##// END OF EJS Templates
Merge pull request #3734 from jdfreder/file_subdir...
Merge pull request #3734 from jdfreder/file_subdir Nbconvert: Export extracted files into `nbname_files` subdirectory Default build directory changed to . Files extracted from notebook now are placed into a ./notebook_files/ directory by default Spaces added between # symbols and comments It may be best to look at the diffs of the individual commits... The addition of spaces in the comments makes the overall diff hard to read.

File last commit:

r8999:c681238b
r11642:321025c8 merge
Show More
magics.py
441 lines | 13.5 KiB | text/x-python | PythonLexer
MinRK
parallel magics are no longer an extension
r7473 # encoding: utf-8
"""
=============
parallelmagic
=============
Magic command interface for interactive parallel work.
Usage
=====
``%autopx``
{AUTOPX_DOC}
``%px``
{PX_DOC}
MinRK
update parallel magics...
r7476 ``%pxresult``
MinRK
parallel magics are no longer an extension
r7473
{RESULT_DOC}
MinRK
update parallel magics...
r7476 ``%pxconfig``
{CONFIG_DOC}
MinRK
parallel magics are no longer an extension
r7473 """
#-----------------------------------------------------------------------------
# Copyright (C) 2008 The IPython Development Team
#
# Distributed under the terms of the BSD License. The full license is in
# the file COPYING, distributed as part of this software.
#-----------------------------------------------------------------------------
#-----------------------------------------------------------------------------
# Imports
#-----------------------------------------------------------------------------
import ast
import re
from IPython.core.error import UsageError
MinRK
update parallel magics...
r7476 from IPython.core.magic import Magics
from IPython.core import magic_arguments
MinRK
parallel magics are no longer an extension
r7473 from IPython.testing.skipdoctest import skip_doctest
#-----------------------------------------------------------------------------
# Definitions of magic functions for use with IPython
#-----------------------------------------------------------------------------
MinRK
update parallel magics...
r7476 NO_LAST_RESULT = "%pxresult recalls last %px result, which has not yet been used."
MinRK
parallel magics are no longer an extension
r7473
MinRK
update parallel magics...
r7476 def exec_args(f):
"""decorator for adding block/targets args for execution
applied to %pxconfig and %%px
"""
args = [
magic_arguments.argument('-b', '--block', action="store_const",
const=True, dest='block',
MinRK
add %pxconfig --[no-]verbose
r7501 help="use blocking (sync) execution",
MinRK
update parallel magics...
r7476 ),
magic_arguments.argument('-a', '--noblock', action="store_const",
const=False, dest='block',
MinRK
add %pxconfig --[no-]verbose
r7501 help="use non-blocking (async) execution",
MinRK
update parallel magics...
r7476 ),
magic_arguments.argument('-t', '--targets', type=str,
MinRK
add %pxconfig --[no-]verbose
r7501 help="specify the targets on which to execute",
),
MinRK
add `%%px --local` for local execution...
r8996 magic_arguments.argument('--local', action="store_const",
const=True, dest="local",
help="also execute the cell in the local namespace",
),
MinRK
add %pxconfig --[no-]verbose
r7501 magic_arguments.argument('--verbose', action="store_const",
const=True, dest="set_verbose",
help="print a message at each execution",
),
magic_arguments.argument('--no-verbose', action="store_const",
const=False, dest="set_verbose",
help="don't print any messages",
MinRK
update parallel magics...
r7476 ),
]
for a in args:
f = a(f)
return f
def output_args(f):
"""decorator for output-formatting args
applied to %pxresult and %%px
"""
args = [
magic_arguments.argument('-r', action="store_const", dest='groupby',
const='order',
help="collate outputs in order (same as group-outputs=order)"
),
magic_arguments.argument('-e', action="store_const", dest='groupby',
const='engine',
help="group outputs by engine (same as group-outputs=engine)"
),
magic_arguments.argument('--group-outputs', dest='groupby', type=str,
choices=['engine', 'order', 'type'], default='type',
help="""Group the outputs in a particular way.
Choices are:
type: group outputs of all engines by type (stdout, stderr, displaypub, etc.).
engine: display all output for each engine together.
order: like type, but individual displaypub output from each engine is collated.
For example, if multiple plots are generated by each engine, the first
figure of each engine will be displayed, then the second of each, etc.
"""
),
magic_arguments.argument('-o', '--out', dest='save_name', type=str,
help="""store the AsyncResult object for this computation
in the global namespace under this name.
"""
),
]
for a in args:
f = a(f)
return f
MinRK
parallel magics are no longer an extension
r7473
class ParallelMagics(Magics):
"""A set of magics useful when controlling a parallel IPython cluster.
"""
MinRK
update parallel magics...
r7476 # magic-related
magics = None
registered = True
# suffix for magics
suffix = ''
MinRK
parallel magics are no longer an extension
r7473 # A flag showing if autopx is activated or not
_autopx = False
# the current view used by the magics:
MinRK
update parallel magics...
r7476 view = None
# last result cache for %pxresult
MinRK
parallel magics are no longer an extension
r7473 last_result = None
MinRK
add %pxconfig --[no-]verbose
r7501 # verbose flag
verbose = False
MinRK
parallel magics are no longer an extension
r7473
MinRK
update parallel magics...
r7476 def __init__(self, shell, view, suffix=''):
self.view = view
self.suffix = suffix
MinRK
parallel magics are no longer an extension
r7473
MinRK
update parallel magics...
r7476 # register magics
self.magics = dict(cell={},line={})
line_magics = self.magics['line']
MinRK
parallel magics are no longer an extension
r7473
MinRK
update parallel magics...
r7476 px = 'px' + suffix
if not suffix:
# keep %result for legacy compatibility
line_magics['result'] = self.result
MinRK
parallel magics are no longer an extension
r7473
MinRK
update parallel magics...
r7476 line_magics['pxresult' + suffix] = self.result
line_magics[px] = self.px
line_magics['pxconfig' + suffix] = self.pxconfig
line_magics['auto' + px] = self.autopx
MinRK
parallel magics are no longer an extension
r7473
MinRK
update parallel magics...
r7476 self.magics['cell'][px] = self.cell_px
MinRK
parallel magics are no longer an extension
r7473
MinRK
update parallel magics...
r7476 super(ParallelMagics, self).__init__(shell=shell)
def _eval_target_str(self, ts):
if ':' in ts:
targets = eval("self.view.client.ids[%s]" % ts)
elif 'all' in ts:
targets = 'all'
else:
targets = eval(ts)
return targets
@magic_arguments.magic_arguments()
@exec_args
def pxconfig(self, line):
"""configure default targets/blocking for %px magics"""
args = magic_arguments.parse_argstring(self.pxconfig, line)
if args.targets:
self.view.targets = self._eval_target_str(args.targets)
if args.block is not None:
self.view.block = args.block
MinRK
add %pxconfig --[no-]verbose
r7501 if args.set_verbose is not None:
self.verbose = args.set_verbose
MinRK
update parallel magics...
r7476
@magic_arguments.magic_arguments()
@output_args
@skip_doctest
def result(self, line=''):
"""Print the result of the last asynchronous %px command.
MinRK
parallel magics are no longer an extension
r7473
This lets you recall the results of %px computations after
MinRK
update parallel magics...
r7476 asynchronous submission (block=False).
MinRK
parallel magics are no longer an extension
r7473
MinRK
update parallel magics...
r7476 Examples
--------
::
MinRK
parallel magics are no longer an extension
r7473
In [23]: %px os.getpid()
Async parallel execution on engine(s): all
MinRK
update parallel magics...
r7476 In [24]: %pxresult
MinRK
update parallel magics docstring
r7495 Out[8:10]: 60920
Out[9:10]: 60921
Out[10:10]: 60922
Out[11:10]: 60923
MinRK
parallel magics are no longer an extension
r7473 """
MinRK
update parallel magics...
r7476 args = magic_arguments.parse_argstring(self.result, line)
MinRK
parallel magics are no longer an extension
r7473
if self.last_result is None:
raise UsageError(NO_LAST_RESULT)
self.last_result.get()
MinRK
update parallel magics...
r7476 self.last_result.display_outputs(groupby=args.groupby)
MinRK
parallel magics are no longer an extension
r7473
@skip_doctest
MinRK
update parallel magics...
r7476 def px(self, line=''):
MinRK
parallel magics are no longer an extension
r7473 """Executes the given python command in parallel.
MinRK
update parallel magics...
r7476 Examples
--------
::
MinRK
parallel magics are no longer an extension
r7473
In [24]: %px a = os.getpid()
Parallel execution on engine(s): all
In [25]: %px print a
[stdout:0] 1234
[stdout:1] 1235
[stdout:2] 1236
[stdout:3] 1237
"""
MinRK
update parallel magics...
r7476 return self.parallel_execute(line)
MinRK
parallel magics are no longer an extension
r7473
def parallel_execute(self, cell, block=None, groupby='type', save_name=None):
"""implementation used by %px and %%parallel"""
# defaults:
MinRK
update parallel magics...
r7476 block = self.view.block if block is None else block
MinRK
parallel magics are no longer an extension
r7473
base = "Parallel" if block else "Async parallel"
MinRK
update parallel magics...
r7476 targets = self.view.targets
MinRK
parallel magics are no longer an extension
r7473 if isinstance(targets, list) and len(targets) > 10:
str_targets = str(targets[:4])[:-1] + ', ..., ' + str(targets[-4:])[1:]
else:
str_targets = str(targets)
MinRK
add %pxconfig --[no-]verbose
r7501 if self.verbose:
print base + " execution on engine(s): %s" % str_targets
MinRK
parallel magics are no longer an extension
r7473
MinRK
update parallel magics...
r7476 result = self.view.execute(cell, silent=False, block=False)
MinRK
parallel magics are no longer an extension
r7473 self.last_result = result
if save_name:
self.shell.user_ns[save_name] = result
if block:
result.get()
result.display_outputs(groupby)
else:
# return AsyncResult only on non-blocking submission
return result
MinRK
update parallel magics...
r7476 @magic_arguments.magic_arguments()
@exec_args
@output_args
MinRK
parallel magics are no longer an extension
r7473 @skip_doctest
def cell_px(self, line='', cell=None):
MinRK
update parallel magics...
r7476 """Executes the cell in parallel.
MinRK
parallel magics are no longer an extension
r7473
MinRK
update parallel magics...
r7476 Examples
--------
::
MinRK
parallel magics are no longer an extension
r7473
In [24]: %%px --noblock
....: a = os.getpid()
Async parallel execution on engine(s): all
In [25]: %%px
....: print a
[stdout:0] 1234
[stdout:1] 1235
[stdout:2] 1236
[stdout:3] 1237
"""
MinRK
update parallel magics...
r7476 args = magic_arguments.parse_argstring(self.cell_px, line)
if args.targets:
save_targets = self.view.targets
self.view.targets = self._eval_target_str(args.targets)
MinRK
%%px --local runs local last...
r8998 # if running local, don't block until after local has run
block = False if args.local else args.block
MinRK
update parallel magics...
r7476 try:
MinRK
%%px --local runs local last...
r8998 ar = self.parallel_execute(cell, block=block,
MinRK
update parallel magics...
r7476 groupby=args.groupby,
save_name=args.save_name,
)
finally:
if args.targets:
self.view.targets = save_targets
MinRK
%%px --local runs local last...
r8998
# run locally after submitting remote
MinRK
finish up return value for %%px --local
r8999 block = self.view.block if args.block is None else args.block
MinRK
%%px --local runs local last...
r8998 if args.local:
self.shell.run_cell(cell)
# now apply blocking behavor to remote execution
if block:
ar.get()
MinRK
finish up return value for %%px --local
r8999 ar.display_outputs(args.groupby)
if not block:
return ar
MinRK
update parallel magics...
r7476
MinRK
parallel magics are no longer an extension
r7473 @skip_doctest
MinRK
update parallel magics...
r7476 def autopx(self, line=''):
MinRK
parallel magics are no longer an extension
r7473 """Toggles auto parallel mode.
MinRK
update parallel magics...
r7476 Once this is called, all commands typed at the command line are send to
the engines to be executed in parallel. To control which engine are
used, the ``targets`` attribute of the view before
entering ``%autopx`` mode.
MinRK
parallel magics are no longer an extension
r7473
Then you can do the following::
In [25]: %autopx
%autopx to enabled
In [26]: a = 10
Parallel execution on engine(s): [0,1,2,3]
In [27]: print a
Parallel execution on engine(s): [0,1,2,3]
[stdout:0] 10
[stdout:1] 10
[stdout:2] 10
[stdout:3] 10
In [27]: %autopx
%autopx disabled
"""
if self._autopx:
self._disable_autopx()
else:
self._enable_autopx()
def _enable_autopx(self):
"""Enable %autopx mode by saving the original run_cell and installing
pxrun_cell.
"""
# override run_cell
self._original_run_cell = self.shell.run_cell
self.shell.run_cell = self.pxrun_cell
self._autopx = True
print "%autopx enabled"
def _disable_autopx(self):
"""Disable %autopx by restoring the original InteractiveShell.run_cell.
"""
if self._autopx:
self.shell.run_cell = self._original_run_cell
self._autopx = False
print "%autopx disabled"
def pxrun_cell(self, raw_cell, store_history=False, silent=False):
"""drop-in replacement for InteractiveShell.run_cell.
This executes code remotely, instead of in the local namespace.
See InteractiveShell.run_cell for details.
"""
if (not raw_cell) or raw_cell.isspace():
return
ipself = self.shell
with ipself.builtin_trap:
cell = ipself.prefilter_manager.prefilter_lines(raw_cell)
# Store raw and processed history
if store_history:
ipself.history_manager.store_inputs(ipself.execution_count,
cell, raw_cell)
# ipself.logger.log(cell, raw_cell)
cell_name = ipself.compile.cache(cell, ipself.execution_count)
try:
ast.parse(cell, filename=cell_name)
except (OverflowError, SyntaxError, ValueError, TypeError,
MemoryError):
# Case 1
ipself.showsyntaxerror()
ipself.execution_count += 1
return None
except NameError:
# ignore name errors, because we don't know the remote keys
pass
if store_history:
# Write output to the database. Does nothing unless
# history output logging is enabled.
ipself.history_manager.store_output(ipself.execution_count)
# Each cell is a *single* input, regardless of how many lines it has
ipself.execution_count += 1
if re.search(r'get_ipython\(\)\.magic\(u?["\']%?autopx', cell):
self._disable_autopx()
return False
else:
try:
MinRK
update parallel magics...
r7476 result = self.view.execute(cell, silent=False, block=False)
MinRK
parallel magics are no longer an extension
r7473 except:
ipself.showtraceback()
return True
else:
MinRK
update parallel magics...
r7476 if self.view.block:
MinRK
parallel magics are no longer an extension
r7473 try:
result.get()
except:
self.shell.showtraceback()
return True
else:
with ipself.builtin_trap:
result.display_outputs()
return False
__doc__ = __doc__.format(
AUTOPX_DOC = ' '*8 + ParallelMagics.autopx.__doc__,
PX_DOC = ' '*8 + ParallelMagics.px.__doc__,
MinRK
update parallel magics...
r7476 RESULT_DOC = ' '*8 + ParallelMagics.result.__doc__,
CONFIG_DOC = ' '*8 + ParallelMagics.pxconfig.__doc__,
MinRK
parallel magics are no longer an extension
r7473 )