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Finished initial reworking and updating of setup.py and friends, including the MANIFEST.in. Everything seems...
Finished initial reworking and updating of setup.py and friends, including the MANIFEST.in. Everything seems to work fine. I have also gone through the tests in various subpackages (like kernel) and have protected imports of twisted, zope.interface and foolscap with a try/except clause. Now the tests are simply not run if these deps are missing. All tests now pass no matter what.

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multiengineclient.py
840 lines | 32.4 KiB | text/x-python | PythonLexer
/ IPython / kernel / multiengineclient.py
Brian E Granger
This is a manual merge of certain things in the ipython1-dev branch, revision 46, into the main ...
r1234 # encoding: utf-8
# -*- test-case-name: IPython.kernel.test.test_multiengineclient -*-
"""General Classes for IMultiEngine clients."""
__docformat__ = "restructuredtext en"
#-------------------------------------------------------------------------------
# Copyright (C) 2008 The IPython Development Team
#
# Distributed under the terms of the BSD License. The full license is in
# the file COPYING, distributed as part of this software.
#-------------------------------------------------------------------------------
#-------------------------------------------------------------------------------
# Imports
#-------------------------------------------------------------------------------
import sys
import cPickle as pickle
from types import FunctionType
import linecache
from twisted.internet import reactor
from twisted.python import components, log
from twisted.python.failure import Failure
from zope.interface import Interface, implements, Attribute
from IPython.ColorANSI import TermColors
from IPython.kernel.twistedutil import blockingCallFromThread
from IPython.kernel import error
from IPython.kernel.parallelfunction import ParallelFunction
from IPython.kernel import map as Map
from IPython.kernel import multiengine as me
from IPython.kernel.multiengine import (IFullMultiEngine,
IFullSynchronousMultiEngine)
#-------------------------------------------------------------------------------
# Pending Result things
#-------------------------------------------------------------------------------
class IPendingResult(Interface):
"""A representation of a result that is pending.
This class is similar to Twisted's `Deferred` object, but is designed to be
used in a synchronous context.
"""
result_id=Attribute("ID of the deferred on the other side")
client=Attribute("A client that I came from")
r=Attribute("An attribute that is a property that calls and returns get_result")
def get_result(default=None, block=True):
"""
Get a result that is pending.
:Parameters:
default
The value to return if the result is not ready.
block : boolean
Should I block for the result.
:Returns: The actual result or the default value.
"""
def add_callback(f, *args, **kwargs):
"""
Add a callback that is called with the result.
If the original result is foo, adding a callback will cause
f(foo, *args, **kwargs) to be returned instead. If multiple
callbacks are registered, they are chained together: the result of
one is passed to the next and so on.
Unlike Twisted's Deferred object, there is no errback chain. Thus
any exception raised will not be caught and handled. User must
catch these by hand when calling `get_result`.
"""
class PendingResult(object):
"""A representation of a result that is not yet ready.
A user should not create a `PendingResult` instance by hand.
Methods
=======
* `get_result`
* `add_callback`
Properties
==========
* `r`
"""
def __init__(self, client, result_id):
"""Create a PendingResult with a result_id and a client instance.
The client should implement `_getPendingResult(result_id, block)`.
"""
self.client = client
self.result_id = result_id
self.called = False
self.raised = False
self.callbacks = []
def get_result(self, default=None, block=True):
"""Get a result that is pending.
This method will connect to an IMultiEngine adapted controller
and see if the result is ready. If the action triggers an exception
raise it and record it. This method records the result/exception once it is
retrieved. Calling `get_result` again will get this cached result or will
re-raise the exception. The .r attribute is a property that calls
`get_result` with block=True.
:Parameters:
default
The value to return if the result is not ready.
block : boolean
Should I block for the result.
:Returns: The actual result or the default value.
"""
if self.called:
if self.raised:
raise self.result[0], self.result[1], self.result[2]
else:
return self.result
try:
result = self.client.get_pending_deferred(self.result_id, block)
except error.ResultNotCompleted:
return default
except:
# Reraise other error, but first record them so they can be reraised
# later if .r or get_result is called again.
self.result = sys.exc_info()
self.called = True
self.raised = True
raise
else:
for cb in self.callbacks:
result = cb[0](result, *cb[1], **cb[2])
self.result = result
self.called = True
return result
def add_callback(self, f, *args, **kwargs):
"""Add a callback that is called with the result.
If the original result is result, adding a callback will cause
f(result, *args, **kwargs) to be returned instead. If multiple
callbacks are registered, they are chained together: the result of
one is passed to the next and so on.
Unlike Twisted's Deferred object, there is no errback chain. Thus
any exception raised will not be caught and handled. User must
catch these by hand when calling `get_result`.
"""
assert callable(f)
self.callbacks.append((f, args, kwargs))
def __cmp__(self, other):
if self.result_id < other.result_id:
return -1
else:
return 1
def _get_r(self):
return self.get_result(block=True)
r = property(_get_r)
"""This property is a shortcut to a `get_result(block=True)`."""
#-------------------------------------------------------------------------------
# Pretty printing wrappers for certain lists
#-------------------------------------------------------------------------------
class ResultList(list):
"""A subclass of list that pretty prints the output of `execute`/`get_result`."""
def __repr__(self):
output = []
blue = TermColors.Blue
normal = TermColors.Normal
red = TermColors.Red
green = TermColors.Green
output.append("<Results List>\n")
for cmd in self:
if isinstance(cmd, Failure):
output.append(cmd)
else:
target = cmd.get('id',None)
cmd_num = cmd.get('number',None)
cmd_stdin = cmd.get('input',{}).get('translated','No Input')
cmd_stdout = cmd.get('stdout', None)
cmd_stderr = cmd.get('stderr', None)
output.append("%s[%i]%s In [%i]:%s %s\n" % \
(green, target,
blue, cmd_num, normal, cmd_stdin))
if cmd_stdout:
output.append("%s[%i]%s Out[%i]:%s %s\n" % \
(green, target,
red, cmd_num, normal, cmd_stdout))
if cmd_stderr:
output.append("%s[%i]%s Err[%i]:\n%s %s" % \
(green, target,
red, cmd_num, normal, cmd_stderr))
return ''.join(output)
def wrapResultList(result):
"""A function that wraps the output of `execute`/`get_result` -> `ResultList`."""
if len(result) == 0:
result = [result]
return ResultList(result)
class QueueStatusList(list):
"""A subclass of list that pretty prints the output of `queue_status`."""
def __repr__(self):
output = []
output.append("<Queue Status List>\n")
for e in self:
output.append("Engine: %s\n" % repr(e[0]))
output.append(" Pending: %s\n" % repr(e[1]['pending']))
for q in e[1]['queue']:
output.append(" Command: %s\n" % repr(q))
return ''.join(output)
#-------------------------------------------------------------------------------
# InteractiveMultiEngineClient
#-------------------------------------------------------------------------------
class InteractiveMultiEngineClient(object):
"""A mixin class that add a few methods to a multiengine client.
The methods in this mixin class are designed for interactive usage.
"""
def activate(self):
"""Make this `MultiEngineClient` active for parallel magic commands.
IPython has a magic command syntax to work with `MultiEngineClient` objects.
In a given IPython session there is a single active one. While
there can be many `MultiEngineClient` created and used by the user,
there is only one active one. The active `MultiEngineClient` is used whenever
the magic commands %px and %autopx are used.
The activate() method is called on a given `MultiEngineClient` to make it
active. Once this has been done, the magic commands can be used.
"""
try:
__IPYTHON__.activeController = self
except NameError:
print "The IPython Controller magics only work within IPython."
def __setitem__(self, key, value):
"""Add a dictionary interface for pushing/pulling.
This functions as a shorthand for `push`.
:Parameters:
key : str
What to call the remote object.
value : object
The local Python object to push.
"""
targets, block = self._findTargetsAndBlock()
return self.push({key:value}, targets=targets, block=block)
def __getitem__(self, key):
"""Add a dictionary interface for pushing/pulling.
This functions as a shorthand to `pull`.
:Parameters:
- `key`: A string representing the key.
"""
if isinstance(key, str):
targets, block = self._findTargetsAndBlock()
return self.pull(key, targets=targets, block=block)
else:
raise TypeError("__getitem__ only takes strs")
def __len__(self):
"""Return the number of available engines."""
return len(self.get_ids())
def parallelize(self, func, targets=None, block=None):
"""Build a `ParallelFunction` object for functionName on engines.
The returned object will implement a parallel version of functionName
that takes a local sequence as its only argument and calls (in
parallel) functionName on each element of that sequence. The
`ParallelFunction` object has a `targets` attribute that controls
which engines the function is run on.
:Parameters:
targets : int, list or 'all'
The engine ids the action will apply to. Call `get_ids` to see
a list of currently available engines.
functionName : str
A Python string that names a callable defined on the engines.
:Returns: A `ParallelFunction` object.
Examples
========
>>> psin = rc.parallelize('all','lambda x:sin(x)')
>>> psin(range(10000))
[0,2,4,9,25,36,...]
"""
targets, block = self._findTargetsAndBlock(targets, block)
return ParallelFunction(func, self, targets, block)
#---------------------------------------------------------------------------
# Make this a context manager for with
#---------------------------------------------------------------------------
def findsource_file(self,f):
linecache.checkcache()
s = findsource(f.f_code)
lnum = f.f_lineno
wsource = s[0][f.f_lineno:]
return strip_whitespace(wsource)
def findsource_ipython(self,f):
from IPython import ipapi
self.ip = ipapi.get()
wsource = [l+'\n' for l in
self.ip.IP.input_hist_raw[-1].splitlines()[1:]]
return strip_whitespace(wsource)
def __enter__(self):
f = sys._getframe(1)
local_ns = f.f_locals
global_ns = f.f_globals
if f.f_code.co_filename == '<ipython console>':
s = self.findsource_ipython(f)
else:
s = self.findsource_file(f)
self._with_context_result = self.execute(s)
def __exit__ (self, etype, value, tb):
if issubclass(etype,error.StopLocalExecution):
return True
def remote():
m = 'Special exception to stop local execution of parallel code.'
raise error.StopLocalExecution(m)
def strip_whitespace(source):
# Expand tabs to avoid any confusion.
wsource = [l.expandtabs(4) for l in source]
# Detect the indentation level
done = False
for line in wsource:
if line.isspace():
continue
for col,char in enumerate(line):
if char != ' ':
done = True
break
if done:
break
# Now we know how much leading space there is in the code. Next, we
# extract up to the first line that has less indentation.
# WARNINGS: we skip comments that may be misindented, but we do NOT yet
# detect triple quoted strings that may have flush left text.
for lno,line in enumerate(wsource):
lead = line[:col]
if lead.isspace():
continue
else:
if not lead.lstrip().startswith('#'):
break
# The real 'with' source is up to lno
src_lines = [l[col:] for l in wsource[:lno+1]]
# Finally, check that the source's first non-comment line begins with the
# special call 'remote()'
for nline,line in enumerate(src_lines):
if line.isspace() or line.startswith('#'):
continue
if 'remote()' in line:
break
else:
raise ValueError('remote() call missing at the start of code')
src = ''.join(src_lines[nline+1:])
#print 'SRC:\n<<<<<<<>>>>>>>\n%s<<<<<>>>>>>' % src # dbg
return src
#-------------------------------------------------------------------------------
# The top-level MultiEngine client adaptor
#-------------------------------------------------------------------------------
class IFullBlockingMultiEngineClient(Interface):
pass
class FullBlockingMultiEngineClient(InteractiveMultiEngineClient):
"""
A blocking client to the `IMultiEngine` controller interface.
This class allows users to use a set of engines for a parallel
computation through the `IMultiEngine` interface. In this interface,
each engine has a specific id (an int) that is used to refer to the
engine, run code on it, etc.
"""
implements(IFullBlockingMultiEngineClient)
def __init__(self, smultiengine):
self.smultiengine = smultiengine
self.block = True
self.targets = 'all'
def _findBlock(self, block=None):
if block is None:
return self.block
else:
if block in (True, False):
return block
else:
raise ValueError("block must be True or False")
def _findTargets(self, targets=None):
if targets is None:
return self.targets
else:
if not isinstance(targets, (str,list,tuple,int)):
raise ValueError("targets must be a str, list, tuple or int")
return targets
def _findTargetsAndBlock(self, targets=None, block=None):
return self._findTargets(targets), self._findBlock(block)
def _blockFromThread(self, function, *args, **kwargs):
block = kwargs.get('block', None)
if block is None:
raise error.MissingBlockArgument("'block' keyword argument is missing")
result = blockingCallFromThread(function, *args, **kwargs)
if not block:
result = PendingResult(self, result)
return result
def get_pending_deferred(self, deferredID, block):
return blockingCallFromThread(self.smultiengine.get_pending_deferred, deferredID, block)
def barrier(self, pendingResults):
"""Synchronize a set of `PendingResults`.
This method is a synchronization primitive that waits for a set of
`PendingResult` objects to complete. More specifically, barier does
the following.
* The `PendingResult`s are sorted by result_id.
* The `get_result` method is called for each `PendingResult` sequentially
with block=True.
* If a `PendingResult` gets a result that is an exception, it is
trapped and can be re-raised later by calling `get_result` again.
* The `PendingResult`s are flushed from the controller.
After barrier has been called on a `PendingResult`, its results can
be retrieved by calling `get_result` again or accesing the `r` attribute
of the instance.
"""
# Convert to list for sorting and check class type
prList = list(pendingResults)
for pr in prList:
if not isinstance(pr, PendingResult):
raise error.NotAPendingResult("Objects passed to barrier must be PendingResult instances")
# Sort the PendingResults so they are in order
prList.sort()
# Block on each PendingResult object
for pr in prList:
try:
result = pr.get_result(block=True)
except Exception:
pass
def flush(self):
"""
Clear all pending deferreds/results from the controller.
For each `PendingResult` that is created by this client, the controller
holds on to the result for that `PendingResult`. This can be a problem
if there are a large number of `PendingResult` objects that are created.
Once the result of the `PendingResult` has been retrieved, the result
is removed from the controller, but if a user doesn't get a result (
they just ignore the `PendingResult`) the result is kept forever on the
controller. This method allows the user to clear out all un-retrieved
results on the controller.
"""
r = blockingCallFromThread(self.smultiengine.clear_pending_deferreds)
return r
clear_pending_results = flush
#---------------------------------------------------------------------------
# IEngineMultiplexer related methods
#---------------------------------------------------------------------------
def execute(self, lines, targets=None, block=None):
"""
Execute code on a set of engines.
:Parameters:
lines : str
The Python code to execute as a string
targets : id or list of ids
The engine to use for the execution
block : boolean
If False, this method will return the actual result. If False,
a `PendingResult` is returned which can be used to get the result
at a later time.
"""
targets, block = self._findTargetsAndBlock(targets, block)
result = blockingCallFromThread(self.smultiengine.execute, lines,
targets=targets, block=block)
if block:
result = ResultList(result)
else:
result = PendingResult(self, result)
result.add_callback(wrapResultList)
return result
def push(self, namespace, targets=None, block=None):
"""
Push a dictionary of keys and values to engines namespace.
Each engine has a persistent namespace. This method is used to push
Python objects into that namespace.
The objects in the namespace must be pickleable.
:Parameters:
namespace : dict
A dict that contains Python objects to be injected into
the engine persistent namespace.
targets : id or list of ids
The engine to use for the execution
block : boolean
If False, this method will return the actual result. If False,
a `PendingResult` is returned which can be used to get the result
at a later time.
"""
targets, block = self._findTargetsAndBlock(targets, block)
return self._blockFromThread(self.smultiengine.push, namespace,
targets=targets, block=block)
def pull(self, keys, targets=None, block=None):
"""
Pull Python objects by key out of engines namespaces.
:Parameters:
keys : str or list of str
The names of the variables to be pulled
targets : id or list of ids
The engine to use for the execution
block : boolean
If False, this method will return the actual result. If False,
a `PendingResult` is returned which can be used to get the result
at a later time.
"""
targets, block = self._findTargetsAndBlock(targets, block)
return self._blockFromThread(self.smultiengine.pull, keys, targets=targets, block=block)
def push_function(self, namespace, targets=None, block=None):
"""
Push a Python function to an engine.
This method is used to push a Python function to an engine. This
method can then be used in code on the engines. Closures are not supported.
:Parameters:
namespace : dict
A dict whose values are the functions to be pushed. The keys give
that names that the function will appear as in the engines
namespace.
targets : id or list of ids
The engine to use for the execution
block : boolean
If False, this method will return the actual result. If False,
a `PendingResult` is returned which can be used to get the result
at a later time.
"""
targets, block = self._findTargetsAndBlock(targets, block)
return self._blockFromThread(self.smultiengine.push_function, namespace, targets=targets, block=block)
def pull_function(self, keys, targets=None, block=None):
"""
Pull a Python function from an engine.
This method is used to pull a Python function from an engine.
Closures are not supported.
:Parameters:
keys : str or list of str
The names of the functions to be pulled
targets : id or list of ids
The engine to use for the execution
block : boolean
If False, this method will return the actual result. If False,
a `PendingResult` is returned which can be used to get the result
at a later time.
"""
targets, block = self._findTargetsAndBlock(targets, block)
return self._blockFromThread(self.smultiengine.pull_function, keys, targets=targets, block=block)
def push_serialized(self, namespace, targets=None, block=None):
targets, block = self._findTargetsAndBlock(targets, block)
return self._blockFromThread(self.smultiengine.push_serialized, namespace, targets=targets, block=block)
def pull_serialized(self, keys, targets=None, block=None):
targets, block = self._findTargetsAndBlock(targets, block)
return self._blockFromThread(self.smultiengine.pull_serialized, keys, targets=targets, block=block)
def get_result(self, i=None, targets=None, block=None):
"""
Get a previous result.
When code is executed in an engine, a dict is created and returned. This
method retrieves that dict for previous commands.
:Parameters:
i : int
The number of the result to get
targets : id or list of ids
The engine to use for the execution
block : boolean
If False, this method will return the actual result. If False,
a `PendingResult` is returned which can be used to get the result
at a later time.
"""
targets, block = self._findTargetsAndBlock(targets, block)
result = blockingCallFromThread(self.smultiengine.get_result, i, targets=targets, block=block)
if block:
result = ResultList(result)
else:
result = PendingResult(self, result)
result.add_callback(wrapResultList)
return result
def reset(self, targets=None, block=None):
"""
Reset an engine.
This method clears out the namespace of an engine.
:Parameters:
targets : id or list of ids
The engine to use for the execution
block : boolean
If False, this method will return the actual result. If False,
a `PendingResult` is returned which can be used to get the result
at a later time.
"""
targets, block = self._findTargetsAndBlock(targets, block)
return self._blockFromThread(self.smultiengine.reset, targets=targets, block=block)
def keys(self, targets=None, block=None):
"""
Get a list of all the variables in an engine's namespace.
:Parameters:
targets : id or list of ids
The engine to use for the execution
block : boolean
If False, this method will return the actual result. If False,
a `PendingResult` is returned which can be used to get the result
at a later time.
"""
targets, block = self._findTargetsAndBlock(targets, block)
return self._blockFromThread(self.smultiengine.keys, targets=targets, block=block)
def kill(self, controller=False, targets=None, block=None):
"""
Kill the engines and controller.
This method is used to stop the engine and controller by calling
`reactor.stop`.
:Parameters:
controller : boolean
If True, kill the engines and controller. If False, just the
engines
targets : id or list of ids
The engine to use for the execution
block : boolean
If False, this method will return the actual result. If False,
a `PendingResult` is returned which can be used to get the result
at a later time.
"""
targets, block = self._findTargetsAndBlock(targets, block)
return self._blockFromThread(self.smultiengine.kill, controller, targets=targets, block=block)
def clear_queue(self, targets=None, block=None):
"""
Clear out the controller's queue for an engine.
The controller maintains a queue for each engine. This clear it out.
:Parameters:
targets : id or list of ids
The engine to use for the execution
block : boolean
If False, this method will return the actual result. If False,
a `PendingResult` is returned which can be used to get the result
at a later time.
"""
targets, block = self._findTargetsAndBlock(targets, block)
return self._blockFromThread(self.smultiengine.clear_queue, targets=targets, block=block)
def queue_status(self, targets=None, block=None):
"""
Get the status of an engines queue.
:Parameters:
targets : id or list of ids
The engine to use for the execution
block : boolean
If False, this method will return the actual result. If False,
a `PendingResult` is returned which can be used to get the result
at a later time.
"""
targets, block = self._findTargetsAndBlock(targets, block)
return self._blockFromThread(self.smultiengine.queue_status, targets=targets, block=block)
def set_properties(self, properties, targets=None, block=None):
targets, block = self._findTargetsAndBlock(targets, block)
return self._blockFromThread(self.smultiengine.set_properties, properties, targets=targets, block=block)
def get_properties(self, keys=None, targets=None, block=None):
targets, block = self._findTargetsAndBlock(targets, block)
return self._blockFromThread(self.smultiengine.get_properties, keys, targets=targets, block=block)
def has_properties(self, keys, targets=None, block=None):
targets, block = self._findTargetsAndBlock(targets, block)
return self._blockFromThread(self.smultiengine.has_properties, keys, targets=targets, block=block)
def del_properties(self, keys, targets=None, block=None):
targets, block = self._findTargetsAndBlock(targets, block)
return self._blockFromThread(self.smultiengine.del_properties, keys, targets=targets, block=block)
def clear_properties(self, targets=None, block=None):
targets, block = self._findTargetsAndBlock(targets, block)
return self._blockFromThread(self.smultiengine.clear_properties, targets=targets, block=block)
#---------------------------------------------------------------------------
# IMultiEngine related methods
#---------------------------------------------------------------------------
def get_ids(self):
"""
Returns the ids of currently registered engines.
"""
result = blockingCallFromThread(self.smultiengine.get_ids)
return result
#---------------------------------------------------------------------------
# IMultiEngineCoordinator
#---------------------------------------------------------------------------
def scatter(self, key, seq, style='basic', flatten=False, targets=None, block=None):
"""
Partition a Python sequence and send the partitions to a set of engines.
"""
targets, block = self._findTargetsAndBlock(targets, block)
return self._blockFromThread(self.smultiengine.scatter, key, seq,
style, flatten, targets=targets, block=block)
def gather(self, key, style='basic', targets=None, block=None):
"""
Gather a partitioned sequence on a set of engines as a single local seq.
"""
targets, block = self._findTargetsAndBlock(targets, block)
return self._blockFromThread(self.smultiengine.gather, key, style,
targets=targets, block=block)
def map(self, func, seq, style='basic', targets=None, block=None):
"""
A parallelized version of Python's builtin map
"""
targets, block = self._findTargetsAndBlock(targets, block)
return self._blockFromThread(self.smultiengine.map, func, seq,
style, targets=targets, block=block)
#---------------------------------------------------------------------------
# IMultiEngineExtras
#---------------------------------------------------------------------------
def zip_pull(self, keys, targets=None, block=None):
targets, block = self._findTargetsAndBlock(targets, block)
return self._blockFromThread(self.smultiengine.zip_pull, keys,
targets=targets, block=block)
def run(self, filename, targets=None, block=None):
"""
Run a Python code in a file on the engines.
:Parameters:
filename : str
The name of the local file to run
targets : id or list of ids
The engine to use for the execution
block : boolean
If False, this method will return the actual result. If False,
a `PendingResult` is returned which can be used to get the result
at a later time.
"""
targets, block = self._findTargetsAndBlock(targets, block)
return self._blockFromThread(self.smultiengine.run, filename,
targets=targets, block=block)
components.registerAdapter(FullBlockingMultiEngineClient,
IFullSynchronousMultiEngine, IFullBlockingMultiEngineClient)