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Add little soma workflow example
Add little soma workflow example

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dictdb.py
151 lines | 4.6 KiB | text/x-python | PythonLexer
MinRK
Started DB backend with mongoDB support.
r3579 """A Task logger that presents our DB interface,
but exists entirely in memory and implemented with dicts.
TaskRecords are dicts of the form:
{
'msg_id' : str(uuid),
'client_uuid' : str(uuid),
'engine_uuid' : str(uuid) or None,
'header' : dict(header),
'content': dict(content),
'buffers': list(buffers),
'submitted': datetime,
'started': datetime or None,
'completed': datetime or None,
'resubmitted': datetime or None,
'result_header' : dict(header) or None,
'result_content' : dict(content) or None,
'result_buffers' : list(buffers) or None,
}
With this info, many of the special categories of tasks can be defined by query:
pending: completed is None
client's outstanding: client_uuid = uuid && completed is None
MIA: arrived is None (and completed is None)
etc.
EngineRecords are dicts of the form:
{
'eid' : int(id),
'uuid': str(uuid)
}
This may be extended, but is currently.
We support a subset of mongodb operators:
$lt,$gt,$lte,$gte,$ne,$in,$nin,$all,$mod,$exists
"""
#-----------------------------------------------------------------------------
# Copyright (C) 2010 The IPython Development Team
#
# Distributed under the terms of the BSD License. The full license is in
# the file COPYING, distributed as part of this software.
#-----------------------------------------------------------------------------
from datetime import datetime
filters = {
'$eq' : lambda a,b: a==b,
'$lt' : lambda a,b: a < b,
'$gt' : lambda a,b: b > a,
'$lte': lambda a,b: a <= b,
'$gte': lambda a,b: a >= b,
'$ne' : lambda a,b: not a==b,
'$in' : lambda a,b: a in b,
'$nin': lambda a,b: a not in b,
'$all' : lambda a,b: all([ a in bb for bb in b ]),
'$mod': lambda a,b: a%b[0] == b[1],
'$exists' : lambda a,b: (b and a is not None) or (a is None and not b)
}
class CompositeFilter(object):
"""Composite filter for matching multiple properties."""
def __init__(self, dikt):
self.tests = []
self.values = []
for key, value in dikt.iteritems():
self.tests.append(filters[key])
self.values.append(value)
def __call__(self, value):
for test,check in zip(self.tests, self.values):
if not test(value, check):
return False
return True
MinRK
Refactor newparallel to use Config system...
r3604 class BaseDB(object):
"""Empty Parent class so traitlets work on DB."""
pass
class DictDB(BaseDB):
MinRK
Started DB backend with mongoDB support.
r3579 """Basic in-memory dict-based object for saving Task Records.
This is the first object to present the DB interface
for logging tasks out of memory.
The interface is based on MongoDB, so adding a MongoDB
backend should be straightforward.
"""
_records = None
def __init__(self):
self._records = dict()
def _match_one(self, rec, tests):
"""Check if a specific record matches tests."""
for key,test in tests.iteritems():
if not test(rec.get(key, None)):
return False
return True
def _match(self, check, id_only=True):
"""Find all the matches for a check dict."""
matches = {}
tests = {}
for k,v in check.iteritems():
if isinstance(v, dict):
tests[k] = CompositeFilter(v)
else:
tests[k] = lambda o: o==v
for msg_id, rec in self._records.iteritems():
if self._match_one(rec, tests):
matches[msg_id] = rec
if id_only:
return matches.keys()
else:
return matches
def add_record(self, msg_id, rec):
"""Add a new Task Record, by msg_id."""
if self._records.has_key(msg_id):
raise KeyError("Already have msg_id %r"%(msg_id))
self._records[msg_id] = rec
def get_record(self, msg_id):
"""Get a specific Task Record, by msg_id."""
if not self._records.has_key(msg_id):
raise KeyError("No such msg_id %r"%(msg_id))
return self._records[msg_id]
def update_record(self, msg_id, rec):
"""Update the data in an existing record."""
self._records[msg_id].update(rec)
def drop_matching_records(self, check):
"""Remove a record from the DB."""
matches = self._match(check, id_only=True)
for m in matches:
del self._records[m]
def drop_record(self, msg_id):
"""Remove a record from the DB."""
del self._records[msg_id]
def find_records(self, check, id_only=False):
"""Find records matching a query dict."""
matches = self._match(check, id_only)
return matches