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commits: detect missing commits on diffsets from new PR ancestor logic....

commits: detect missing commits on diffsets from new PR ancestor logic. - this would not crash the server and allow people to update some old PRs - fixes

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store methods
file_store_add (EE only)

file_store_add_with_acl (EE only)

file_store_get_info (EE only)

file_store_add_metadata (EE only)

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