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Merge pull request #3301 from juliantaylor/no-python-test...
Merge pull request #3301 from juliantaylor/no-python-test allow python3 tests without python installed

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r10518:d4fedf6f
r10608:262abcd3 merge
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filenbmanager.py
346 lines | 13.5 KiB | text/x-python | PythonLexer
Brian E. Granger
More review changes....
r4609 """A notebook manager that uses the local file system for storage.
Authors:
* Brian Granger
"""
Brian E. Granger
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r4484 #-----------------------------------------------------------------------------
Brian Granger
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r8180 # Copyright (C) 2011 The IPython Development Team
Brian E. Granger
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r4484 #
# Distributed under the terms of the BSD License. The full license is in
Brian E. Granger
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r4609 # the file COPYING, distributed as part of this software.
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r4484 #-----------------------------------------------------------------------------
#-----------------------------------------------------------------------------
# Imports
#-----------------------------------------------------------------------------
import datetime
Thomas Kluyver
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r6030 import io
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r4484 import os
Stefan van der Walt
Move glob to global level import.
r4624 import glob
MinRK
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r10497 import shutil
Brian E. Granger
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r4484
from tornado import web
Brian Granger
Renaming BaseNotebookManager->NotebookManager to preserve config.
r8194 from .nbmanager import NotebookManager
Brian E. Granger
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r4484 from IPython.nbformat import current
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r8180 from IPython.utils.traitlets import Unicode, Dict, Bool, TraitError
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r4484
#-----------------------------------------------------------------------------
Fernando Perez
Add --script flag as shorthand for the script autosave notebook option.
r5758 # Classes
#-----------------------------------------------------------------------------
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r4484
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r8194 class FileNotebookManager(NotebookManager):
MinRK
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r5653
save_script = Bool(False, config=True,
Fernando Perez
Fix typo in help string
r5760 help="""Automatically create a Python script when saving the notebook.
MinRK
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r5653
Matthias BUSSONNIER
remove references to loadpy...
r6765 For easier use of import, %run and %load across notebooks, a
Fernando Perez
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r5758 <notebook-name>.py script will be created next to any
<notebook-name>.ipynb on each save. This can also be set with the
short `--script` flag.
MinRK
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r5653 """
)
MinRK
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r10497 checkpoint_dir = Unicode(config=True,
help="""The location in which to keep notebook checkpoints
By default, it is notebook-dir/.ipynb_checkpoints
"""
)
def _checkpoint_dir_default(self):
return os.path.join(self.notebook_dir, '.ipynb_checkpoints')
def _checkpoint_dir_changed(self, name, old, new):
"""do a bit of validation of the checkpoint dir"""
if not os.path.isabs(new):
# If we receive a non-absolute path, make it absolute.
abs_new = os.path.abspath(new)
self.checkpoint_dir = abs_new
return
if os.path.exists(new) and not os.path.isdir(new):
raise TraitError("checkpoint dir %r is not a directory" % new)
if not os.path.exists(new):
self.log.info("Creating checkpoint dir %s", new)
try:
os.mkdir(new)
except:
raise TraitError("Couldn't create checkpoint dir %r" % new)
Brian E. Granger
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r4484 filename_ext = Unicode(u'.ipynb')
# Map notebook names to notebook_ids
rev_mapping = Dict()
MinRK
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r10497
Brian Granger
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r8180 def get_notebook_names(self):
"""List all notebook names in the notebook dir."""
Stefan van der Walt
Allow period characters in notebook names.
r4623 names = glob.glob(os.path.join(self.notebook_dir,
'*' + self.filename_ext))
names = [os.path.splitext(os.path.basename(name))[0]
for name in names]
Brian Granger
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r8180 return names
def list_notebooks(self):
"""List all notebooks in the notebook dir."""
names = self.get_notebook_names()
Stefan van der Walt
Allow period characters in notebook names.
r4623
Brian E. Granger
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r4484 data = []
for name in names:
if name not in self.rev_mapping:
notebook_id = self.new_notebook_id(name)
else:
notebook_id = self.rev_mapping[name]
data.append(dict(notebook_id=notebook_id,name=name))
Brian E. Granger
Implemented basic notebook browser and fixed numerous bugs.
r4488 data = sorted(data, key=lambda item: item['name'])
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r4484 return data
def new_notebook_id(self, name):
"""Generate a new notebook_id for a name and store its mappings."""
Brian Granger
Fixing minor things for the Azure backed nb storage.
r8181 notebook_id = super(FileNotebookManager, self).new_notebook_id(name)
Brian E. Granger
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r4484 self.rev_mapping[name] = notebook_id
return notebook_id
def delete_notebook_id(self, notebook_id):
Brian Granger
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r8180 """Delete a notebook's id in the mapping."""
Brian E. Granger
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r4484 name = self.mapping[notebook_id]
Brian Granger
Fixing minor things for the Azure backed nb storage.
r8181 super(FileNotebookManager, self).delete_notebook_id(notebook_id)
Brian E. Granger
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r4484 del self.rev_mapping[name]
def notebook_exists(self, notebook_id):
"""Does a notebook exist?"""
Brian Granger
Fixing minor things for the Azure backed nb storage.
r8181 exists = super(FileNotebookManager, self).notebook_exists(notebook_id)
Brian Granger
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r8180 if not exists:
Brian E. Granger
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r4484 return False
path = self.get_path_by_name(self.mapping[notebook_id])
Brian E. Granger
More review changes....
r4609 return os.path.isfile(path)
MinRK
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r10497
def get_name(self, notebook_id):
"""get a notebook name, raising 404 if not found"""
Brian E. Granger
Massive work on the notebook document format....
r4484 try:
name = self.mapping[notebook_id]
except KeyError:
Brian E. Granger
Adding messages to HTTPError raising....
r4676 raise web.HTTPError(404, u'Notebook does not exist: %s' % notebook_id)
MinRK
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r10497 return name
def get_path(self, notebook_id):
"""Return a full path to a notebook given its notebook_id."""
name = self.get_name(notebook_id)
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r4484 return self.get_path_by_name(name)
def get_path_by_name(self, name):
"""Return a full path to a notebook given its name."""
filename = name + self.filename_ext
path = os.path.join(self.notebook_dir, filename)
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r10497 return path
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r4484
MinRK
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r10497 def read_notebook_object_from_path(self, path):
"""read a notebook object from a path"""
Brian E. Granger
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r4484 info = os.stat(path)
last_modified = datetime.datetime.utcfromtimestamp(info.st_mtime)
Brian E. Granger
Making JSON the default .ipynb format.
r4633 with open(path,'r') as f:
s = f.read()
try:
# v1 and v2 and json in the .ipynb files.
nb = current.reads(s, u'json')
MinRK
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r10497 except Exception as e:
raise web.HTTPError(500, u'Unreadable JSON notebook: %s' % e)
return last_modified, nb
def read_notebook_object(self, notebook_id):
"""Get the Notebook representation of a notebook by notebook_id."""
path = self.get_path(notebook_id)
if not os.path.isfile(path):
raise web.HTTPError(404, u'Notebook does not exist: %s' % notebook_id)
last_modified, nb = self.read_notebook_object_from_path(path)
Brian Granger
Always use filename as the notebook name.
r7231 # Always use the filename as the notebook name.
Kent Inverarity
change to minrk's suggestion from mailing list
r7615 nb.metadata.name = os.path.splitext(os.path.basename(path))[0]
Brian E. Granger
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r4484 return last_modified, nb
MinRK
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r10497
Brian Granger
Refactoring notebook managers and adding Azure backed storage....
r8180 def write_notebook_object(self, nb, notebook_id=None):
"""Save an existing notebook object by notebook_id."""
Brian E. Granger
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r4484 try:
Brian Granger
Refactoring notebook managers and adding Azure backed storage....
r8180 new_name = nb.metadata.name
except AttributeError:
raise web.HTTPError(400, u'Missing notebook name')
Brian E. Granger
File upload/import working from notebook browser.
r4491
Brian Granger
Refactoring notebook managers and adding Azure backed storage....
r8180 if notebook_id is None:
notebook_id = self.new_notebook_id(new_name)
Brian E. Granger
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r4484
if notebook_id not in self.mapping:
Brian E. Granger
Adding messages to HTTPError raising....
r4676 raise web.HTTPError(404, u'Notebook does not exist: %s' % notebook_id)
Brian Granger
Refactoring notebook managers and adding Azure backed storage....
r8180
Brian E. Granger
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r4484 old_name = self.mapping[notebook_id]
MinRK
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r10497 old_checkpoints = self.list_checkpoints(notebook_id)
Brian E. Granger
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r4484 path = self.get_path_by_name(new_name)
try:
MinRK
deleting a notebook deletes its checkpoints...
r10518 self.log.debug("Autosaving notebook %s", path)
Brian E. Granger
Massive work on the notebook document format....
r4484 with open(path,'w') as f:
Brian E. Granger
Making JSON the default .ipynb format.
r4633 current.write(nb, f, u'json')
MinRK
include error in 'Unexpected error' message.
r5709 except Exception as e:
MinRK
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r10518 raise web.HTTPError(400, u'Unexpected error while autosaving notebook: %s' % e)
Brian Granger
Refactoring notebook managers and adding Azure backed storage....
r8180
MinRK
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r5653 # save .py script as well
if self.save_script:
pypath = os.path.splitext(path)[0] + '.py'
MinRK
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r10497 self.log.debug("Writing script %s", pypath)
MinRK
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r5653 try:
Thomas Kluyver
Specify UTF-8 encoding for saving notebook as script.
r6031 with io.open(pypath,'w', encoding='utf-8') as f:
MinRK
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r5653 current.write(nb, f, u'py')
MinRK
include error in 'Unexpected error' message.
r5709 except Exception as e:
raise web.HTTPError(400, u'Unexpected error while saving notebook as script: %s' % e)
MinRK
allow saving notebook.py next to notebook.ipynb...
r5653
Brian Granger
Refactoring notebook managers and adding Azure backed storage....
r8180 # remove old files if the name changed
Brian E. Granger
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r4484 if old_name != new_name:
MinRK
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r10497 # update mapping
self.mapping[notebook_id] = new_name
self.rev_mapping[new_name] = notebook_id
del self.rev_mapping[old_name]
# remove renamed original, if it exists
Brian E. Granger
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r4484 old_path = self.get_path_by_name(old_name)
if os.path.isfile(old_path):
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r10518 self.log.debug("unlinking notebook %s", old_path)
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r4484 os.unlink(old_path)
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r10497
# cleanup old script, if it exists
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r5653 if self.save_script:
old_pypath = os.path.splitext(old_path)[0] + '.py'
if os.path.isfile(old_pypath):
MinRK
deleting a notebook deletes its checkpoints...
r10518 self.log.debug("unlinking script %s", old_pypath)
MinRK
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r5653 os.unlink(old_pypath)
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r10497
# rename checkpoints to follow file
for cp in old_checkpoints:
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deleting a notebook deletes its checkpoints...
r10518 checkpoint_id = cp['checkpoint_id']
old_cp_path = self.get_checkpoint_path_by_name(old_name, checkpoint_id)
new_cp_path = self.get_checkpoint_path_by_name(new_name, checkpoint_id)
MinRK
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r10497 if os.path.isfile(old_cp_path):
MinRK
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r10518 self.log.debug("renaming checkpoint %s -> %s", old_cp_path, new_cp_path)
MinRK
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r10497 os.rename(old_cp_path, new_cp_path)
Brian Granger
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r8180 return notebook_id
Brian E. Granger
Massive work on the notebook document format....
r4484
def delete_notebook(self, notebook_id):
"""Delete notebook by notebook_id."""
MinRK
deleting a notebook deletes its checkpoints...
r10518 nb_path = self.get_path(notebook_id)
if not os.path.isfile(nb_path):
Brian E. Granger
Adding messages to HTTPError raising....
r4676 raise web.HTTPError(404, u'Notebook does not exist: %s' % notebook_id)
MinRK
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r10497
# clear checkpoints
MinRK
deleting a notebook deletes its checkpoints...
r10518 for checkpoint in self.list_checkpoints(notebook_id):
checkpoint_id = checkpoint['checkpoint_id']
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r10497 path = self.get_checkpoint_path(notebook_id, checkpoint_id)
MinRK
deleting a notebook deletes its checkpoints...
r10518 self.log.debug(path)
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r10497 if os.path.isfile(path):
MinRK
deleting a notebook deletes its checkpoints...
r10518 self.log.debug("unlinking checkpoint %s", path)
MinRK
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r10497 os.unlink(path)
MinRK
deleting a notebook deletes its checkpoints...
r10518
self.log.debug("unlinking notebook %s", nb_path)
os.unlink(nb_path)
Brian E. Granger
Massive work on the notebook document format....
r4484 self.delete_notebook_id(notebook_id)
Brian Granger
Finishing work on "Make a Copy" functionality.
r5861 def increment_filename(self, basename):
Brian Granger
Fixing docstring in the notebook manager.
r5877 """Return a non-used filename of the form basename<int>.
This searches through the filenames (basename0, basename1, ...)
until is find one that is not already being used. It is used to
create Untitled and Copy names that are unique.
"""
Brian E. Granger
Massive work on the notebook document format....
r4484 i = 0
while True:
Brian Granger
Finishing work on "Make a Copy" functionality.
r5861 name = u'%s%i' % (basename,i)
Brian E. Granger
Massive work on the notebook document format....
r4484 path = self.get_path_by_name(name)
if not os.path.isfile(path):
break
else:
i = i+1
Brian Granger
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r8180 return name
MinRK
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r10497
# Checkpoint-related utilities
def get_checkpoint_path_by_name(self, name, checkpoint_id):
"""Return a full path to a notebook checkpoint, given its name and checkpoint id."""
filename = "{name}-{checkpoint_id}{ext}".format(
name=name,
checkpoint_id=checkpoint_id,
ext=self.filename_ext,
)
path = os.path.join(self.checkpoint_dir, filename)
return path
def get_checkpoint_path(self, notebook_id, checkpoint_id):
"""find the path to a checkpoint"""
name = self.get_name(notebook_id)
return self.get_checkpoint_path_by_name(name, checkpoint_id)
MinRK
checkpoint info is a dict...
r10500 def get_checkpoint_info(self, notebook_id, checkpoint_id):
"""construct the info dict for a given checkpoint"""
path = self.get_checkpoint_path(notebook_id, checkpoint_id)
stats = os.stat(path)
last_modified = datetime.datetime.utcfromtimestamp(stats.st_mtime)
info = dict(
checkpoint_id = checkpoint_id,
last_modified = last_modified,
)
return info
MinRK
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r10497 # public checkpoint API
def create_checkpoint(self, notebook_id):
"""Create a checkpoint from the current state of a notebook"""
nb_path = self.get_path(notebook_id)
MinRK
checkpoint info is a dict...
r10500 # only the one checkpoint ID:
checkpoint_id = "checkpoint"
cp_path = self.get_checkpoint_path(notebook_id, checkpoint_id)
MinRK
add checkpoint API to FileNBManager
r10497 self.log.debug("creating checkpoint for notebook %s", notebook_id)
if not os.path.exists(self.checkpoint_dir):
os.mkdir(self.checkpoint_dir)
shutil.copy2(nb_path, cp_path)
MinRK
checkpoint info is a dict...
r10500
# return the checkpoint info
return self.get_checkpoint_info(notebook_id, checkpoint_id)
MinRK
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r10497
def list_checkpoints(self, notebook_id):
"""list the checkpoints for a given notebook
Paul Ivanov
print info string on interrupt, log it on startup
r10019
MinRK
add checkpoint API to FileNBManager
r10497 This notebook manager currently only supports one checkpoint per notebook.
"""
MinRK
checkpoint info is a dict...
r10500 checkpoint_id = "checkpoint"
path = self.get_checkpoint_path(notebook_id, checkpoint_id)
if not os.path.exists(path):
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r10497 return []
MinRK
checkpoint info is a dict...
r10500 else:
return [self.get_checkpoint_info(notebook_id, checkpoint_id)]
MinRK
add checkpoint API to FileNBManager
r10497
def restore_checkpoint(self, notebook_id, checkpoint_id):
"""restore a notebook to a checkpointed state"""
self.log.info("restoring Notebook %s from checkpoint %s", notebook_id, checkpoint_id)
nb_path = self.get_path(notebook_id)
cp_path = self.get_checkpoint_path(notebook_id, checkpoint_id)
if not os.path.isfile(cp_path):
MinRK
checkpoint info is a dict...
r10500 self.log.debug("checkpoint file does not exist: %s", cp_path)
MinRK
add checkpoint API to FileNBManager
r10497 raise web.HTTPError(404,
u'Notebook checkpoint does not exist: %s-%s' % (notebook_id, checkpoint_id)
)
# ensure notebook is readable (never restore from an unreadable notebook)
last_modified, nb = self.read_notebook_object_from_path(cp_path)
shutil.copy2(cp_path, nb_path)
self.log.debug("copying %s -> %s", cp_path, nb_path)
def delete_checkpoint(self, notebook_id, checkpoint_id):
"""delete a notebook's checkpoint"""
path = self.get_checkpoint_path(notebook_id, checkpoint_id)
if not os.path.isfile(path):
raise web.HTTPError(404,
u'Notebook checkpoint does not exist: %s-%s' % (notebook_id, checkpoint_id)
)
self.log.debug("unlinking %s", path)
os.unlink(path)
Paul Ivanov
print info string on interrupt, log it on startup
r10019 def info_string(self):
return "Serving notebooks from local directory: %s" % self.notebook_dir