##// END OF EJS Templates
Do not generate output for empty figures in Qt console....
Do not generate output for empty figures in Qt console. Before, calling figure() would produce a big blank area. This ensures output is only returned if the figure has content. Also added basic testing for pylabtools, for which we had none.

File last commit:

r3673:b9f54806
r3731:57d3cb1a
Show More
launcher.py
971 lines | 33.6 KiB | text/x-python | PythonLexer
MinRK
adapt kernel's ipcluster and Launchers to newparallel
r3605 #!/usr/bin/env python
# encoding: utf-8
"""
Facilities for launching IPython processes asynchronously.
"""
#-----------------------------------------------------------------------------
# Copyright (C) 2008-2009 The IPython Development Team
#
# Distributed under the terms of the BSD License. The full license is in
# the file COPYING, distributed as part of this software.
#-----------------------------------------------------------------------------
#-----------------------------------------------------------------------------
# Imports
#-----------------------------------------------------------------------------
MinRK
adjustments to PBS/SGE, SSH Launchers + docs update
r3647 import copy
MinRK
resort imports in a cleaner order
r3631 import logging
MinRK
adapt kernel's ipcluster and Launchers to newparallel
r3605 import os
import re
MinRK
Update PBS/SGE launchers with 0.10.1 options and defaults
r3659 import stat
MinRK
adapt kernel's ipcluster and Launchers to newparallel
r3605
MinRK
untwist PBS, WinHPC Launchers in newparallel
r3613 from signal import SIGINT, SIGTERM
MinRK
adapt kernel's ipcluster and Launchers to newparallel
r3605 try:
from signal import SIGKILL
except ImportError:
SIGKILL=SIGTERM
MinRK
untwist PBS, WinHPC Launchers in newparallel
r3613 from subprocess import Popen, PIPE, STDOUT
try:
MinRK
add ipcluster engines; fix ssh process shutdown
r3615 from subprocess import check_output
MinRK
untwist PBS, WinHPC Launchers in newparallel
r3613 except ImportError:
MinRK
adjustments to PBS/SGE, SSH Launchers + docs update
r3647 # pre-2.7, define check_output with Popen
MinRK
add ipcluster engines; fix ssh process shutdown
r3615 def check_output(*args, **kwargs):
MinRK
adjustments to PBS/SGE, SSH Launchers + docs update
r3647 kwargs.update(dict(stdout=PIPE))
MinRK
untwist PBS, WinHPC Launchers in newparallel
r3613 p = Popen(*args, **kwargs)
out,err = p.communicate()
return out
MinRK
adapt kernel's ipcluster and Launchers to newparallel
r3605
from zmq.eventloop import ioloop
MinRK
untwist PBS, WinHPC Launchers in newparallel
r3613 from IPython.external import Itpl
MinRK
rework logging connections
r3610 # from IPython.config.configurable import Configurable
MinRK
Update PBS/SGE launchers with 0.10.1 options and defaults
r3659 from IPython.utils.traitlets import Any, Str, Int, List, Unicode, Dict, Instance, CUnicode
MinRK
adapt kernel's ipcluster and Launchers to newparallel
r3605 from IPython.utils.path import get_ipython_module_path
from IPython.utils.process import find_cmd, pycmd2argv, FindCmdError
MinRK
organize IPython.parallel into subpackages
r3673 from IPython.parallel.factory import LoggingFactory
MinRK
untwist PBS, WinHPC Launchers in newparallel
r3613
MinRK
add DirectView.importer contextmanager, demote targets to mutable flag...
r3665 # load winhpcjob only on Windows
MinRK
untwist PBS, WinHPC Launchers in newparallel
r3613 try:
MinRK
add DirectView.importer contextmanager, demote targets to mutable flag...
r3665 from .winhpcjob import (
MinRK
untwist PBS, WinHPC Launchers in newparallel
r3613 IPControllerTask, IPEngineTask,
IPControllerJob, IPEngineSetJob
)
except ImportError:
pass
MinRK
adapt kernel's ipcluster and Launchers to newparallel
r3605
#-----------------------------------------------------------------------------
# Paths to the kernel apps
#-----------------------------------------------------------------------------
MinRK
rebase IPython.parallel after removal of IPython.kernel...
r3672 ipcluster_cmd_argv = pycmd2argv(get_ipython_module_path(
MinRK
organize IPython.parallel into subpackages
r3673 'IPython.parallel.apps.ipclusterapp'
MinRK
adapt kernel's ipcluster and Launchers to newparallel
r3605 ))
MinRK
rebase IPython.parallel after removal of IPython.kernel...
r3672 ipengine_cmd_argv = pycmd2argv(get_ipython_module_path(
MinRK
organize IPython.parallel into subpackages
r3673 'IPython.parallel.apps.ipengineapp'
MinRK
adapt kernel's ipcluster and Launchers to newparallel
r3605 ))
MinRK
rebase IPython.parallel after removal of IPython.kernel...
r3672 ipcontroller_cmd_argv = pycmd2argv(get_ipython_module_path(
MinRK
organize IPython.parallel into subpackages
r3673 'IPython.parallel.apps.ipcontrollerapp'
MinRK
adapt kernel's ipcluster and Launchers to newparallel
r3605 ))
#-----------------------------------------------------------------------------
# Base launchers and errors
#-----------------------------------------------------------------------------
class LauncherError(Exception):
pass
class ProcessStateError(LauncherError):
pass
class UnknownStatus(LauncherError):
pass
MinRK
rework logging connections
r3610 class BaseLauncher(LoggingFactory):
MinRK
adapt kernel's ipcluster and Launchers to newparallel
r3605 """An asbtraction for starting, stopping and signaling a process."""
# In all of the launchers, the work_dir is where child processes will be
# run. This will usually be the cluster_dir, but may not be. any work_dir
# passed into the __init__ method will override the config value.
# This should not be used to set the work_dir for the actual engine
# and controller. Instead, use their own config files or the
# controller_args, engine_args attributes of the launchers to add
# the --work-dir option.
work_dir = Unicode(u'.')
loop = Instance('zmq.eventloop.ioloop.IOLoop')
MinRK
adjustments to PBS/SGE, SSH Launchers + docs update
r3647
start_data = Any()
stop_data = Any()
MinRK
adapt kernel's ipcluster and Launchers to newparallel
r3605 def _loop_default(self):
return ioloop.IOLoop.instance()
MinRK
rework logging connections
r3610 def __init__(self, work_dir=u'.', config=None, **kwargs):
super(BaseLauncher, self).__init__(work_dir=work_dir, config=config, **kwargs)
MinRK
adapt kernel's ipcluster and Launchers to newparallel
r3605 self.state = 'before' # can be before, running, after
self.stop_callbacks = []
self.start_data = None
self.stop_data = None
@property
def args(self):
"""A list of cmd and args that will be used to start the process.
This is what is passed to :func:`spawnProcess` and the first element
will be the process name.
"""
return self.find_args()
def find_args(self):
"""The ``.args`` property calls this to find the args list.
Subcommand should implement this to construct the cmd and args.
"""
raise NotImplementedError('find_args must be implemented in a subclass')
@property
def arg_str(self):
"""The string form of the program arguments."""
return ' '.join(self.args)
@property
def running(self):
"""Am I running."""
if self.state == 'running':
return True
else:
return False
def start(self):
"""Start the process.
This must return a deferred that fires with information about the
process starting (like a pid, job id, etc.).
"""
raise NotImplementedError('start must be implemented in a subclass')
def stop(self):
"""Stop the process and notify observers of stopping.
This must return a deferred that fires with information about the
processing stopping, like errors that occur while the process is
attempting to be shut down. This deferred won't fire when the process
actually stops. To observe the actual process stopping, see
:func:`observe_stop`.
"""
raise NotImplementedError('stop must be implemented in a subclass')
def on_stop(self, f):
"""Get a deferred that will fire when the process stops.
The deferred will fire with data that contains information about
the exit status of the process.
"""
if self.state=='after':
return f(self.stop_data)
else:
self.stop_callbacks.append(f)
def notify_start(self, data):
"""Call this to trigger startup actions.
This logs the process startup and sets the state to 'running'. It is
a pass-through so it can be used as a callback.
"""
MinRK
rework logging connections
r3610 self.log.info('Process %r started: %r' % (self.args[0], data))
MinRK
adapt kernel's ipcluster and Launchers to newparallel
r3605 self.start_data = data
self.state = 'running'
return data
def notify_stop(self, data):
"""Call this to trigger process stop actions.
This logs the process stopping and sets the state to 'after'. Call
this to trigger all the deferreds from :func:`observe_stop`."""
MinRK
rework logging connections
r3610 self.log.info('Process %r stopped: %r' % (self.args[0], data))
MinRK
adapt kernel's ipcluster and Launchers to newparallel
r3605 self.stop_data = data
self.state = 'after'
for i in range(len(self.stop_callbacks)):
d = self.stop_callbacks.pop()
d(data)
return data
def signal(self, sig):
"""Signal the process.
Return a semi-meaningless deferred after signaling the process.
Parameters
----------
sig : str or int
'KILL', 'INT', etc., or any signal number
"""
raise NotImplementedError('signal must be implemented in a subclass')
#-----------------------------------------------------------------------------
# Local process launchers
#-----------------------------------------------------------------------------
class LocalProcessLauncher(BaseLauncher):
"""Start and stop an external process in an asynchronous manner.
This will launch the external process with a working directory of
``self.work_dir``.
"""
# This is used to to construct self.args, which is passed to
# spawnProcess.
cmd_and_args = List([])
poll_frequency = Int(100) # in ms
MinRK
rework logging connections
r3610 def __init__(self, work_dir=u'.', config=None, **kwargs):
MinRK
adapt kernel's ipcluster and Launchers to newparallel
r3605 super(LocalProcessLauncher, self).__init__(
MinRK
rework logging connections
r3610 work_dir=work_dir, config=config, **kwargs
MinRK
adapt kernel's ipcluster and Launchers to newparallel
r3605 )
self.process = None
self.start_deferred = None
self.poller = None
def find_args(self):
return self.cmd_and_args
def start(self):
if self.state == 'before':
self.process = Popen(self.args,
stdout=PIPE,stderr=PIPE,stdin=PIPE,
env=os.environ,
cwd=self.work_dir
)
self.loop.add_handler(self.process.stdout.fileno(), self.handle_stdout, self.loop.READ)
self.loop.add_handler(self.process.stderr.fileno(), self.handle_stderr, self.loop.READ)
self.poller = ioloop.PeriodicCallback(self.poll, self.poll_frequency, self.loop)
self.poller.start()
self.notify_start(self.process.pid)
else:
s = 'The process was already started and has state: %r' % self.state
raise ProcessStateError(s)
def stop(self):
return self.interrupt_then_kill()
def signal(self, sig):
if self.state == 'running':
self.process.send_signal(sig)
def interrupt_then_kill(self, delay=2.0):
"""Send INT, wait a delay and then send KILL."""
self.signal(SIGINT)
self.killer = ioloop.DelayedCallback(lambda : self.signal(SIGKILL), delay*1000, self.loop)
self.killer.start()
# callbacks, etc:
def handle_stdout(self, fd, events):
line = self.process.stdout.readline()
# a stopped process will be readable but return empty strings
if line:
MinRK
rework logging connections
r3610 self.log.info(line[:-1])
MinRK
adapt kernel's ipcluster and Launchers to newparallel
r3605 else:
self.poll()
def handle_stderr(self, fd, events):
line = self.process.stderr.readline()
# a stopped process will be readable but return empty strings
if line:
MinRK
rework logging connections
r3610 self.log.error(line[:-1])
MinRK
adapt kernel's ipcluster and Launchers to newparallel
r3605 else:
self.poll()
def poll(self):
status = self.process.poll()
if status is not None:
self.poller.stop()
self.loop.remove_handler(self.process.stdout.fileno())
self.loop.remove_handler(self.process.stderr.fileno())
self.notify_stop(dict(exit_code=status, pid=self.process.pid))
return status
class LocalControllerLauncher(LocalProcessLauncher):
"""Launch a controller as a regular external process."""
MinRK
rebase IPython.parallel after removal of IPython.kernel...
r3672 controller_cmd = List(ipcontroller_cmd_argv, config=True)
MinRK
adapt kernel's ipcluster and Launchers to newparallel
r3605 # Command line arguments to ipcontroller.
MinRK
untwist PBS, WinHPC Launchers in newparallel
r3613 controller_args = List(['--log-to-file','--log-level', str(logging.INFO)], config=True)
MinRK
adapt kernel's ipcluster and Launchers to newparallel
r3605
def find_args(self):
return self.controller_cmd + self.controller_args
def start(self, cluster_dir):
"""Start the controller by cluster_dir."""
self.controller_args.extend(['--cluster-dir', cluster_dir])
self.cluster_dir = unicode(cluster_dir)
MinRK
rework logging connections
r3610 self.log.info("Starting LocalControllerLauncher: %r" % self.args)
MinRK
adapt kernel's ipcluster and Launchers to newparallel
r3605 return super(LocalControllerLauncher, self).start()
class LocalEngineLauncher(LocalProcessLauncher):
"""Launch a single engine as a regular externall process."""
MinRK
rebase IPython.parallel after removal of IPython.kernel...
r3672 engine_cmd = List(ipengine_cmd_argv, config=True)
MinRK
adapt kernel's ipcluster and Launchers to newparallel
r3605 # Command line arguments for ipengine.
engine_args = List(
MinRK
untwist PBS, WinHPC Launchers in newparallel
r3613 ['--log-to-file','--log-level', str(logging.INFO)], config=True
MinRK
adapt kernel's ipcluster and Launchers to newparallel
r3605 )
def find_args(self):
return self.engine_cmd + self.engine_args
def start(self, cluster_dir):
"""Start the engine by cluster_dir."""
self.engine_args.extend(['--cluster-dir', cluster_dir])
self.cluster_dir = unicode(cluster_dir)
return super(LocalEngineLauncher, self).start()
class LocalEngineSetLauncher(BaseLauncher):
"""Launch a set of engines as regular external processes."""
# Command line arguments for ipengine.
engine_args = List(
MinRK
untwist PBS, WinHPC Launchers in newparallel
r3613 ['--log-to-file','--log-level', str(logging.INFO)], config=True
MinRK
adapt kernel's ipcluster and Launchers to newparallel
r3605 )
# launcher class
launcher_class = LocalEngineLauncher
MinRK
adjustments to PBS/SGE, SSH Launchers + docs update
r3647 launchers = Dict()
stop_data = Dict()
MinRK
rework logging connections
r3610 def __init__(self, work_dir=u'.', config=None, **kwargs):
MinRK
adapt kernel's ipcluster and Launchers to newparallel
r3605 super(LocalEngineSetLauncher, self).__init__(
MinRK
rework logging connections
r3610 work_dir=work_dir, config=config, **kwargs
MinRK
adapt kernel's ipcluster and Launchers to newparallel
r3605 )
self.stop_data = {}
def start(self, n, cluster_dir):
"""Start n engines by profile or cluster_dir."""
self.cluster_dir = unicode(cluster_dir)
dlist = []
for i in range(n):
MinRK
rework logging connections
r3610 el = self.launcher_class(work_dir=self.work_dir, config=self.config, logname=self.log.name)
MinRK
adapt kernel's ipcluster and Launchers to newparallel
r3605 # Copy the engine args over to each engine launcher.
el.engine_args = copy.deepcopy(self.engine_args)
el.on_stop(self._notice_engine_stopped)
d = el.start(cluster_dir)
if i==0:
MinRK
rework logging connections
r3610 self.log.info("Starting LocalEngineSetLauncher: %r" % el.args)
MinRK
adapt kernel's ipcluster and Launchers to newparallel
r3605 self.launchers[i] = el
dlist.append(d)
self.notify_start(dlist)
# The consumeErrors here could be dangerous
# dfinal = gatherBoth(dlist, consumeErrors=True)
# dfinal.addCallback(self.notify_start)
return dlist
def find_args(self):
return ['engine set']
def signal(self, sig):
dlist = []
for el in self.launchers.itervalues():
d = el.signal(sig)
dlist.append(d)
# dfinal = gatherBoth(dlist, consumeErrors=True)
return dlist
def interrupt_then_kill(self, delay=1.0):
dlist = []
for el in self.launchers.itervalues():
d = el.interrupt_then_kill(delay)
dlist.append(d)
# dfinal = gatherBoth(dlist, consumeErrors=True)
return dlist
def stop(self):
return self.interrupt_then_kill()
def _notice_engine_stopped(self, data):
pid = data['pid']
for idx,el in self.launchers.iteritems():
if el.process.pid == pid:
break
self.launchers.pop(idx)
self.stop_data[idx] = data
if not self.launchers:
self.notify_stop(self.stop_data)
#-----------------------------------------------------------------------------
# MPIExec launchers
#-----------------------------------------------------------------------------
class MPIExecLauncher(LocalProcessLauncher):
"""Launch an external process using mpiexec."""
# The mpiexec command to use in starting the process.
mpi_cmd = List(['mpiexec'], config=True)
# The command line arguments to pass to mpiexec.
mpi_args = List([], config=True)
# The program to start using mpiexec.
program = List(['date'], config=True)
# The command line argument to the program.
program_args = List([], config=True)
# The number of instances of the program to start.
n = Int(1, config=True)
def find_args(self):
"""Build self.args using all the fields."""
MinRK
adjustments to PBS/SGE, SSH Launchers + docs update
r3647 return self.mpi_cmd + ['-n', str(self.n)] + self.mpi_args + \
MinRK
adapt kernel's ipcluster and Launchers to newparallel
r3605 self.program + self.program_args
def start(self, n):
"""Start n instances of the program using mpiexec."""
self.n = n
return super(MPIExecLauncher, self).start()
class MPIExecControllerLauncher(MPIExecLauncher):
"""Launch a controller using mpiexec."""
MinRK
rebase IPython.parallel after removal of IPython.kernel...
r3672 controller_cmd = List(ipcontroller_cmd_argv, config=True)
MinRK
adapt kernel's ipcluster and Launchers to newparallel
r3605 # Command line arguments to ipcontroller.
MinRK
untwist PBS, WinHPC Launchers in newparallel
r3613 controller_args = List(['--log-to-file','--log-level', str(logging.INFO)], config=True)
MinRK
adapt kernel's ipcluster and Launchers to newparallel
r3605 n = Int(1, config=False)
def start(self, cluster_dir):
"""Start the controller by cluster_dir."""
self.controller_args.extend(['--cluster-dir', cluster_dir])
self.cluster_dir = unicode(cluster_dir)
MinRK
rework logging connections
r3610 self.log.info("Starting MPIExecControllerLauncher: %r" % self.args)
MinRK
adapt kernel's ipcluster and Launchers to newparallel
r3605 return super(MPIExecControllerLauncher, self).start(1)
def find_args(self):
return self.mpi_cmd + ['-n', self.n] + self.mpi_args + \
self.controller_cmd + self.controller_args
class MPIExecEngineSetLauncher(MPIExecLauncher):
MinRK
rebase IPython.parallel after removal of IPython.kernel...
r3672 program = List(ipengine_cmd_argv, config=True)
MinRK
adapt kernel's ipcluster and Launchers to newparallel
r3605 # Command line arguments for ipengine.
MinRK
adjustments to PBS/SGE, SSH Launchers + docs update
r3647 program_args = List(
MinRK
untwist PBS, WinHPC Launchers in newparallel
r3613 ['--log-to-file','--log-level', str(logging.INFO)], config=True
MinRK
adapt kernel's ipcluster and Launchers to newparallel
r3605 )
n = Int(1, config=True)
def start(self, n, cluster_dir):
"""Start n engines by profile or cluster_dir."""
MinRK
adjustments to PBS/SGE, SSH Launchers + docs update
r3647 self.program_args.extend(['--cluster-dir', cluster_dir])
MinRK
adapt kernel's ipcluster and Launchers to newparallel
r3605 self.cluster_dir = unicode(cluster_dir)
self.n = n
MinRK
rework logging connections
r3610 self.log.info('Starting MPIExecEngineSetLauncher: %r' % self.args)
MinRK
adapt kernel's ipcluster and Launchers to newparallel
r3605 return super(MPIExecEngineSetLauncher, self).start(n)
#-----------------------------------------------------------------------------
# SSH launchers
#-----------------------------------------------------------------------------
# TODO: Get SSH Launcher working again.
class SSHLauncher(LocalProcessLauncher):
"""A minimal launcher for ssh.
To be useful this will probably have to be extended to use the ``sshx``
idea for environment variables. There could be other things this needs
as well.
"""
ssh_cmd = List(['ssh'], config=True)
MinRK
add ipcluster engines; fix ssh process shutdown
r3615 ssh_args = List(['-tt'], config=True)
MinRK
adapt kernel's ipcluster and Launchers to newparallel
r3605 program = List(['date'], config=True)
program_args = List([], config=True)
MinRK
Update PBS/SGE launchers with 0.10.1 options and defaults
r3659 hostname = CUnicode('', config=True)
user = CUnicode('', config=True)
location = CUnicode('')
MinRK
adapt kernel's ipcluster and Launchers to newparallel
r3605
def _hostname_changed(self, name, old, new):
MinRK
adjustments to PBS/SGE, SSH Launchers + docs update
r3647 if self.user:
MinRK
Update PBS/SGE launchers with 0.10.1 options and defaults
r3659 self.location = u'%s@%s' % (self.user, new)
MinRK
adjustments to PBS/SGE, SSH Launchers + docs update
r3647 else:
self.location = new
MinRK
adapt kernel's ipcluster and Launchers to newparallel
r3605
def _user_changed(self, name, old, new):
MinRK
Update PBS/SGE launchers with 0.10.1 options and defaults
r3659 self.location = u'%s@%s' % (new, self.hostname)
MinRK
adapt kernel's ipcluster and Launchers to newparallel
r3605
def find_args(self):
return self.ssh_cmd + self.ssh_args + [self.location] + \
self.program + self.program_args
def start(self, cluster_dir, hostname=None, user=None):
MinRK
adjustments to PBS/SGE, SSH Launchers + docs update
r3647 self.cluster_dir = unicode(cluster_dir)
MinRK
adapt kernel's ipcluster and Launchers to newparallel
r3605 if hostname is not None:
self.hostname = hostname
if user is not None:
self.user = user
MinRK
adjustments to PBS/SGE, SSH Launchers + docs update
r3647
MinRK
adapt kernel's ipcluster and Launchers to newparallel
r3605 return super(SSHLauncher, self).start()
MinRK
add ipcluster engines; fix ssh process shutdown
r3615
def signal(self, sig):
if self.state == 'running':
# send escaped ssh connection-closer
self.process.stdin.write('~.')
self.process.stdin.flush()
MinRK
adapt kernel's ipcluster and Launchers to newparallel
r3605
class SSHControllerLauncher(SSHLauncher):
MinRK
rebase IPython.parallel after removal of IPython.kernel...
r3672 program = List(ipcontroller_cmd_argv, config=True)
MinRK
adapt kernel's ipcluster and Launchers to newparallel
r3605 # Command line arguments to ipcontroller.
MinRK
adjustments to PBS/SGE, SSH Launchers + docs update
r3647 program_args = List(['-r', '--log-to-file','--log-level', str(logging.INFO)], config=True)
MinRK
adapt kernel's ipcluster and Launchers to newparallel
r3605
class SSHEngineLauncher(SSHLauncher):
MinRK
rebase IPython.parallel after removal of IPython.kernel...
r3672 program = List(ipengine_cmd_argv, config=True)
MinRK
adapt kernel's ipcluster and Launchers to newparallel
r3605 # Command line arguments for ipengine.
program_args = List(
MinRK
untwist PBS, WinHPC Launchers in newparallel
r3613 ['--log-to-file','--log-level', str(logging.INFO)], config=True
MinRK
adapt kernel's ipcluster and Launchers to newparallel
r3605 )
class SSHEngineSetLauncher(LocalEngineSetLauncher):
launcher_class = SSHEngineLauncher
MinRK
adjustments to PBS/SGE, SSH Launchers + docs update
r3647 engines = Dict(config=True)
def start(self, n, cluster_dir):
"""Start engines by profile or cluster_dir.
`n` is ignored, and the `engines` config property is used instead.
"""
self.cluster_dir = unicode(cluster_dir)
dlist = []
for host, n in self.engines.iteritems():
if isinstance(n, (tuple, list)):
n, args = n
else:
args = copy.deepcopy(self.engine_args)
if '@' in host:
user,host = host.split('@',1)
else:
user=None
for i in range(n):
el = self.launcher_class(work_dir=self.work_dir, config=self.config, logname=self.log.name)
# Copy the engine args over to each engine launcher.
i
el.program_args = args
el.on_stop(self._notice_engine_stopped)
d = el.start(cluster_dir, user=user, hostname=host)
if i==0:
self.log.info("Starting SSHEngineSetLauncher: %r" % el.args)
self.launchers[host+str(i)] = el
dlist.append(d)
self.notify_start(dlist)
return dlist
MinRK
adapt kernel's ipcluster and Launchers to newparallel
r3605
#-----------------------------------------------------------------------------
# Windows HPC Server 2008 scheduler launchers
#-----------------------------------------------------------------------------
MinRK
untwist PBS, WinHPC Launchers in newparallel
r3613 # This is only used on Windows.
def find_job_cmd():
if os.name=='nt':
try:
return find_cmd('job')
except FindCmdError:
return 'job'
else:
return 'job'
class WindowsHPCLauncher(BaseLauncher):
# A regular expression used to get the job id from the output of the
# submit_command.
job_id_regexp = Str(r'\d+', config=True)
# The filename of the instantiated job script.
MinRK
Update PBS/SGE launchers with 0.10.1 options and defaults
r3659 job_file_name = CUnicode(u'ipython_job.xml', config=True)
MinRK
untwist PBS, WinHPC Launchers in newparallel
r3613 # The full path to the instantiated job script. This gets made dynamically
# by combining the work_dir with the job_file_name.
MinRK
Update PBS/SGE launchers with 0.10.1 options and defaults
r3659 job_file = CUnicode(u'')
MinRK
untwist PBS, WinHPC Launchers in newparallel
r3613 # The hostname of the scheduler to submit the job to
MinRK
Update PBS/SGE launchers with 0.10.1 options and defaults
r3659 scheduler = CUnicode('', config=True)
job_cmd = CUnicode(find_job_cmd(), config=True)
MinRK
untwist PBS, WinHPC Launchers in newparallel
r3613
MinRK
add ipcluster engines; fix ssh process shutdown
r3615 def __init__(self, work_dir=u'.', config=None, **kwargs):
MinRK
untwist PBS, WinHPC Launchers in newparallel
r3613 super(WindowsHPCLauncher, self).__init__(
MinRK
add ipcluster engines; fix ssh process shutdown
r3615 work_dir=work_dir, config=config, **kwargs
MinRK
untwist PBS, WinHPC Launchers in newparallel
r3613 )
@property
def job_file(self):
return os.path.join(self.work_dir, self.job_file_name)
def write_job_file(self, n):
raise NotImplementedError("Implement write_job_file in a subclass.")
def find_args(self):
MinRK
Update PBS/SGE launchers with 0.10.1 options and defaults
r3659 return [u'job.exe']
MinRK
untwist PBS, WinHPC Launchers in newparallel
r3613
def parse_job_id(self, output):
"""Take the output of the submit command and return the job id."""
m = re.search(self.job_id_regexp, output)
if m is not None:
job_id = m.group()
else:
raise LauncherError("Job id couldn't be determined: %s" % output)
self.job_id = job_id
self.log.info('Job started with job id: %r' % job_id)
return job_id
def start(self, n):
"""Start n copies of the process using the Win HPC job scheduler."""
self.write_job_file(n)
args = [
'submit',
'/jobfile:%s' % self.job_file,
'/scheduler:%s' % self.scheduler
]
self.log.info("Starting Win HPC Job: %s" % (self.job_cmd + ' ' + ' '.join(args),))
# Twisted will raise DeprecationWarnings if we try to pass unicode to this
output = check_output([self.job_cmd]+args,
env=os.environ,
cwd=self.work_dir,
stderr=STDOUT
)
job_id = self.parse_job_id(output)
MinRK
adjustments to PBS/SGE, SSH Launchers + docs update
r3647 self.notify_start(job_id)
MinRK
untwist PBS, WinHPC Launchers in newparallel
r3613 return job_id
def stop(self):
args = [
'cancel',
self.job_id,
'/scheduler:%s' % self.scheduler
]
self.log.info("Stopping Win HPC Job: %s" % (self.job_cmd + ' ' + ' '.join(args),))
try:
output = check_output([self.job_cmd]+args,
env=os.environ,
cwd=self.work_dir,
stderr=STDOUT
)
except:
output = 'The job already appears to be stoppped: %r' % self.job_id
MinRK
adjustments to PBS/SGE, SSH Launchers + docs update
r3647 self.notify_stop(dict(job_id=self.job_id, output=output)) # Pass the output of the kill cmd
MinRK
untwist PBS, WinHPC Launchers in newparallel
r3613 return output
class WindowsHPCControllerLauncher(WindowsHPCLauncher):
MinRK
Update PBS/SGE launchers with 0.10.1 options and defaults
r3659 job_file_name = CUnicode(u'ipcontroller_job.xml', config=True)
MinRK
untwist PBS, WinHPC Launchers in newparallel
r3613 extra_args = List([], config=False)
def write_job_file(self, n):
job = IPControllerJob(config=self.config)
t = IPControllerTask(config=self.config)
# The tasks work directory is *not* the actual work directory of
# the controller. It is used as the base path for the stdout/stderr
# files that the scheduler redirects to.
t.work_directory = self.cluster_dir
# Add the --cluster-dir and from self.start().
t.controller_args.extend(self.extra_args)
job.add_task(t)
self.log.info("Writing job description file: %s" % self.job_file)
job.write(self.job_file)
@property
def job_file(self):
return os.path.join(self.cluster_dir, self.job_file_name)
def start(self, cluster_dir):
"""Start the controller by cluster_dir."""
self.extra_args = ['--cluster-dir', cluster_dir]
self.cluster_dir = unicode(cluster_dir)
return super(WindowsHPCControllerLauncher, self).start(1)
class WindowsHPCEngineSetLauncher(WindowsHPCLauncher):
MinRK
Update PBS/SGE launchers with 0.10.1 options and defaults
r3659 job_file_name = CUnicode(u'ipengineset_job.xml', config=True)
MinRK
untwist PBS, WinHPC Launchers in newparallel
r3613 extra_args = List([], config=False)
def write_job_file(self, n):
job = IPEngineSetJob(config=self.config)
for i in range(n):
t = IPEngineTask(config=self.config)
# The tasks work directory is *not* the actual work directory of
# the engine. It is used as the base path for the stdout/stderr
# files that the scheduler redirects to.
t.work_directory = self.cluster_dir
# Add the --cluster-dir and from self.start().
t.engine_args.extend(self.extra_args)
job.add_task(t)
self.log.info("Writing job description file: %s" % self.job_file)
job.write(self.job_file)
@property
def job_file(self):
return os.path.join(self.cluster_dir, self.job_file_name)
def start(self, n, cluster_dir):
"""Start the controller by cluster_dir."""
self.extra_args = ['--cluster-dir', cluster_dir]
self.cluster_dir = unicode(cluster_dir)
return super(WindowsHPCEngineSetLauncher, self).start(n)
#-----------------------------------------------------------------------------
# Batch (PBS) system launchers
#-----------------------------------------------------------------------------
class BatchSystemLauncher(BaseLauncher):
"""Launch an external process using a batch system.
This class is designed to work with UNIX batch systems like PBS, LSF,
GridEngine, etc. The overall model is that there are different commands
like qsub, qdel, etc. that handle the starting and stopping of the process.
This class also has the notion of a batch script. The ``batch_template``
attribute can be set to a string that is a template for the batch script.
This template is instantiated using Itpl. Thus the template can use
${n} fot the number of instances. Subclasses can add additional variables
to the template dict.
"""
# Subclasses must fill these in. See PBSEngineSet
# The name of the command line program used to submit jobs.
MinRK
Update PBS/SGE launchers with 0.10.1 options and defaults
r3659 submit_command = List([''], config=True)
MinRK
untwist PBS, WinHPC Launchers in newparallel
r3613 # The name of the command line program used to delete jobs.
MinRK
Update PBS/SGE launchers with 0.10.1 options and defaults
r3659 delete_command = List([''], config=True)
MinRK
untwist PBS, WinHPC Launchers in newparallel
r3613 # A regular expression used to get the job id from the output of the
# submit_command.
MinRK
Update PBS/SGE launchers with 0.10.1 options and defaults
r3659 job_id_regexp = CUnicode('', config=True)
MinRK
untwist PBS, WinHPC Launchers in newparallel
r3613 # The string that is the batch script template itself.
MinRK
Update PBS/SGE launchers with 0.10.1 options and defaults
r3659 batch_template = CUnicode('', config=True)
# The file that contains the batch template
batch_template_file = CUnicode(u'', config=True)
MinRK
untwist PBS, WinHPC Launchers in newparallel
r3613 # The filename of the instantiated batch script.
MinRK
Update PBS/SGE launchers with 0.10.1 options and defaults
r3659 batch_file_name = CUnicode(u'batch_script', config=True)
# The PBS Queue
queue = CUnicode(u'', config=True)
# not configurable, override in subclasses
# PBS Job Array regex
job_array_regexp = CUnicode('')
job_array_template = CUnicode('')
# PBS Queue regex
queue_regexp = CUnicode('')
queue_template = CUnicode('')
# The default batch template, override in subclasses
default_template = CUnicode('')
MinRK
untwist PBS, WinHPC Launchers in newparallel
r3613 # The full path to the instantiated batch script.
MinRK
Update PBS/SGE launchers with 0.10.1 options and defaults
r3659 batch_file = CUnicode(u'')
MinRK
launcher updates for PBS
r3645 # the format dict used with batch_template:
context = Dict()
MinRK
untwist PBS, WinHPC Launchers in newparallel
r3613
MinRK
launcher updates for PBS
r3645
def find_args(self):
MinRK
Update PBS/SGE launchers with 0.10.1 options and defaults
r3659 return self.submit_command + [self.batch_file]
MinRK
launcher updates for PBS
r3645
MinRK
add ipcluster engines; fix ssh process shutdown
r3615 def __init__(self, work_dir=u'.', config=None, **kwargs):
MinRK
untwist PBS, WinHPC Launchers in newparallel
r3613 super(BatchSystemLauncher, self).__init__(
MinRK
add ipcluster engines; fix ssh process shutdown
r3615 work_dir=work_dir, config=config, **kwargs
MinRK
untwist PBS, WinHPC Launchers in newparallel
r3613 )
self.batch_file = os.path.join(self.work_dir, self.batch_file_name)
def parse_job_id(self, output):
"""Take the output of the submit command and return the job id."""
MinRK
adjustments to PBS/SGE, SSH Launchers + docs update
r3647 m = re.search(self.job_id_regexp, output)
MinRK
untwist PBS, WinHPC Launchers in newparallel
r3613 if m is not None:
job_id = m.group()
else:
raise LauncherError("Job id couldn't be determined: %s" % output)
self.job_id = job_id
MinRK
adjustments to PBS/SGE, SSH Launchers + docs update
r3647 self.log.info('Job submitted with job id: %r' % job_id)
MinRK
untwist PBS, WinHPC Launchers in newparallel
r3613 return job_id
def write_batch_script(self, n):
"""Instantiate and write the batch script to the work_dir."""
self.context['n'] = n
MinRK
Update PBS/SGE launchers with 0.10.1 options and defaults
r3659 self.context['queue'] = self.queue
print self.context
# first priority is batch_template if set
if self.batch_template_file and not self.batch_template:
# second priority is batch_template_file
with open(self.batch_template_file) as f:
self.batch_template = f.read()
if not self.batch_template:
# third (last) priority is default_template
self.batch_template = self.default_template
regex = re.compile(self.job_array_regexp)
# print regex.search(self.batch_template)
if not regex.search(self.batch_template):
self.log.info("adding job array settings to batch script")
firstline, rest = self.batch_template.split('\n',1)
self.batch_template = u'\n'.join([firstline, self.job_array_template, rest])
regex = re.compile(self.queue_regexp)
# print regex.search(self.batch_template)
if self.queue and not regex.search(self.batch_template):
self.log.info("adding PBS queue settings to batch script")
firstline, rest = self.batch_template.split('\n',1)
self.batch_template = u'\n'.join([firstline, self.queue_template, rest])
MinRK
untwist PBS, WinHPC Launchers in newparallel
r3613 script_as_string = Itpl.itplns(self.batch_template, self.context)
self.log.info('Writing instantiated batch script: %s' % self.batch_file)
MinRK
Update PBS/SGE launchers with 0.10.1 options and defaults
r3659
with open(self.batch_file, 'w') as f:
f.write(script_as_string)
os.chmod(self.batch_file, stat.S_IRUSR | stat.S_IWUSR | stat.S_IXUSR)
MinRK
untwist PBS, WinHPC Launchers in newparallel
r3613
MinRK
launcher updates for PBS
r3645 def start(self, n, cluster_dir):
MinRK
untwist PBS, WinHPC Launchers in newparallel
r3613 """Start n copies of the process using a batch system."""
MinRK
launcher updates for PBS
r3645 # Here we save profile and cluster_dir in the context so they
# can be used in the batch script template as ${profile} and
# ${cluster_dir}
self.context['cluster_dir'] = cluster_dir
self.cluster_dir = unicode(cluster_dir)
MinRK
untwist PBS, WinHPC Launchers in newparallel
r3613 self.write_batch_script(n)
MinRK
adjustments to PBS/SGE, SSH Launchers + docs update
r3647 output = check_output(self.args, env=os.environ)
MinRK
untwist PBS, WinHPC Launchers in newparallel
r3613 job_id = self.parse_job_id(output)
MinRK
adjustments to PBS/SGE, SSH Launchers + docs update
r3647 self.notify_start(job_id)
MinRK
untwist PBS, WinHPC Launchers in newparallel
r3613 return job_id
def stop(self):
MinRK
Update PBS/SGE launchers with 0.10.1 options and defaults
r3659 output = check_output(self.delete_command+[self.job_id], env=os.environ)
MinRK
adjustments to PBS/SGE, SSH Launchers + docs update
r3647 self.notify_stop(dict(job_id=self.job_id, output=output)) # Pass the output of the kill cmd
MinRK
untwist PBS, WinHPC Launchers in newparallel
r3613 return output
class PBSLauncher(BatchSystemLauncher):
"""A BatchSystemLauncher subclass for PBS."""
MinRK
Update PBS/SGE launchers with 0.10.1 options and defaults
r3659 submit_command = List(['qsub'], config=True)
delete_command = List(['qdel'], config=True)
job_id_regexp = CUnicode(r'\d+', config=True)
batch_file = CUnicode(u'')
job_array_regexp = CUnicode('#PBS\W+-t\W+[\w\d\-\$]+')
job_array_template = CUnicode('#PBS -t 1-$n')
queue_regexp = CUnicode('#PBS\W+-q\W+\$?\w+')
queue_template = CUnicode('#PBS -q $queue')
MinRK
untwist PBS, WinHPC Launchers in newparallel
r3613
class PBSControllerLauncher(PBSLauncher):
"""Launch a controller using PBS."""
MinRK
Update PBS/SGE launchers with 0.10.1 options and defaults
r3659 batch_file_name = CUnicode(u'pbs_controller', config=True)
default_template= CUnicode("""#!/bin/sh
#PBS -V
MinRK
rebase IPython.parallel after removal of IPython.kernel...
r3672 #PBS -N ipcontroller
MinRK
Update PBS/SGE launchers with 0.10.1 options and defaults
r3659 %s --log-to-file --cluster-dir $cluster_dir
MinRK
rebase IPython.parallel after removal of IPython.kernel...
r3672 """%(' '.join(ipcontroller_cmd_argv)))
MinRK
untwist PBS, WinHPC Launchers in newparallel
r3613
def start(self, cluster_dir):
"""Start the controller by profile or cluster_dir."""
self.log.info("Starting PBSControllerLauncher: %r" % self.args)
MinRK
launcher updates for PBS
r3645 return super(PBSControllerLauncher, self).start(1, cluster_dir)
MinRK
untwist PBS, WinHPC Launchers in newparallel
r3613
class PBSEngineSetLauncher(PBSLauncher):
MinRK
Update PBS/SGE launchers with 0.10.1 options and defaults
r3659 """Launch Engines using PBS"""
batch_file_name = CUnicode(u'pbs_engines', config=True)
default_template= CUnicode(u"""#!/bin/sh
#PBS -V
MinRK
rebase IPython.parallel after removal of IPython.kernel...
r3672 #PBS -N ipengine
MinRK
Update PBS/SGE launchers with 0.10.1 options and defaults
r3659 %s --cluster-dir $cluster_dir
MinRK
rebase IPython.parallel after removal of IPython.kernel...
r3672 """%(' '.join(ipengine_cmd_argv)))
MinRK
untwist PBS, WinHPC Launchers in newparallel
r3613
def start(self, n, cluster_dir):
"""Start n engines by profile or cluster_dir."""
MinRK
SGE test related fixes...
r3668 self.log.info('Starting %i engines with PBSEngineSetLauncher: %r' % (n, self.args))
MinRK
launcher updates for PBS
r3645 return super(PBSEngineSetLauncher, self).start(n, cluster_dir)
MinRK
adapt kernel's ipcluster and Launchers to newparallel
r3605
MinRK
Update PBS/SGE launchers with 0.10.1 options and defaults
r3659 #SGE is very similar to PBS
class SGELauncher(PBSLauncher):
"""Sun GridEngine is a PBS clone with slightly different syntax"""
job_array_regexp = CUnicode('#$$\W+-t\W+[\w\d\-\$]+')
job_array_template = CUnicode('#$$ -t 1-$n')
queue_regexp = CUnicode('#$$\W+-q\W+\$?\w+')
queue_template = CUnicode('#$$ -q $queue')
class SGEControllerLauncher(SGELauncher):
"""Launch a controller using SGE."""
batch_file_name = CUnicode(u'sge_controller', config=True)
default_template= CUnicode(u"""#$$ -V
#$$ -S /bin/sh
MinRK
rebase IPython.parallel after removal of IPython.kernel...
r3672 #$$ -N ipcontroller
MinRK
Update PBS/SGE launchers with 0.10.1 options and defaults
r3659 %s --log-to-file --cluster-dir $cluster_dir
MinRK
rebase IPython.parallel after removal of IPython.kernel...
r3672 """%(' '.join(ipcontroller_cmd_argv)))
MinRK
Update PBS/SGE launchers with 0.10.1 options and defaults
r3659
def start(self, cluster_dir):
"""Start the controller by profile or cluster_dir."""
self.log.info("Starting PBSControllerLauncher: %r" % self.args)
return super(PBSControllerLauncher, self).start(1, cluster_dir)
class SGEEngineSetLauncher(SGELauncher):
"""Launch Engines with SGE"""
batch_file_name = CUnicode(u'sge_engines', config=True)
default_template = CUnicode("""#$$ -V
#$$ -S /bin/sh
MinRK
rebase IPython.parallel after removal of IPython.kernel...
r3672 #$$ -N ipengine
MinRK
Update PBS/SGE launchers with 0.10.1 options and defaults
r3659 %s --cluster-dir $cluster_dir
MinRK
rebase IPython.parallel after removal of IPython.kernel...
r3672 """%(' '.join(ipengine_cmd_argv)))
MinRK
Update PBS/SGE launchers with 0.10.1 options and defaults
r3659
def start(self, n, cluster_dir):
"""Start n engines by profile or cluster_dir."""
MinRK
SGE test related fixes...
r3668 self.log.info('Starting %i engines with SGEEngineSetLauncher: %r' % (n, self.args))
MinRK
Update PBS/SGE launchers with 0.10.1 options and defaults
r3659 return super(SGEEngineSetLauncher, self).start(n, cluster_dir)
MinRK
adapt kernel's ipcluster and Launchers to newparallel
r3605
#-----------------------------------------------------------------------------
# A launcher for ipcluster itself!
#-----------------------------------------------------------------------------
class IPClusterLauncher(LocalProcessLauncher):
"""Launch the ipcluster program in an external process."""
MinRK
rebase IPython.parallel after removal of IPython.kernel...
r3672 ipcluster_cmd = List(ipcluster_cmd_argv, config=True)
MinRK
adapt kernel's ipcluster and Launchers to newparallel
r3605 # Command line arguments to pass to ipcluster.
ipcluster_args = List(
MinRK
untwist PBS, WinHPC Launchers in newparallel
r3613 ['--clean-logs', '--log-to-file', '--log-level', str(logging.INFO)], config=True)
MinRK
adapt kernel's ipcluster and Launchers to newparallel
r3605 ipcluster_subcommand = Str('start')
ipcluster_n = Int(2)
def find_args(self):
return self.ipcluster_cmd + [self.ipcluster_subcommand] + \
['-n', repr(self.ipcluster_n)] + self.ipcluster_args
def start(self):
MinRK
rework logging connections
r3610 self.log.info("Starting ipcluster: %r" % self.args)
MinRK
adapt kernel's ipcluster and Launchers to newparallel
r3605 return super(IPClusterLauncher, self).start()