy from file3
				copy to file4