##// END OF EJS Templates
create a ipynbv3 json schema and a validator...
create a ipynbv3 json schema and a validator cf http://json-schema.org/ http://tools.ietf.org/html/draft-zyp-json-schema-03 autogenerated from http://www.jsonschema.net/index.html# then tweeked. This version makes all our notedooks in docs/example/notebooks valid

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dictdb.py
306 lines | 9.4 KiB | text/x-python | PythonLexer
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r4872 """A Task logger that presents our DB interface,
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r3579 but exists entirely in memory and implemented with dicts.
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r4018 Authors:
* Min RK
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r3579 TaskRecords are dicts of the form:
{
'msg_id' : str(uuid),
'client_uuid' : str(uuid),
'engine_uuid' : str(uuid) or None,
'header' : dict(header),
'content': dict(content),
'buffers': list(buffers),
'submitted': datetime,
'started': datetime or None,
'completed': datetime or None,
'resubmitted': datetime or None,
'result_header' : dict(header) or None,
'result_content' : dict(content) or None,
'result_buffers' : list(buffers) or None,
}
With this info, many of the special categories of tasks can be defined by query:
pending: completed is None
client's outstanding: client_uuid = uuid && completed is None
MIA: arrived is None (and completed is None)
etc.
EngineRecords are dicts of the form:
{
'eid' : int(id),
'uuid': str(uuid)
}
This may be extended, but is currently.
We support a subset of mongodb operators:
$lt,$gt,$lte,$gte,$ne,$in,$nin,$all,$mod,$exists
"""
#-----------------------------------------------------------------------------
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r4018 # Copyright (C) 2010-2011 The IPython Development Team
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r3579 #
# Distributed under the terms of the BSD License. The full license is in
# the file COPYING, distributed as part of this software.
#-----------------------------------------------------------------------------
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r7261 from copy import deepcopy as copy
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r3579 from datetime import datetime
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r4016 from IPython.config.configurable import LoggingConfigurable
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r3646
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r7533 from IPython.utils.traitlets import Dict, Unicode, Integer, Float
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r3646
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r3579 filters = {
'$lt' : lambda a,b: a < b,
'$gt' : lambda a,b: b > a,
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r3644 '$eq' : lambda a,b: a == b,
'$ne' : lambda a,b: a != b,
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r3579 '$lte': lambda a,b: a <= b,
'$gte': lambda a,b: a >= b,
'$in' : lambda a,b: a in b,
'$nin': lambda a,b: a not in b,
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r3644 '$all': lambda a,b: all([ a in bb for bb in b ]),
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r3579 '$mod': lambda a,b: a%b[0] == b[1],
'$exists' : lambda a,b: (b and a is not None) or (a is None and not b)
}
class CompositeFilter(object):
"""Composite filter for matching multiple properties."""
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r4872
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r3579 def __init__(self, dikt):
self.tests = []
self.values = []
for key, value in dikt.iteritems():
self.tests.append(filters[key])
self.values.append(value)
def __call__(self, value):
for test,check in zip(self.tests, self.values):
if not test(value, check):
return False
return True
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r4016 class BaseDB(LoggingConfigurable):
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r3604 """Empty Parent class so traitlets work on DB."""
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r3646 # base configurable traits:
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r3988 session = Unicode("")
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r3604
class DictDB(BaseDB):
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r3579 """Basic in-memory dict-based object for saving Task Records.
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r4872
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r3579 This is the first object to present the DB interface
for logging tasks out of memory.
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r4872
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r3579 The interface is based on MongoDB, so adding a MongoDB
backend should be straightforward.
"""
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r3646 _records = Dict()
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r7533 _culled_ids = set() # set of ids which have been culled
_buffer_bytes = Integer(0) # running total of the bytes in the DB
size_limit = Integer(1024*1024, config=True,
help="""The maximum total size (in bytes) of the buffers stored in the db
When the db exceeds this size, the oldest records will be culled until
the total size is under size_limit * (1-cull_fraction).
"""
)
record_limit = Integer(1024, config=True,
help="""The maximum number of records in the db
When the history exceeds this size, the first record_limit * cull_fraction
records will be culled.
"""
)
cull_fraction = Float(0.1, config=True,
help="""The fraction by which the db should culled when one of the limits is exceeded
In general, the db size will spend most of its time with a size in the range:
[limit * (1-cull_fraction), limit]
for each of size_limit and record_limit.
"""
)
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r3579 def _match_one(self, rec, tests):
"""Check if a specific record matches tests."""
for key,test in tests.iteritems():
if not test(rec.get(key, None)):
return False
return True
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r3780 def _match(self, check):
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r3579 """Find all the matches for a check dict."""
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r3780 matches = []
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r3579 tests = {}
for k,v in check.iteritems():
if isinstance(v, dict):
tests[k] = CompositeFilter(v)
else:
tests[k] = lambda o: o==v
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r3780 for rec in self._records.itervalues():
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r3579 if self._match_one(rec, tests):
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r6323 matches.append(copy(rec))
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r3780 return matches
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r3780 def _extract_subdict(self, rec, keys):
"""extract subdict of keys"""
d = {}
d['msg_id'] = rec['msg_id']
for key in keys:
d[key] = rec[key]
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r7261 return copy(d)
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# methods for monitoring size / culling history
def _add_bytes(self, rec):
for key in ('buffers', 'result_buffers'):
for buf in rec.get(key) or []:
self._buffer_bytes += len(buf)
self._maybe_cull()
def _drop_bytes(self, rec):
for key in ('buffers', 'result_buffers'):
for buf in rec.get(key) or []:
self._buffer_bytes -= len(buf)
def _cull_oldest(self, n=1):
"""cull the oldest N records"""
for msg_id in self.get_history()[:n]:
self.log.debug("Culling record: %r", msg_id)
self._culled_ids.add(msg_id)
self.drop_record(msg_id)
def _maybe_cull(self):
# cull by count:
if len(self._records) > self.record_limit:
to_cull = int(self.cull_fraction * self.record_limit)
self.log.info("%i records exceeds limit of %i, culling oldest %i",
len(self._records), self.record_limit, to_cull
)
self._cull_oldest(to_cull)
# cull by size:
if self._buffer_bytes > self.size_limit:
limit = self.size_limit * (1 - self.cull_fraction)
before = self._buffer_bytes
before_count = len(self._records)
culled = 0
while self._buffer_bytes > limit:
self._cull_oldest(1)
culled += 1
self.log.info("%i records with total buffer size %i exceeds limit: %i. Culled oldest %i records.",
before_count, before, self.size_limit, culled
)
# public API methods:
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r3579 def add_record(self, msg_id, rec):
"""Add a new Task Record, by msg_id."""
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r7859 if msg_id in self._records:
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r3579 raise KeyError("Already have msg_id %r"%(msg_id))
self._records[msg_id] = rec
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r7533 self._add_bytes(rec)
self._maybe_cull()
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r3579 def get_record(self, msg_id):
"""Get a specific Task Record, by msg_id."""
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r7533 if msg_id in self._culled_ids:
raise KeyError("Record %r has been culled for size" % msg_id)
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r6323 if not msg_id in self._records:
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r3579 raise KeyError("No such msg_id %r"%(msg_id))
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r6323 return copy(self._records[msg_id])
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r3579 def update_record(self, msg_id, rec):
"""Update the data in an existing record."""
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r7533 if msg_id in self._culled_ids:
raise KeyError("Record %r has been culled for size" % msg_id)
_rec = self._records[msg_id]
self._drop_bytes(_rec)
_rec.update(rec)
self._add_bytes(_rec)
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r3579 def drop_matching_records(self, check):
"""Remove a record from the DB."""
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r3780 matches = self._match(check)
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r7533 for rec in matches:
self._drop_bytes(rec)
del self._records[rec['msg_id']]
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r3579 def drop_record(self, msg_id):
"""Remove a record from the DB."""
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r7533 rec = self._records[msg_id]
self._drop_bytes(rec)
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r3579 del self._records[msg_id]
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r3780 def find_records(self, check, keys=None):
"""Find records matching a query dict, optionally extracting subset of keys.
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r3780 Returns dict keyed by msg_id of matching records.
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r3780 Parameters
----------
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r3780 check: dict
mongodb-style query argument
keys: list of strs [optional]
if specified, the subset of keys to extract. msg_id will *always* be
included.
"""
matches = self._match(check)
if keys:
return [ self._extract_subdict(rec, keys) for rec in matches ]
else:
return matches
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r3780 def get_history(self):
"""get all msg_ids, ordered by time submitted."""
msg_ids = self._records.keys()
return sorted(msg_ids, key=lambda m: self._records[m]['submitted'])
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r5892
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r7533
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r7509 NODATA = KeyError("NoDB backend doesn't store any data. "
"Start the Controller with a DB backend to enable resubmission / result persistence."
)
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class NoDB(BaseDB):
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r5892 """A blackhole db backend that actually stores no information.
Provides the full DB interface, but raises KeyErrors on any
method that tries to access the records. This can be used to
minimize the memory footprint of the Hub when its record-keeping
functionality is not required.
"""
def add_record(self, msg_id, record):
pass
def get_record(self, msg_id):
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r7509 raise NODATA
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def update_record(self, msg_id, record):
pass
def drop_matching_records(self, check):
pass
def drop_record(self, msg_id):
pass
def find_records(self, check, keys=None):
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r7509 raise NODATA
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def get_history(self):
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r7509 raise NODATA
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r5892