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add checkpoint API to FileNBManager
add checkpoint API to FileNBManager

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filenbmanager.py
323 lines | 12.5 KiB | text/x-python | PythonLexer
Brian E. Granger
More review changes....
r4609 """A notebook manager that uses the local file system for storage.
Authors:
* Brian Granger
"""
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r4484 #-----------------------------------------------------------------------------
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r8180 # Copyright (C) 2011 The IPython Development Team
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r4484 #
# Distributed under the terms of the BSD License. The full license is in
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r4609 # the file COPYING, distributed as part of this software.
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r4484 #-----------------------------------------------------------------------------
#-----------------------------------------------------------------------------
# Imports
#-----------------------------------------------------------------------------
import datetime
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r6030 import io
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r4484 import os
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r4624 import glob
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r10497 import shutil
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r4484
from tornado import web
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r8194 from .nbmanager import NotebookManager
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r4484 from IPython.nbformat import current
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r8180 from IPython.utils.traitlets import Unicode, Dict, Bool, TraitError
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r4484
#-----------------------------------------------------------------------------
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r5758 # Classes
#-----------------------------------------------------------------------------
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r4484
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r8194 class FileNotebookManager(NotebookManager):
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save_script = Bool(False, config=True,
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r5760 help="""Automatically create a Python script when saving the notebook.
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r5653
Matthias BUSSONNIER
remove references to loadpy...
r6765 For easier use of import, %run and %load across notebooks, a
Fernando Perez
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r5758 <notebook-name>.py script will be created next to any
<notebook-name>.ipynb on each save. This can also be set with the
short `--script` flag.
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r5653 """
)
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r10497 checkpoint_dir = Unicode(config=True,
help="""The location in which to keep notebook checkpoints
By default, it is notebook-dir/.ipynb_checkpoints
"""
)
def _checkpoint_dir_default(self):
return os.path.join(self.notebook_dir, '.ipynb_checkpoints')
def _checkpoint_dir_changed(self, name, old, new):
"""do a bit of validation of the checkpoint dir"""
if not os.path.isabs(new):
# If we receive a non-absolute path, make it absolute.
abs_new = os.path.abspath(new)
self.checkpoint_dir = abs_new
return
if os.path.exists(new) and not os.path.isdir(new):
raise TraitError("checkpoint dir %r is not a directory" % new)
if not os.path.exists(new):
self.log.info("Creating checkpoint dir %s", new)
try:
os.mkdir(new)
except:
raise TraitError("Couldn't create checkpoint dir %r" % new)
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r4484 filename_ext = Unicode(u'.ipynb')
# Map notebook names to notebook_ids
rev_mapping = Dict()
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r10497
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r8180 def get_notebook_names(self):
"""List all notebook names in the notebook dir."""
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r4623 names = glob.glob(os.path.join(self.notebook_dir,
'*' + self.filename_ext))
names = [os.path.splitext(os.path.basename(name))[0]
for name in names]
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r8180 return names
def list_notebooks(self):
"""List all notebooks in the notebook dir."""
names = self.get_notebook_names()
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r4623
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r4484 data = []
for name in names:
if name not in self.rev_mapping:
notebook_id = self.new_notebook_id(name)
else:
notebook_id = self.rev_mapping[name]
data.append(dict(notebook_id=notebook_id,name=name))
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r4488 data = sorted(data, key=lambda item: item['name'])
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r4484 return data
def new_notebook_id(self, name):
"""Generate a new notebook_id for a name and store its mappings."""
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r8181 notebook_id = super(FileNotebookManager, self).new_notebook_id(name)
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r4484 self.rev_mapping[name] = notebook_id
return notebook_id
def delete_notebook_id(self, notebook_id):
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r8180 """Delete a notebook's id in the mapping."""
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r4484 name = self.mapping[notebook_id]
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r8181 super(FileNotebookManager, self).delete_notebook_id(notebook_id)
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r4484 del self.rev_mapping[name]
def notebook_exists(self, notebook_id):
"""Does a notebook exist?"""
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r8181 exists = super(FileNotebookManager, self).notebook_exists(notebook_id)
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r8180 if not exists:
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r4484 return False
path = self.get_path_by_name(self.mapping[notebook_id])
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r4609 return os.path.isfile(path)
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def get_name(self, notebook_id):
"""get a notebook name, raising 404 if not found"""
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r4484 try:
name = self.mapping[notebook_id]
except KeyError:
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r4676 raise web.HTTPError(404, u'Notebook does not exist: %s' % notebook_id)
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r10497 return name
def get_path(self, notebook_id):
"""Return a full path to a notebook given its notebook_id."""
name = self.get_name(notebook_id)
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r4484 return self.get_path_by_name(name)
def get_path_by_name(self, name):
"""Return a full path to a notebook given its name."""
filename = name + self.filename_ext
path = os.path.join(self.notebook_dir, filename)
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r10497 return path
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r4484
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r10497 def read_notebook_object_from_path(self, path):
"""read a notebook object from a path"""
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r4484 info = os.stat(path)
last_modified = datetime.datetime.utcfromtimestamp(info.st_mtime)
Brian E. Granger
Making JSON the default .ipynb format.
r4633 with open(path,'r') as f:
s = f.read()
try:
# v1 and v2 and json in the .ipynb files.
nb = current.reads(s, u'json')
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r10497 except Exception as e:
raise web.HTTPError(500, u'Unreadable JSON notebook: %s' % e)
return last_modified, nb
def read_notebook_object(self, notebook_id):
"""Get the Notebook representation of a notebook by notebook_id."""
path = self.get_path(notebook_id)
if not os.path.isfile(path):
raise web.HTTPError(404, u'Notebook does not exist: %s' % notebook_id)
last_modified, nb = self.read_notebook_object_from_path(path)
Brian Granger
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r7231 # Always use the filename as the notebook name.
Kent Inverarity
change to minrk's suggestion from mailing list
r7615 nb.metadata.name = os.path.splitext(os.path.basename(path))[0]
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r4484 return last_modified, nb
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r10497
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r8180 def write_notebook_object(self, nb, notebook_id=None):
"""Save an existing notebook object by notebook_id."""
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r4484 try:
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r8180 new_name = nb.metadata.name
except AttributeError:
raise web.HTTPError(400, u'Missing notebook name')
Brian E. Granger
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r4491
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r8180 if notebook_id is None:
notebook_id = self.new_notebook_id(new_name)
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r4484
if notebook_id not in self.mapping:
Brian E. Granger
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r4676 raise web.HTTPError(404, u'Notebook does not exist: %s' % notebook_id)
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r8180
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r4484 old_name = self.mapping[notebook_id]
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r10497 old_checkpoints = self.list_checkpoints(notebook_id)
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r4484 path = self.get_path_by_name(new_name)
try:
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r10497 self.log.debug("Writing notebook %s", path)
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r4484 with open(path,'w') as f:
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r4633 current.write(nb, f, u'json')
MinRK
include error in 'Unexpected error' message.
r5709 except Exception as e:
raise web.HTTPError(400, u'Unexpected error while saving notebook: %s' % e)
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r8180
MinRK
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r5653 # save .py script as well
if self.save_script:
pypath = os.path.splitext(path)[0] + '.py'
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r10497 self.log.debug("Writing script %s", pypath)
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r5653 try:
Thomas Kluyver
Specify UTF-8 encoding for saving notebook as script.
r6031 with io.open(pypath,'w', encoding='utf-8') as f:
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r5653 current.write(nb, f, u'py')
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r5709 except Exception as e:
raise web.HTTPError(400, u'Unexpected error while saving notebook as script: %s' % e)
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r5653
Brian Granger
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r8180 # remove old files if the name changed
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r4484 if old_name != new_name:
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r10497 # update mapping
self.mapping[notebook_id] = new_name
self.rev_mapping[new_name] = notebook_id
del self.rev_mapping[old_name]
# remove renamed original, if it exists
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r4484 old_path = self.get_path_by_name(old_name)
if os.path.isfile(old_path):
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r10497 self.log.debug("unlinking %s", old_path)
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r4484 os.unlink(old_path)
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# cleanup old script, if it exists
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r5653 if self.save_script:
old_pypath = os.path.splitext(old_path)[0] + '.py'
if os.path.isfile(old_pypath):
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r10497 self.log.debug("unlinking %s", old_pypath)
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r5653 os.unlink(old_pypath)
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# rename checkpoints to follow file
self.log.debug("%s", old_checkpoints)
for cp in old_checkpoints:
old_cp_path = self.get_checkpoint_path_by_name(old_name, cp)
new_cp_path = self.get_checkpoint_path_by_name(new_name, cp)
if os.path.isfile(old_cp_path):
self.log.debug("renaming %s -> %s", old_cp_path, new_cp_path)
os.rename(old_cp_path, new_cp_path)
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r8180 return notebook_id
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r4484
def delete_notebook(self, notebook_id):
"""Delete notebook by notebook_id."""
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r10497 path = self.get_path(notebook_id)
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r4484 if not os.path.isfile(path):
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r4676 raise web.HTTPError(404, u'Notebook does not exist: %s' % notebook_id)
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r10497 self.log.debug("unlinking %s", path)
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r4484 os.unlink(path)
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r10497
# clear checkpoints
for checkpoint_id in self.list_checkpoints(notebook_id):
path = self.get_checkpoint_path(notebook_id, checkpoint_id)
if os.path.isfile(path):
self.log.debug("unlinking %s", path)
os.unlink(path)
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r4484 self.delete_notebook_id(notebook_id)
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Finishing work on "Make a Copy" functionality.
r5861 def increment_filename(self, basename):
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Fixing docstring in the notebook manager.
r5877 """Return a non-used filename of the form basename<int>.
This searches through the filenames (basename0, basename1, ...)
until is find one that is not already being used. It is used to
create Untitled and Copy names that are unique.
"""
Brian E. Granger
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r4484 i = 0
while True:
Brian Granger
Finishing work on "Make a Copy" functionality.
r5861 name = u'%s%i' % (basename,i)
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r4484 path = self.get_path_by_name(name)
if not os.path.isfile(path):
break
else:
i = i+1
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r8180 return name
MinRK
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r10497
# Checkpoint-related utilities
def get_checkpoint_path_by_name(self, name, checkpoint_id):
"""Return a full path to a notebook checkpoint, given its name and checkpoint id."""
filename = "{name}-{checkpoint_id}{ext}".format(
name=name,
checkpoint_id=checkpoint_id,
ext=self.filename_ext,
)
path = os.path.join(self.checkpoint_dir, filename)
return path
def get_checkpoint_path(self, notebook_id, checkpoint_id):
"""find the path to a checkpoint"""
name = self.get_name(notebook_id)
return self.get_checkpoint_path_by_name(name, checkpoint_id)
# public checkpoint API
def create_checkpoint(self, notebook_id):
"""Create a checkpoint from the current state of a notebook"""
nb_path = self.get_path(notebook_id)
cp_path = self.get_checkpoint_path(notebook_id, "checkpoint")
self.log.debug("creating checkpoint for notebook %s", notebook_id)
if not os.path.exists(self.checkpoint_dir):
os.mkdir(self.checkpoint_dir)
shutil.copy2(nb_path, cp_path)
def list_checkpoints(self, notebook_id):
"""list the checkpoints for a given notebook
Paul Ivanov
print info string on interrupt, log it on startup
r10019
MinRK
add checkpoint API to FileNBManager
r10497 This notebook manager currently only supports one checkpoint per notebook.
"""
path = self.get_checkpoint_path(notebook_id, "checkpoint")
if os.path.exists(path):
return ["checkpoint"]
else:
return []
def restore_checkpoint(self, notebook_id, checkpoint_id):
"""restore a notebook to a checkpointed state"""
self.log.info("restoring Notebook %s from checkpoint %s", notebook_id, checkpoint_id)
nb_path = self.get_path(notebook_id)
cp_path = self.get_checkpoint_path(notebook_id, checkpoint_id)
if not os.path.isfile(cp_path):
raise web.HTTPError(404,
u'Notebook checkpoint does not exist: %s-%s' % (notebook_id, checkpoint_id)
)
# ensure notebook is readable (never restore from an unreadable notebook)
last_modified, nb = self.read_notebook_object_from_path(cp_path)
shutil.copy2(cp_path, nb_path)
self.log.debug("copying %s -> %s", cp_path, nb_path)
def delete_checkpoint(self, notebook_id, checkpoint_id):
"""delete a notebook's checkpoint"""
path = self.get_checkpoint_path(notebook_id, checkpoint_id)
if not os.path.isfile(path):
raise web.HTTPError(404,
u'Notebook checkpoint does not exist: %s-%s' % (notebook_id, checkpoint_id)
)
self.log.debug("unlinking %s", path)
os.unlink(path)
Paul Ivanov
print info string on interrupt, log it on startup
r10019 def info_string(self):
return "Serving notebooks from local directory: %s" % self.notebook_dir