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Merge pull request #2194 from minrk/clean_nan...
Merge pull request #2194 from minrk/clean_nan Clean nan/inf in json_clean. The floating point values NaN and Infinity are not part of the JSON specification and causes some parsers to throw errors. Since our usage is only for things like the display of function defaults, we can use a basic string representation ('NaN', 'inf', etc) instead.

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magics.py
424 lines | 12.9 KiB | text/x-python | PythonLexer
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r7473 # encoding: utf-8
"""
=============
parallelmagic
=============
Magic command interface for interactive parallel work.
Usage
=====
``%autopx``
{AUTOPX_DOC}
``%px``
{PX_DOC}
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r7476 ``%pxresult``
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{RESULT_DOC}
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r7476 ``%pxconfig``
{CONFIG_DOC}
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r7473 """
#-----------------------------------------------------------------------------
# Copyright (C) 2008 The IPython Development Team
#
# Distributed under the terms of the BSD License. The full license is in
# the file COPYING, distributed as part of this software.
#-----------------------------------------------------------------------------
#-----------------------------------------------------------------------------
# Imports
#-----------------------------------------------------------------------------
import ast
import re
from IPython.core.error import UsageError
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r7476 from IPython.core.magic import Magics
from IPython.core import magic_arguments
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r7473 from IPython.testing.skipdoctest import skip_doctest
#-----------------------------------------------------------------------------
# Definitions of magic functions for use with IPython
#-----------------------------------------------------------------------------
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r7476 NO_LAST_RESULT = "%pxresult recalls last %px result, which has not yet been used."
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r7476 def exec_args(f):
"""decorator for adding block/targets args for execution
applied to %pxconfig and %%px
"""
args = [
magic_arguments.argument('-b', '--block', action="store_const",
const=True, dest='block',
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r7501 help="use blocking (sync) execution",
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r7476 ),
magic_arguments.argument('-a', '--noblock', action="store_const",
const=False, dest='block',
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r7501 help="use non-blocking (async) execution",
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r7476 ),
magic_arguments.argument('-t', '--targets', type=str,
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r7501 help="specify the targets on which to execute",
),
magic_arguments.argument('--verbose', action="store_const",
const=True, dest="set_verbose",
help="print a message at each execution",
),
magic_arguments.argument('--no-verbose', action="store_const",
const=False, dest="set_verbose",
help="don't print any messages",
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r7476 ),
]
for a in args:
f = a(f)
return f
def output_args(f):
"""decorator for output-formatting args
applied to %pxresult and %%px
"""
args = [
magic_arguments.argument('-r', action="store_const", dest='groupby',
const='order',
help="collate outputs in order (same as group-outputs=order)"
),
magic_arguments.argument('-e', action="store_const", dest='groupby',
const='engine',
help="group outputs by engine (same as group-outputs=engine)"
),
magic_arguments.argument('--group-outputs', dest='groupby', type=str,
choices=['engine', 'order', 'type'], default='type',
help="""Group the outputs in a particular way.
Choices are:
type: group outputs of all engines by type (stdout, stderr, displaypub, etc.).
engine: display all output for each engine together.
order: like type, but individual displaypub output from each engine is collated.
For example, if multiple plots are generated by each engine, the first
figure of each engine will be displayed, then the second of each, etc.
"""
),
magic_arguments.argument('-o', '--out', dest='save_name', type=str,
help="""store the AsyncResult object for this computation
in the global namespace under this name.
"""
),
]
for a in args:
f = a(f)
return f
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class ParallelMagics(Magics):
"""A set of magics useful when controlling a parallel IPython cluster.
"""
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r7476 # magic-related
magics = None
registered = True
# suffix for magics
suffix = ''
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r7473 # A flag showing if autopx is activated or not
_autopx = False
# the current view used by the magics:
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r7476 view = None
# last result cache for %pxresult
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r7473 last_result = None
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r7501 # verbose flag
verbose = False
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r7476 def __init__(self, shell, view, suffix=''):
self.view = view
self.suffix = suffix
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r7473
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r7476 # register magics
self.magics = dict(cell={},line={})
line_magics = self.magics['line']
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r7476 px = 'px' + suffix
if not suffix:
# keep %result for legacy compatibility
line_magics['result'] = self.result
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r7476 line_magics['pxresult' + suffix] = self.result
line_magics[px] = self.px
line_magics['pxconfig' + suffix] = self.pxconfig
line_magics['auto' + px] = self.autopx
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r7476 self.magics['cell'][px] = self.cell_px
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r7476 super(ParallelMagics, self).__init__(shell=shell)
def _eval_target_str(self, ts):
if ':' in ts:
targets = eval("self.view.client.ids[%s]" % ts)
elif 'all' in ts:
targets = 'all'
else:
targets = eval(ts)
return targets
@magic_arguments.magic_arguments()
@exec_args
def pxconfig(self, line):
"""configure default targets/blocking for %px magics"""
args = magic_arguments.parse_argstring(self.pxconfig, line)
if args.targets:
self.view.targets = self._eval_target_str(args.targets)
if args.block is not None:
self.view.block = args.block
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r7501 if args.set_verbose is not None:
self.verbose = args.set_verbose
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@magic_arguments.magic_arguments()
@output_args
@skip_doctest
def result(self, line=''):
"""Print the result of the last asynchronous %px command.
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This lets you recall the results of %px computations after
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r7476 asynchronous submission (block=False).
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r7476 Examples
--------
::
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In [23]: %px os.getpid()
Async parallel execution on engine(s): all
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r7476 In [24]: %pxresult
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r7495 Out[8:10]: 60920
Out[9:10]: 60921
Out[10:10]: 60922
Out[11:10]: 60923
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r7473 """
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r7476 args = magic_arguments.parse_argstring(self.result, line)
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if self.last_result is None:
raise UsageError(NO_LAST_RESULT)
self.last_result.get()
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r7476 self.last_result.display_outputs(groupby=args.groupby)
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@skip_doctest
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r7476 def px(self, line=''):
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r7473 """Executes the given python command in parallel.
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r7476 Examples
--------
::
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In [24]: %px a = os.getpid()
Parallel execution on engine(s): all
In [25]: %px print a
[stdout:0] 1234
[stdout:1] 1235
[stdout:2] 1236
[stdout:3] 1237
"""
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r7476 return self.parallel_execute(line)
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def parallel_execute(self, cell, block=None, groupby='type', save_name=None):
"""implementation used by %px and %%parallel"""
# defaults:
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r7476 block = self.view.block if block is None else block
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base = "Parallel" if block else "Async parallel"
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r7476 targets = self.view.targets
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r7473 if isinstance(targets, list) and len(targets) > 10:
str_targets = str(targets[:4])[:-1] + ', ..., ' + str(targets[-4:])[1:]
else:
str_targets = str(targets)
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r7501 if self.verbose:
print base + " execution on engine(s): %s" % str_targets
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r7476 result = self.view.execute(cell, silent=False, block=False)
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r7473 self.last_result = result
if save_name:
self.shell.user_ns[save_name] = result
if block:
result.get()
result.display_outputs(groupby)
else:
# return AsyncResult only on non-blocking submission
return result
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r7476 @magic_arguments.magic_arguments()
@exec_args
@output_args
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r7473 @skip_doctest
def cell_px(self, line='', cell=None):
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r7476 """Executes the cell in parallel.
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r7476 Examples
--------
::
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In [24]: %%px --noblock
....: a = os.getpid()
Async parallel execution on engine(s): all
In [25]: %%px
....: print a
[stdout:0] 1234
[stdout:1] 1235
[stdout:2] 1236
[stdout:3] 1237
"""
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r7476 args = magic_arguments.parse_argstring(self.cell_px, line)
if args.targets:
save_targets = self.view.targets
self.view.targets = self._eval_target_str(args.targets)
try:
return self.parallel_execute(cell, block=args.block,
groupby=args.groupby,
save_name=args.save_name,
)
finally:
if args.targets:
self.view.targets = save_targets
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r7473 @skip_doctest
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r7476 def autopx(self, line=''):
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r7473 """Toggles auto parallel mode.
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r7476 Once this is called, all commands typed at the command line are send to
the engines to be executed in parallel. To control which engine are
used, the ``targets`` attribute of the view before
entering ``%autopx`` mode.
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Then you can do the following::
In [25]: %autopx
%autopx to enabled
In [26]: a = 10
Parallel execution on engine(s): [0,1,2,3]
In [27]: print a
Parallel execution on engine(s): [0,1,2,3]
[stdout:0] 10
[stdout:1] 10
[stdout:2] 10
[stdout:3] 10
In [27]: %autopx
%autopx disabled
"""
if self._autopx:
self._disable_autopx()
else:
self._enable_autopx()
def _enable_autopx(self):
"""Enable %autopx mode by saving the original run_cell and installing
pxrun_cell.
"""
# override run_cell
self._original_run_cell = self.shell.run_cell
self.shell.run_cell = self.pxrun_cell
self._autopx = True
print "%autopx enabled"
def _disable_autopx(self):
"""Disable %autopx by restoring the original InteractiveShell.run_cell.
"""
if self._autopx:
self.shell.run_cell = self._original_run_cell
self._autopx = False
print "%autopx disabled"
def pxrun_cell(self, raw_cell, store_history=False, silent=False):
"""drop-in replacement for InteractiveShell.run_cell.
This executes code remotely, instead of in the local namespace.
See InteractiveShell.run_cell for details.
"""
if (not raw_cell) or raw_cell.isspace():
return
ipself = self.shell
with ipself.builtin_trap:
cell = ipself.prefilter_manager.prefilter_lines(raw_cell)
# Store raw and processed history
if store_history:
ipself.history_manager.store_inputs(ipself.execution_count,
cell, raw_cell)
# ipself.logger.log(cell, raw_cell)
cell_name = ipself.compile.cache(cell, ipself.execution_count)
try:
ast.parse(cell, filename=cell_name)
except (OverflowError, SyntaxError, ValueError, TypeError,
MemoryError):
# Case 1
ipself.showsyntaxerror()
ipself.execution_count += 1
return None
except NameError:
# ignore name errors, because we don't know the remote keys
pass
if store_history:
# Write output to the database. Does nothing unless
# history output logging is enabled.
ipself.history_manager.store_output(ipself.execution_count)
# Each cell is a *single* input, regardless of how many lines it has
ipself.execution_count += 1
if re.search(r'get_ipython\(\)\.magic\(u?["\']%?autopx', cell):
self._disable_autopx()
return False
else:
try:
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r7476 result = self.view.execute(cell, silent=False, block=False)
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r7473 except:
ipself.showtraceback()
return True
else:
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r7476 if self.view.block:
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r7473 try:
result.get()
except:
self.shell.showtraceback()
return True
else:
with ipself.builtin_trap:
result.display_outputs()
return False
__doc__ = __doc__.format(
AUTOPX_DOC = ' '*8 + ParallelMagics.autopx.__doc__,
PX_DOC = ' '*8 + ParallelMagics.px.__doc__,
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r7476 RESULT_DOC = ' '*8 + ParallelMagics.result.__doc__,
CONFIG_DOC = ' '*8 + ParallelMagics.pxconfig.__doc__,
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r7473 )