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Merge pull request #4498 from takluyver/daemon-streamcapturer...
Merge pull request #4498 from takluyver/daemon-streamcapturer Daemon StreamCapturer The StreamCapturer should die if the main thread crashes. On Shiningpanda, a failure in another nose plugin has been causing the tests to hang, because the main thread exits, but the StreamCapturer thread is still alive. Under normal conditions, the thread will still be shut down cleanly - it will only die a messy death if the main thread does.

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serialize.py
198 lines | 6.3 KiB | text/x-python | PythonLexer
MinRK
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r6788 """serialization utilities for apply messages
Authors:
* Min RK
"""
#-----------------------------------------------------------------------------
# Copyright (C) 2010-2011 The IPython Development Team
#
# Distributed under the terms of the BSD License. The full license is in
# the file COPYING, distributed as part of this software.
#-----------------------------------------------------------------------------
#-----------------------------------------------------------------------------
# Imports
#-----------------------------------------------------------------------------
try:
import cPickle
pickle = cPickle
except:
cPickle = None
import pickle
# IPython imports
from IPython.utils import py3compat
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r8133 from IPython.utils.data import flatten
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r7967 from IPython.utils.pickleutil import (
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r9712 can, uncan, can_sequence, uncan_sequence, CannedObject,
istype, sequence_types,
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r7969 )
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r6788
if py3compat.PY3:
buffer = memoryview
#-----------------------------------------------------------------------------
# Serialization Functions
#-----------------------------------------------------------------------------
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r8033 # default values for the thresholds:
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r7967 MAX_ITEMS = 64
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r8033 MAX_BYTES = 1024
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r7967
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r8033 def _extract_buffers(obj, threshold=MAX_BYTES):
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r7967 """extract buffers larger than a certain threshold"""
buffers = []
if isinstance(obj, CannedObject) and obj.buffers:
for i,buf in enumerate(obj.buffers):
if len(buf) > threshold:
# buffer larger than threshold, prevent pickling
obj.buffers[i] = None
buffers.append(buf)
elif isinstance(buf, buffer):
# buffer too small for separate send, coerce to bytes
# because pickling buffer objects just results in broken pointers
obj.buffers[i] = bytes(buf)
return buffers
def _restore_buffers(obj, buffers):
"""restore buffers extracted by """
if isinstance(obj, CannedObject) and obj.buffers:
for i,buf in enumerate(obj.buffers):
if buf is None:
obj.buffers[i] = buffers.pop(0)
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r8033 def serialize_object(obj, buffer_threshold=MAX_BYTES, item_threshold=MAX_ITEMS):
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r6788 """Serialize an object into a list of sendable buffers.
Parameters
----------
obj : object
The object to be serialized
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r8033 buffer_threshold : int
MinRK
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r7967 The threshold (in bytes) for pulling out data buffers
to avoid pickling them.
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r8033 item_threshold : int
The maximum number of items over which canning will iterate.
Containers (lists, dicts) larger than this will be pickled without
introspection.
MinRK
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r6788
Returns
-------
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r7967 [bufs] : list of buffers representing the serialized object.
MinRK
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r6788 """
MinRK
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r7967 buffers = []
MinRK
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r9712 if istype(obj, sequence_types) and len(obj) < item_threshold:
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r7967 cobj = can_sequence(obj)
for c in cobj:
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r8033 buffers.extend(_extract_buffers(c, buffer_threshold))
MinRK
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r9712 elif istype(obj, dict) and len(obj) < item_threshold:
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r7967 cobj = {}
Thomas Kluyver
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r13360 for k in sorted(obj):
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r7967 c = can(obj[k])
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r8033 buffers.extend(_extract_buffers(c, buffer_threshold))
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r7967 cobj[k] = c
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r6788 else:
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r7967 cobj = can(obj)
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r8033 buffers.extend(_extract_buffers(cobj, buffer_threshold))
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r7967
buffers.insert(0, pickle.dumps(cobj,-1))
return buffers
def unserialize_object(buffers, g=None):
"""reconstruct an object serialized by serialize_object from data buffers.
Parameters
----------
bufs : list of buffers/bytes
g : globals to be used when uncanning
Returns
-------
(newobj, bufs) : unpacked object, and the list of remaining unused buffers.
"""
bufs = list(buffers)
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r8133 pobj = bufs.pop(0)
if not isinstance(pobj, bytes):
# a zmq message
pobj = bytes(pobj)
canned = pickle.loads(pobj)
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r9712 if istype(canned, sequence_types) and len(canned) < MAX_ITEMS:
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r7967 for c in canned:
_restore_buffers(c, bufs)
newobj = uncan_sequence(canned, g)
Stephan Rave
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r12199 elif istype(canned, dict) and len(canned) < MAX_ITEMS:
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r6788 newobj = {}
Thomas Kluyver
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r13360 for k in sorted(canned):
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r7967 c = canned[k]
_restore_buffers(c, bufs)
newobj[k] = uncan(c, g)
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r6788 else:
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r7967 _restore_buffers(canned, bufs)
newobj = uncan(canned, g)
return newobj, bufs
MinRK
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r6788
MinRK
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r8033 def pack_apply_message(f, args, kwargs, buffer_threshold=MAX_BYTES, item_threshold=MAX_ITEMS):
MinRK
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r6788 """pack up a function, args, and kwargs to be sent over the wire
MinRK
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r8033
MinRK
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r8133 Each element of args/kwargs will be canned for special treatment,
but inspection will not go any deeper than that.
Any object whose data is larger than `threshold` will not have their data copied
(only numpy arrays and bytes/buffers support zero-copy)
Message will be a list of bytes/buffers of the format:
[ cf, pinfo, <arg_bufs>, <kwarg_bufs> ]
With length at least two + len(args) + len(kwargs)
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r7967 """
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r8133
arg_bufs = flatten(serialize_object(arg, buffer_threshold, item_threshold) for arg in args)
kw_keys = sorted(kwargs.keys())
kwarg_bufs = flatten(serialize_object(kwargs[key], buffer_threshold, item_threshold) for key in kw_keys)
info = dict(nargs=len(args), narg_bufs=len(arg_bufs), kw_keys=kw_keys)
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r6788 msg = [pickle.dumps(can(f),-1)]
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r8133 msg.append(pickle.dumps(info, -1))
msg.extend(arg_bufs)
msg.extend(kwarg_bufs)
MinRK
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r6788 return msg
def unpack_apply_message(bufs, g=None, copy=True):
"""unpack f,args,kwargs from buffers packed by pack_apply_message()
Returns: original f,args,kwargs"""
bufs = list(bufs) # allow us to pop
MinRK
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r8133 assert len(bufs) >= 2, "not enough buffers!"
MinRK
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r6788 if not copy:
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r8133 for i in range(2):
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r6788 bufs[i] = bufs[i].bytes
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r7967 f = uncan(pickle.loads(bufs.pop(0)), g)
MinRK
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r8133 info = pickle.loads(bufs.pop(0))
arg_bufs, kwarg_bufs = bufs[:info['narg_bufs']], bufs[info['narg_bufs']:]
args = []
for i in range(info['nargs']):
arg, arg_bufs = unserialize_object(arg_bufs, g)
args.append(arg)
args = tuple(args)
assert not arg_bufs, "Shouldn't be any arg bufs left over"
kwargs = {}
for key in info['kw_keys']:
kwarg, kwarg_bufs = unserialize_object(kwarg_bufs, g)
kwargs[key] = kwarg
assert not kwarg_bufs, "Shouldn't be any kwarg bufs left over"
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r6788
return f,args,kwargs