##// END OF EJS Templates
fix docstrig, replace eval by regExp...
fix docstrig, replace eval by regExp replace the `eval` to transform the `repr()` of the magic list send by the kernel by a regular expression, change the docstring to be numpy complient (I hope so)

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ipy_jot.py
312 lines | 9.1 KiB | text/x-python | PythonLexer
Ville M. Vainio
add ipy_jot.py
r1165 # -*- coding: utf-8 -*-
"""
%jot magic for lightweight persistence.
Stores variables in Struct with some notes in PicleShare database
"""
Bernardo B. Marques
remove all trailling spaces
r4872 from datetime import datetime
Brian Granger
ipapi.py => core/ipapi.py and imports updated.
r2027 from IPython.core import ipapi
ip = ipapi.get()
Ville M. Vainio
add ipy_jot.py
r1165
import pickleshare
import inspect,pickle,os,sys,textwrap
Brian Granger
FakeModule.py => core/fakemodule.py and updated tests and imports.
r2020 from IPython.core.fakemodule import FakeModule
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r4872 from IPython.utils.ipstruct import Struct
Brian Granger
Work to address the review comments on Fernando's branch....
r2498 from IPython.utils.warn import error
Ville M. Vainio
add ipy_jot.py
r1165
def refresh_variables(ip, key=None):
db = ip.db
if key is None:
keys = db.keys('jot/*')
else:
keys = db.keys('jot/'+key)
for key in keys:
# strip autorestore
justkey = os.path.basename(key)
print "Restoring from", justkey, "..."
try:
obj = db[key]
except KeyError:
print "Unable to restore variable '%s', ignoring (use %%jot -d to forget!)" % justkey
print "The error was:",sys.exc_info()[0]
else:
#print "restored",justkey,"=",obj #dbg
try:
origname = obj.name
except:
ip.user_ns[justkey] = obj
print "Restored", justkey
else:
ip.user_ns[origname] = obj['val']
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r4872 print "Restored", origname
Ville M. Vainio
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def read_variables(ip, key=None):
db = ip.db
if key is None:
return None
else:
keys = db.keys('jot/'+key)
for key in keys:
# strip autorestore
justkey = os.path.basename(key)
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r4872 print "restoring from ", justkey
Ville M. Vainio
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r1165 try:
obj = db[key]
except KeyError:
print "Unable to read variable '%s', ignoring (use %%jot -d to forget!)" % justkey
print "The error was:",sys.exc_info()[0]
else:
return obj
def detail_variables(ip, key=None):
db, get = ip.db, ip.db.get
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Ville M. Vainio
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r1165 if key is None:
keys = db.keys('jot/*')
else:
keys = db.keys('jot/'+key)
if keys:
size = max(map(len,keys))
else:
size = 0
fmthead = '%-'+str(size)+'s [%s]'
fmtbody = 'Comment:\n %s'
fmtdata = 'Data:\n %s, %s'
for key in keys:
v = get(key,'<unavailable>')
justkey = os.path.basename(key)
Bernardo B. Marques
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r4872 try:
Ville M. Vainio
add ipy_jot.py
r1165 print fmthead % (justkey, datetime.ctime(v.get('time','<unavailable>')))
print fmtbody % (v.get('comment','<unavailable>'))
d = v.get('val','unavailable')
print fmtdata % (repr(type(d)), '')
print repr(d)[0:200]
print
print
except AttributeError:
print fmt % (justkey, '<unavailable>', '<unavailable>', repr(v)[:50])
def intm(n):
try:
return int(n)
except:
return 0
def jot_obj(self, obj, name, comment=''):
"""
write obj data to the note database, with whatever that should be noted.
"""
had = self.db.keys('jot/'+name+'*')
Bernardo B. Marques
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r4872 # if it the same name but a later version, we stupidly add a number to the
Ville M. Vainio
add ipy_jot.py
r1165 # so the name doesn't collide. Any better idea?
suffix = ''
if len(had)>0:
pre = os.path.commonprefix(had)
suf = [n.split(pre)[1] for n in had]
versions = map(intm, suf)
suffix = str(max(versions)+1)
uname = 'jot/'+name+suffix
Bernardo B. Marques
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r4872 # which one works better?
Brian Granger
Continuing a massive refactor of everything.
r2205 #all = ip.shadowhist.all()
Satrajit Ghosh
History refactored and saved to json file...
r3240 all = ip.shell.history_manager.input_hist_parsed
Ville M. Vainio
add ipy_jot.py
r1165
# We may actually want to make snapshot of files that are run-ned.
Bernardo B. Marques
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r4872 # get the comment
Ville M. Vainio
add ipy_jot.py
r1165 try:
Brian Granger
Continuing a massive refactor of everything.
r2205 comment = ip.magic_edit('-x').strip()
Ville M. Vainio
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r1165 except:
print "No comment is recorded."
comment = ''
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r4872 self.db[uname] = Struct({'val':obj,
'time' : datetime.now(),
Ville M. Vainio
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r1165 'hist' : all,
'name' : name,
'comment' : comment,})
print "Jotted down notes for '%s' (%s)" % (uname, obj.__class__.__name__)
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r1165
def magic_jot(self, parameter_s=''):
"""Lightweight persistence for python variables.
Example:
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Ville M. Vainio
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r1165 ville@badger[~]|1> A = ['hello',10,'world']\\
ville@badger[~]|2> %jot A\\
ville@badger[~]|3> Exit
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Ville M. Vainio
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r1165 (IPython session is closed and started again...)
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Ville M. Vainio
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r1165 ville@badger:~$ ipython -p pysh\\
ville@badger[~]|1> print A
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r1165 ['hello', 10, 'world']
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r1165 Usage:
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Ville M. Vainio
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r1165 %jot - Show list of all variables and their current values\\
%jot -l - Show list of all variables and their current values in detail\\
%jot -l <var> - Show one variable and its current values in detail\\
%jot <var> - Store the *current* value of the variable to disk\\
%jot -d <var> - Remove the variable and its value from storage\\
%jot -z - Remove all variables from storage (disabled)\\
%jot -r <var> - Refresh/Load variable from jot (delete current vals)\\
%jot foo >a.txt - Store value of foo to new file a.txt\\
Bernardo B. Marques
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r4872 %jot foo >>a.txt - Append value of foo to file a.txt\\
Ville M. Vainio
add ipy_jot.py
r1165 It should be noted that if you change the value of a variable, you
need to %note it again if you want to persist the new value.
Bernardo B. Marques
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Ville M. Vainio
add ipy_jot.py
r1165 Note also that the variables will need to be pickleable; most basic
python types can be safely %stored.
Bernardo B. Marques
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Ville M. Vainio
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r1165 """
Bernardo B. Marques
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Ville M. Vainio
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r1165 opts,argsl = self.parse_options(parameter_s,'drzl',mode='string')
args = argsl.split(None,1)
ip = self.getapi()
db = ip.db
# delete
if opts.has_key('d'):
try:
todel = args[0]
except IndexError:
error('You must provide the variable to forget')
else:
try:
del db['jot/' + todel]
except:
error("Can't delete variable '%s'" % todel)
# reset the whole database
elif opts.has_key('z'):
print "reseting the whole database has been disabled."
#for k in db.keys('autorestore/*'):
# del db[k]
elif opts.has_key('r'):
try:
toret = args[0]
except:
print "restoring all the variables jotted down..."
refresh_variables(ip)
else:
refresh_variables(ip, toret)
elif opts.has_key('l'):
try:
tolist = args[0]
except:
print "List details for all the items."
detail_variables(ip)
else:
print "Details for", tolist, ":"
detail_variables(ip, tolist)
Bernardo B. Marques
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r4872
# run without arguments -> list noted variables & notes
Ville M. Vainio
add ipy_jot.py
r1165 elif not args:
vars = self.db.keys('jot/*')
Bernardo B. Marques
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r4872 vars.sort()
Ville M. Vainio
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r1165 if vars:
Bernardo B. Marques
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r4872 size = max(map(len,vars)) - 4
Ville M. Vainio
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r1165 else:
size = 0
Bernardo B. Marques
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Ville M. Vainio
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r1165 print 'Variables and their in-db values:'
fmt = '%-'+str(size)+'s [%s] -> %s'
get = db.get
for var in vars:
justkey = os.path.basename(var)
v = get(var,'<unavailable>')
Bernardo B. Marques
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r4872 try:
Ville M. Vainio
add ipy_jot.py
r1165 print fmt % (justkey,\
datetime.ctime(v.get('time','<unavailable>')),\
v.get('comment','<unavailable>')[:70].replace('\n',' '),)
except AttributeError:
print fmt % (justkey, '<unavailable>', '<unavailable>', repr(v)[:50])
Bernardo B. Marques
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Ville M. Vainio
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r1165 # default action - store the variable
else:
# %store foo >file.txt or >>file.txt
if len(args) > 1 and args[1].startswith('>'):
fnam = os.path.expanduser(args[1].lstrip('>').lstrip())
if args[1].startswith('>>'):
fil = open(fnam,'a')
else:
fil = open(fnam,'w')
obj = ip.ev(args[0])
print "Writing '%s' (%s) to file '%s'." % (args[0],
obj.__class__.__name__, fnam)
Bernardo B. Marques
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Ville M. Vainio
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r1165 if not isinstance (obj,basestring):
from pprint import pprint
pprint(obj,fil)
else:
fil.write(obj)
if not obj.endswith('\n'):
fil.write('\n')
Bernardo B. Marques
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Ville M. Vainio
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r1165 fil.close()
return
Bernardo B. Marques
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Ville M. Vainio
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r1165 # %note foo
try:
obj = ip.user_ns[args[0]]
except KeyError:
# this should not be alias, for aliases, use %store
print
print "Error: %s doesn't exist." % args[0]
Bernardo B. Marques
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r4872 print
Ville M. Vainio
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r1165 print "Use %note -r <var> to retrieve variables. This should not be used " +\
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r4872 "to store alias, for saving aliases, use %store"
Ville M. Vainio
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r1165 return
else:
if isinstance(inspect.getmodule(obj), FakeModule):
print textwrap.dedent("""\
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r4872 Warning:%s is %s
Ville M. Vainio
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r1165 Proper storage of interactively declared classes (or instances
of those classes) is not possible! Only instances
of classes in real modules on file system can be %%store'd.
Bernardo B. Marques
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r4872 """ % (args[0], obj) )
Ville M. Vainio
add ipy_jot.py
r1165 return
#pickled = pickle.dumps(obj)
#self.db[ 'jot/' + args[0] ] = obj
jot_obj(self, obj, args[0])
def magic_read(self, parameter_s=''):
Bernardo B. Marques
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r4872 """
Ville M. Vainio
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r1165 %read <var> - Load variable from data that is jotted down.\\
Bernardo B. Marques
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Ville M. Vainio
add ipy_jot.py
r1165 """
Bernardo B. Marques
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Ville M. Vainio
add ipy_jot.py
r1165 opts,argsl = self.parse_options(parameter_s,'drzl',mode='string')
args = argsl.split(None,1)
ip = self.getapi()
db = ip.db
#if opts.has_key('r'):
try:
toret = args[0]
except:
print "which record do you want to read out?"
return
else:
return read_variables(ip, toret)
Brian Granger
Continuing a massive refactor of everything.
r2205 ip.define_magic('jot',magic_jot)
ip.define_magic('read',magic_read)