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Merge pull request #6977 from minrk/finish-5384...
Merge pull request #6977 from minrk/finish-5384 Add authentication configuration

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history.py
870 lines | 30.5 KiB | text/x-python | PythonLexer
vivainio
crlf normalization
r851 """ History related magics and functionality """
Fernando Perez
Created HistoryManager to better organize history control....
r3079 #-----------------------------------------------------------------------------
Matthias BUSSONNIER
update copyright to 2011/20xx-2011...
r5390 # Copyright (C) 2010-2011 The IPython Development Team.
Fernando Perez
Created HistoryManager to better organize history control....
r3079 #
# Distributed under the terms of the BSD License.
#
# The full license is in the file COPYING.txt, distributed with this software.
#-----------------------------------------------------------------------------
#-----------------------------------------------------------------------------
# Imports
#-----------------------------------------------------------------------------
from __future__ import print_function
vivainio
crlf normalization
r851
fperez
Add -f flag to %history to direct output to file
r960 # Stdlib imports
Thomas Kluyver
Put history saving into a separate thread.
r3711 import atexit
Thomas Kluyver
Store history sessions in table with start and end time, number of commands, and name/remark.
r3405 import datetime
fperez
Add -f flag to %history to direct output to file
r960 import os
Thomas Kluyver
Tidy up history retrieval APIs, and magic commands using them (%hist, %macro, %save, %edit)
r3394 import re
MinRK
Allow IPython to run without sqlite3...
r5147 try:
import sqlite3
except ImportError:
Skylar Saveland
try to fallback to pysqlite2.dbapi2 as sqlite3...
r8934 try:
from pysqlite2 import dbapi2 as sqlite3
except ImportError:
sqlite3 = None
Thomas Kluyver
Put history saving into a separate thread.
r3711 import threading
fperez
Add -f flag to %history to direct output to file
r960
Fernando Perez
Created HistoryManager to better organize history control....
r3079 # Our own packages
Thomas Kluyver
Make HistoryManager configurable.
r3393 from IPython.config.configurable import Configurable
MinRK
Allow IPython to run without sqlite3...
r5147 from IPython.external.decorator import decorator
Thomas Kluyver
Improve history API docs
r16033 from IPython.utils.decorators import undoc
Thomas Kluyver
HistoryAccessor can automatically find a history file for a standard profile.
r4988 from IPython.utils.path import locate_profile
Thomas Kluyver
Python 3 compatibility for os.getcwdu()
r13447 from IPython.utils import py3compat
MinRK
allow disabling SQLite history...
r8165 from IPython.utils.traitlets import (
Any, Bool, Dict, Instance, Integer, List, Unicode, TraitError,
)
Brian Granger
Work to address the review comments on Fernando's branch....
r2498 from IPython.utils.warn import warn
Fernando Perez
Created HistoryManager to better organize history control....
r3079
#-----------------------------------------------------------------------------
# Classes and functions
#-----------------------------------------------------------------------------
Thomas Kluyver
Improve history API docs
r16033 @undoc
MinRK
Allow IPython to run without sqlite3...
r5147 class DummyDB(object):
"""Dummy DB that will act as a black hole for history.
Only used in the absence of sqlite"""
def execute(*args, **kwargs):
return []
def commit(self, *args, **kwargs):
pass
def __enter__(self, *args, **kwargs):
pass
def __exit__(self, *args, **kwargs):
pass
Fernando Perez
Fix history (was accessing directly shell methods)
r6911
MinRK
Allow IPython to run without sqlite3...
r5147 @decorator
MinRK
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r8165 def needs_sqlite(f, self, *a, **kw):
Thomas Kluyver
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r16033 """Decorator: return an empty list in the absence of sqlite."""
MinRK
HistoryManager.disabled -> HistoryManager.enabled
r8176 if sqlite3 is None or not self.enabled:
MinRK
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r5147 return []
else:
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r8165 return f(self, *a, **kw)
MinRK
Allow IPython to run without sqlite3...
r5147
Fernando Perez
Fix history (was accessing directly shell methods)
r6911
Thomas Kluyver
Catch sqlite DatabaseErrors in more places when reading the history database....
r8461 if sqlite3 is not None:
DatabaseError = sqlite3.DatabaseError
else:
Thomas Kluyver
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r16033 @undoc
Thomas Kluyver
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r8461 class DatabaseError(Exception):
"Dummy exception when sqlite could not be imported. Should never occur."
@decorator
def catch_corrupt_db(f, self, *a, **kw):
"""A decorator which wraps HistoryAccessor method calls to catch errors from
Thomas Kluyver
Update docstring for @catch_corrupt_db decorator
r8462 a corrupt SQLite database, move the old database out of the way, and create
a new one.
Thomas Kluyver
Catch sqlite DatabaseErrors in more places when reading the history database....
r8461 """
try:
return f(self, *a, **kw)
except DatabaseError:
if os.path.isfile(self.hist_file):
# Try to move the file out of the way
base,ext = os.path.splitext(self.hist_file)
newpath = base + '-corrupt' + ext
os.rename(self.hist_file, newpath)
self.init_db()
print("ERROR! History file wasn't a valid SQLite database.",
"It was moved to %s" % newpath, "and a new file created.")
return []
else:
# The hist_file is probably :memory: or something else.
raise
Doug Blank
Working draft of KernelHistoryManager
r18815 class HistoryAccessorBase(Configurable):
Doug Blank
Addressed issues: renamed ZMQHistoryManager (appears to do need to do more than just an Accessor) in IPython/terminal/console/zmqhistory.py; added abc methods; rewrote access methods to load the history from the kernel client; works with 'ipython console' and with 'ipython console --kernel'
r18846 """An abstract class for History Accessors """
Doug Blank
Working draft of KernelHistoryManager
r18815
def get_tail(self, n=10, raw=True, output=False, include_latest=False):
Doug Blank
Addressed issues: replaced abc with NotImplementedError; removed unneeded methods; fixed typo
r18848 raise NotImplementedError
Doug Blank
Working draft of KernelHistoryManager
r18815
def search(self, pattern="*", raw=True, search_raw=True,
output=False, n=None, unique=False):
Doug Blank
Addressed issues: replaced abc with NotImplementedError; removed unneeded methods; fixed typo
r18848 raise NotImplementedError
Doug Blank
Working draft of KernelHistoryManager
r18815
def get_range(self, session, start=1, stop=None, raw=True,output=False):
Doug Blank
Addressed issues: replaced abc with NotImplementedError; removed unneeded methods; fixed typo
r18848 raise NotImplementedError
Thomas Kluyver
Catch sqlite DatabaseErrors in more places when reading the history database....
r8461
Doug Blank
Addressed issues: renamed ZMQHistoryManager (appears to do need to do more than just an Accessor) in IPython/terminal/console/zmqhistory.py; added abc methods; rewrote access methods to load the history from the kernel client; works with 'ipython console' and with 'ipython console --kernel'
r18846 def get_range_by_str(self, rangestr, raw=True, output=False):
Doug Blank
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r18848 raise NotImplementedError
Thomas Kluyver
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r8461
Doug Blank
Working draft of KernelHistoryManager
r18815 class HistoryAccessor(HistoryAccessorBase):
Thomas Kluyver
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r4878 """Access the history database without adding to it.
This is intended for use by standalone history tools. IPython shells use
HistoryManager, below, which is a subclass of this."""
MinRK
allow setting HistoryManager.hist_file with config...
r5233
Thomas Kluyver
Make HistoryManager configurable.
r3393 # String holding the path to the history file
MinRK
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r5233 hist_file = Unicode(config=True,
help="""Path to file to use for SQLite history database.
Fernando Perez
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r6932 By default, IPython will put the history database in the IPython
profile directory. If you would rather share one history among
Fernando Perez
Minor fixes as per @Carreau's review
r6988 profiles, you can set this value in each, so that they are consistent.
MinRK
allow setting HistoryManager.hist_file with config...
r5233
Fernando Perez
Update history magics to new API.
r6932 Due to an issue with fcntl, SQLite is known to misbehave on some NFS
mounts. If you see IPython hanging, try setting this to something on a
local disk, e.g::
MinRK
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r5233
ipython --HistoryManager.hist_file=/tmp/ipython_hist.sqlite
""")
MinRK
allow disabling SQLite history...
r8165
MinRK
HistoryManager.disabled -> HistoryManager.enabled
r8176 enabled = Bool(True, config=True,
help="""enable the SQLite history
MinRK
allow disabling SQLite history...
r8165
MinRK
HistoryManager.disabled -> HistoryManager.enabled
r8176 set enabled=False to disable the SQLite history,
in which case there will be no stored history, no SQLite connection,
MinRK
allow disabling SQLite history...
r8165 and no background saving thread. This may be necessary in some
threaded environments where IPython is embedded.
"""
)
connection_options = Dict(config=True,
help="""Options for configuring the SQLite connection
These options are passed as keyword args to sqlite3.connect
when establishing database conenctions.
"""
)
MinRK
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r5233
Thomas Kluyver
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r3388 # The SQLite database
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r8165 db = Any()
def _db_changed(self, name, old, new):
"""validate the db, since it can be an Instance of two different types"""
Benjie Chen
bug fix: sqlite3 is None when package is not installed
r8217 connection_types = (DummyDB,)
if sqlite3 is not None:
connection_types = (DummyDB, sqlite3.Connection)
if not isinstance(new, connection_types):
MinRK
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r8165 msg = "%s.db must be sqlite3 Connection or DummyDB, not %r" % \
(self.__class__.__name__, new)
raise TraitError(msg)
Thomas Kluyver
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r4875
MinRK
use `parent=self` throughout IPython...
r11064 def __init__(self, profile='default', hist_file=u'', **traits):
Thomas Kluyver
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r4875 """Create a new history accessor.
Thomas Kluyver
HistoryAccessor can automatically find a history file for a standard profile.
r4988 Parameters
----------
profile : str
The name of the profile from which to open history.
hist_file : str
Path to an SQLite history database stored by IPython. If specified,
hist_file overrides profile.
Thomas Kluyver
Improve history API docs
r16033 config : :class:`~IPython.config.loader.Config`
Thomas Kluyver
HistoryAccessor can automatically find a history file for a standard profile.
r4988 Config object. hist_file can also be set through this.
Fernando Perez
Created HistoryManager to better organize history control....
r3079 """
Fernando Perez
Finish removing spurious calls to logger and runlines....
r3087 # We need a pointer back to the shell for various tasks.
MinRK
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r11064 super(HistoryAccessor, self).__init__(**traits)
MinRK
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r5233 # defer setting hist_file from kwarg until after init,
# otherwise the default kwarg value would clobber any value
# set by config
if hist_file:
self.hist_file = hist_file
Robert Kern
BUG: use a :memory: history DB for testing. Refactor the initialization of the HistoryManager to support this.
r3465 if self.hist_file == u'':
# No one has set the hist_file, yet.
Thomas Kluyver
HistoryAccessor can automatically find a history file for a standard profile.
r4988 self.hist_file = self._get_hist_file_name(profile)
Fernando Perez
Created HistoryManager to better organize history control....
r3079
MinRK
HistoryManager.disabled -> HistoryManager.enabled
r8176 if sqlite3 is None and self.enabled:
Thomas Kluyver
Fix IPython.utils.warn API so messages are automatically displayed followed by a newline.
r8223 warn("IPython History requires SQLite, your history will not be saved")
MinRK
HistoryManager.disabled -> HistoryManager.enabled
r8176 self.enabled = False
MinRK
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r8165
Thomas Kluyver
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r8461 self.init_db()
Thomas Kluyver
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r4875
Thomas Kluyver
HistoryAccessor can automatically find a history file for a standard profile.
r4988 def _get_hist_file_name(self, profile='default'):
"""Find the history file for the given profile name.
This is overridden by the HistoryManager subclass, to use the shell's
active profile.
Parameters
----------
profile : str
The name of a profile which has a history file.
"""
return os.path.join(locate_profile(profile), 'history.sqlite')
Thomas Kluyver
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r4875
Thomas Kluyver
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r8461 @catch_corrupt_db
Thomas Kluyver
Initial conversion of history to SQLite database.
r3388 def init_db(self):
Thomas Kluyver
Store history sessions in table with start and end time, number of commands, and name/remark.
r3405 """Connect to the database, and create tables if necessary."""
MinRK
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r8176 if not self.enabled:
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r8165 self.db = DummyDB()
return
MinRK
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r4487 # use detect_types so that timestamps return datetime objects
MinRK
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r8165 kwargs = dict(detect_types=sqlite3.PARSE_DECLTYPES|sqlite3.PARSE_COLNAMES)
kwargs.update(self.connection_options)
self.db = sqlite3.connect(self.hist_file, **kwargs)
Thomas Kluyver
Store history sessions in table with start and end time, number of commands, and name/remark.
r3405 self.db.execute("""CREATE TABLE IF NOT EXISTS sessions (session integer
primary key autoincrement, start timestamp,
end timestamp, num_cmds integer, remark text)""")
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remove all trailling spaces
r4872 self.db.execute("""CREATE TABLE IF NOT EXISTS history
Thomas Kluyver
Implement optional logging of output as suggested by Robert Kern.
r3391 (session integer, line integer, source text, source_raw text,
PRIMARY KEY (session, line))""")
# Output history is optional, but ensure the table's there so it can be
# enabled later.
self.db.execute("""CREATE TABLE IF NOT EXISTS output_history
(session integer, line integer, output text,
Thomas Kluyver
Initial conversion of history to SQLite database.
r3388 PRIMARY KEY (session, line))""")
self.db.commit()
Bernardo B. Marques
remove all trailling spaces
r4872
Thomas Kluyver
Allow history database access without a shell.
r4876 def writeout_cache(self):
"""Overridden by HistoryManager to dump the cache before certain
database lookups."""
pass
Thomas Kluyver
Store history sessions in table with start and end time, number of commands, and name/remark.
r3405 ## -------------------------------
## Methods for retrieving history:
## -------------------------------
Thomas Kluyver
Rename history retrieval methods, and improve docstrings.
r3435 def _run_sql(self, sql, params, raw=True, output=False):
Thomas Kluyver
Simplify history retrieval code by moving query building and running into a common helper function.
r3401 """Prepares and runs an SQL query for the history database.
Bernardo B. Marques
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r4872
Thomas Kluyver
Simplify history retrieval code by moving query building and running into a common helper function.
r3401 Parameters
----------
sql : str
Any filtering expressions to go after SELECT ... FROM ...
params : tuple
Parameters passed to the SQL query (to replace "?")
Thomas Kluyver
Rename history retrieval methods, and improve docstrings.
r3435 raw, output : bool
See :meth:`get_range`
Bernardo B. Marques
remove all trailling spaces
r4872
Thomas Kluyver
Simplify history retrieval code by moving query building and running into a common helper function.
r3401 Returns
-------
Thomas Kluyver
Rename history retrieval methods, and improve docstrings.
r3435 Tuples as :meth:`get_range`
Thomas Kluyver
Simplify history retrieval code by moving query building and running into a common helper function.
r3401 """
Thomas Kluyver
Initial conversion of history to SQLite database.
r3388 toget = 'source_raw' if raw else 'source'
Thomas Kluyver
ipython-qtconsole now calls the right function.
r3397 sqlfrom = "history"
if output:
sqlfrom = "history LEFT JOIN output_history USING (session, line)"
toget = "history.%s, output_history.output" % toget
Thomas Kluyver
Simplify history retrieval code by moving query building and running into a common helper function.
r3401 cur = self.db.execute("SELECT session, line, %s FROM %s " %\
(toget, sqlfrom) + sql, params)
Thomas Kluyver
Allow history to store multiple outputs for a single input line.
r3415 if output: # Regroup into 3-tuples, and parse JSON
Thomas Kluyver
History expects single output per cell, and doesn't use JSON to store them in the database.
r3741 return ((ses, lin, (inp, out)) for ses, lin, inp, out in cur)
Thomas Kluyver
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r3401 return cur
Bernardo B. Marques
remove all trailling spaces
r4872
MinRK
Allow IPython to run without sqlite3...
r5147 @needs_sqlite
Thomas Kluyver
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r8461 @catch_corrupt_db
Thomas Kluyver
Improve history API docs
r16033 def get_session_info(self, session):
"""Get info about a session.
Bernardo B. Marques
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r4872
MinRK
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r4487 Parameters
----------
Bernardo B. Marques
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r4872
MinRK
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r4487 session : int
Thomas Kluyver
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r15979 Session number to retrieve.
Bernardo B. Marques
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r4872
MinRK
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r4487 Returns
-------
Thomas Kluyver
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r15979
session_id : int
Session ID number
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r16033 start : datetime
Thomas Kluyver
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r15979 Timestamp for the start of the session.
Thomas Kluyver
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r16033 end : datetime
Thomas Kluyver
Separate get_session_info between HistoryAccessor and HistoryManager...
r15979 Timestamp for the end of the session, or None if IPython crashed.
Thomas Kluyver
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r16033 num_cmds : int
Thomas Kluyver
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r15979 Number of commands run, or None if IPython crashed.
Thomas Kluyver
Improve history API docs
r16033 remark : unicode
Thomas Kluyver
Separate get_session_info between HistoryAccessor and HistoryManager...
r15979 A manually set description.
MinRK
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r4487 """
query = "SELECT * from sessions where session == ?"
return self.db.execute(query, (session,)).fetchone()
Bernardo B. Marques
remove all trailling spaces
r4872
Thomas Kluyver
Move error catching for corrupt database - error wasn't actually raised in _run_sql()
r8463 @catch_corrupt_db
Thomas Kluyver
Separate get_session_info between HistoryAccessor and HistoryManager...
r15979 def get_last_session_id(self):
"""Get the last session ID currently in the database.
Within IPython, this should be the same as the value stored in
:attr:`HistoryManager.session_number`.
"""
for record in self.get_tail(n=1, include_latest=True):
return record[0]
@catch_corrupt_db
Thomas Kluyver
Rename history retrieval methods, and improve docstrings.
r3435 def get_tail(self, n=10, raw=True, output=False, include_latest=False):
Thomas Kluyver
Further refinements to history interfaces.
r3420 """Get the last n lines from the history database.
Bernardo B. Marques
remove all trailling spaces
r4872
Thomas Kluyver
Rename history retrieval methods, and improve docstrings.
r3435 Parameters
----------
n : int
The number of lines to get
raw, output : bool
See :meth:`get_range`
include_latest : bool
If False (default), n+1 lines are fetched, and the latest one
is discarded. This is intended to be used where the function
is called by a user command, which it should not return.
Bernardo B. Marques
remove all trailling spaces
r4872
Thomas Kluyver
Rename history retrieval methods, and improve docstrings.
r3435 Returns
-------
Tuples as :meth:`get_range`
"""
Thomas Kluyver
Flush cache before querying database.
r3403 self.writeout_cache()
Thomas Kluyver
Further refinements to history interfaces.
r3420 if not include_latest:
n += 1
Thomas Kluyver
Rename history retrieval methods, and improve docstrings.
r3435 cur = self._run_sql("ORDER BY session DESC, line DESC LIMIT ?",
Thomas Kluyver
Simplify history retrieval code by moving query building and running into a common helper function.
r3401 (n,), raw=raw, output=output)
Thomas Kluyver
Further refinements to history interfaces.
r3420 if not include_latest:
return reversed(list(cur)[1:])
Thomas Kluyver
Simplify history retrieval code by moving query building and running into a common helper function.
r3401 return reversed(list(cur))
Bernardo B. Marques
remove all trailling spaces
r4872
Thomas Kluyver
Move error catching for corrupt database - error wasn't actually raised in _run_sql()
r8463 @catch_corrupt_db
Thomas Kluyver
Rename history retrieval methods, and improve docstrings.
r3435 def search(self, pattern="*", raw=True, search_raw=True,
Takafumi Arakaki
Add unique boolean argument to history search
r8780 output=False, n=None, unique=False):
Thomas Kluyver
Further refinements to history interfaces.
r3420 """Search the database using unix glob-style matching (wildcards
* and ?).
Bernardo B. Marques
remove all trailling spaces
r4872
Thomas Kluyver
Rename history retrieval methods, and improve docstrings.
r3435 Parameters
----------
pattern : str
The wildcarded pattern to match when searching
search_raw : bool
If True, search the raw input, otherwise, the parsed input
raw, output : bool
See :meth:`get_range`
Takafumi Arakaki
Add a new option `n` to limit history search hits
r8399 n : None or int
If an integer is given, it defines the limit of
returned entries.
Takafumi Arakaki
Add unique boolean argument to history search
r8780 unique : bool
When it is true, return only unique entries.
Bernardo B. Marques
remove all trailling spaces
r4872
Thomas Kluyver
Initial conversion of history to SQLite database.
r3388 Returns
-------
Thomas Kluyver
Rename history retrieval methods, and improve docstrings.
r3435 Tuples as :meth:`get_range`
Thomas Kluyver
Initial conversion of history to SQLite database.
r3388 """
Thomas Kluyver
Separating %rep and %rerun magic commands. Trouble with tests.
r3418 tosearch = "source_raw" if search_raw else "source"
Thomas Kluyver
Simplify magic_history display code, allow get_hist_search to include output in return values, and add some unit tests.
r3400 if output:
tosearch = "history." + tosearch
Thomas Kluyver
Flush cache before querying database.
r3403 self.writeout_cache()
Takafumi Arakaki
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r8399 sqlform = "WHERE %s GLOB ?" % tosearch
params = (pattern,)
Takafumi Arakaki
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r8780 if unique:
sqlform += ' GROUP BY {0}'.format(tosearch)
Takafumi Arakaki
Add a new option `n` to limit history search hits
r8399 if n is not None:
sqlform += " ORDER BY session DESC, line DESC LIMIT ?"
params += (n,)
Takafumi Arakaki
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r8780 elif unique:
sqlform += " ORDER BY session, line"
Takafumi Arakaki
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r8399 cur = self._run_sql(sqlform, params, raw=raw, output=output)
if n is not None:
Takafumi Arakaki
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r8403 return reversed(list(cur))
Takafumi Arakaki
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r8399 return cur
Thomas Kluyver
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r8463
@catch_corrupt_db
Thomas Kluyver
Allow history database access without a shell.
r4876 def get_range(self, session, start=1, stop=None, raw=True,output=False):
Thomas Kluyver
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r3394 """Retrieve input by session.
Bernardo B. Marques
remove all trailling spaces
r4872
Thomas Kluyver
Tidy up history retrieval APIs, and magic commands using them (%hist, %macro, %save, %edit)
r3394 Parameters
----------
session : int
Thomas Kluyver
Allow history database access without a shell.
r4876 Session number to retrieve.
Thomas Kluyver
Tidy up history retrieval APIs, and magic commands using them (%hist, %macro, %save, %edit)
r3394 start : int
First line to retrieve.
stop : int
Thomas Kluyver
Passing IPython.core tests.
r3396 End of line range (excluded from output itself). If None, retrieve
to the end of the session.
Thomas Kluyver
Tidy up history retrieval APIs, and magic commands using them (%hist, %macro, %save, %edit)
r3394 raw : bool
If True, return untranslated input
output : bool
If True, attempt to include output. This will be 'real' Python
objects for the current session, or text reprs from previous
sessions if db_log_output was enabled at the time. Where no output
is found, None is used.
Bernardo B. Marques
remove all trailling spaces
r4872
Thomas Kluyver
Tidy up history retrieval APIs, and magic commands using them (%hist, %macro, %save, %edit)
r3394 Returns
-------
Thomas Kluyver
Improve history API docs
r16033 entries
An iterator over the desired lines. Each line is a 3-tuple, either
(session, line, input) if output is False, or
(session, line, (input, output)) if output is True.
Thomas Kluyver
Tidy up history retrieval APIs, and magic commands using them (%hist, %macro, %save, %edit)
r3394 """
if stop:
Thomas Kluyver
Fix up extracting ranges from previous sessions, now using ~2/8 syntax instead of ~2#8
r3395 lineclause = "line >= ? AND line < ?"
Thomas Kluyver
Tidy up history retrieval APIs, and magic commands using them (%hist, %macro, %save, %edit)
r3394 params = (session, start, stop)
else:
lineclause = "line>=?"
params = (session, start)
Bernardo B. Marques
remove all trailling spaces
r4872
Takafumi Arakaki
Remove suspicious double quote
r8397 return self._run_sql("WHERE session==? AND %s" % lineclause,
Thomas Kluyver
Simplify history retrieval code by moving query building and running into a common helper function.
r3401 params, raw=raw, output=output)
Bernardo B. Marques
remove all trailling spaces
r4872
Thomas Kluyver
Rename history retrieval methods, and improve docstrings.
r3435 def get_range_by_str(self, rangestr, raw=True, output=False):
Thomas Kluyver
Tidy up history retrieval APIs, and magic commands using them (%hist, %macro, %save, %edit)
r3394 """Get lines of history from a string of ranges, as used by magic
Thomas Kluyver
Rename history retrieval methods, and improve docstrings.
r3435 commands %hist, %save, %macro, etc.
Bernardo B. Marques
remove all trailling spaces
r4872
Thomas Kluyver
Rename history retrieval methods, and improve docstrings.
r3435 Parameters
----------
rangestr : str
A string specifying ranges, e.g. "5 ~2/1-4". See
:func:`magic_history` for full details.
raw, output : bool
As :meth:`get_range`
Bernardo B. Marques
remove all trailling spaces
r4872
Thomas Kluyver
Rename history retrieval methods, and improve docstrings.
r3435 Returns
-------
Tuples as :meth:`get_range`
"""
Thomas Kluyver
Fix up extracting ranges from previous sessions, now using ~2/8 syntax instead of ~2#8
r3395 for sess, s, e in extract_hist_ranges(rangestr):
Thomas Kluyver
Rename history retrieval methods, and improve docstrings.
r3435 for line in self.get_range(sess, s, e, raw=raw, output=output):
Thomas Kluyver
Tidy up history retrieval APIs, and magic commands using them (%hist, %macro, %save, %edit)
r3394 yield line
Bernardo B. Marques
remove all trailling spaces
r4872
Thomas Kluyver
Start separating out methods for accessing history.
r4875
class HistoryManager(HistoryAccessor):
"""A class to organize all history-related functionality in one place.
"""
# Public interface
# An instance of the IPython shell we are attached to
shell = Instance('IPython.core.interactiveshell.InteractiveShellABC')
# Lists to hold processed and raw history. These start with a blank entry
# so that we can index them starting from 1
input_hist_parsed = List([""])
input_hist_raw = List([""])
# A list of directories visited during session
dir_hist = List()
def _dir_hist_default(self):
try:
Thomas Kluyver
Python 3 compatibility for os.getcwdu()
r13447 return [py3compat.getcwd()]
Thomas Kluyver
Start separating out methods for accessing history.
r4875 except OSError:
return []
# A dict of output history, keyed with ints from the shell's
# execution count.
output_hist = Dict()
# The text/plain repr of outputs.
output_hist_reprs = Dict()
# The number of the current session in the history database
MinRK
add Integer traitlet...
r5344 session_number = Integer()
MinRK
add missing help strings to HistoryManager configurables...
r13804
db_log_output = Bool(False, config=True,
help="Should the history database include output? (default: no)"
)
db_cache_size = Integer(0, config=True,
help="Write to database every x commands (higher values save disk access & power).\n"
"Values of 1 or less effectively disable caching."
)
Thomas Kluyver
Start separating out methods for accessing history.
r4875 # The input and output caches
db_input_cache = List()
db_output_cache = List()
# History saving in separate thread
save_thread = Instance('IPython.core.history.HistorySavingThread')
try: # Event is a function returning an instance of _Event...
save_flag = Instance(threading._Event)
except AttributeError: # ...until Python 3.3, when it's a class.
save_flag = Instance(threading.Event)
# Private interface
# Variables used to store the three last inputs from the user. On each new
# history update, we populate the user's namespace with these, shifted as
# necessary.
_i00 = Unicode(u'')
_i = Unicode(u'')
_ii = Unicode(u'')
_iii = Unicode(u'')
# A regex matching all forms of the exit command, so that we don't store
# them in the history (it's annoying to rewind the first entry and land on
# an exit call).
_exit_re = re.compile(r"(exit|quit)(\s*\(.*\))?$")
def __init__(self, shell=None, config=None, **traits):
"""Create a new history manager associated with a shell instance.
"""
# We need a pointer back to the shell for various tasks.
super(HistoryManager, self).__init__(shell=shell, config=config,
**traits)
self.save_flag = threading.Event()
self.db_input_cache_lock = threading.Lock()
self.db_output_cache_lock = threading.Lock()
MinRK
HistoryManager.disabled -> HistoryManager.enabled
r8176 if self.enabled and self.hist_file != ':memory:':
MinRK
disable save-thread when using in-memory history db.
r6871 self.save_thread = HistorySavingThread(self)
self.save_thread.start()
Thomas Kluyver
Start separating out methods for accessing history.
r4875
self.new_session()
MinRK
Allow IPython to run without sqlite3...
r5147
Thomas Kluyver
HistoryAccessor can automatically find a history file for a standard profile.
r4988 def _get_hist_file_name(self, profile=None):
"""Get default history file name based on the Shell's profile.
The profile parameter is ignored, but must exist for compatibility with
the parent class."""
Thomas Kluyver
Start separating out methods for accessing history.
r4875 profile_dir = self.shell.profile_dir.location
return os.path.join(profile_dir, 'history.sqlite')
MinRK
Allow IPython to run without sqlite3...
r5147 @needs_sqlite
Thomas Kluyver
Start separating out methods for accessing history.
r4875 def new_session(self, conn=None):
"""Get a new session number."""
if conn is None:
conn = self.db
with conn:
cur = conn.execute("""INSERT INTO sessions VALUES (NULL, ?, NULL,
NULL, "") """, (datetime.datetime.now(),))
self.session_number = cur.lastrowid
def end_session(self):
"""Close the database session, filling in the end time and line count."""
self.writeout_cache()
with self.db:
self.db.execute("""UPDATE sessions SET end=?, num_cmds=? WHERE
session==?""", (datetime.datetime.now(),
len(self.input_hist_parsed)-1, self.session_number))
self.session_number = 0
def name_session(self, name):
"""Give the current session a name in the history database."""
with self.db:
self.db.execute("UPDATE sessions SET remark=? WHERE session==?",
(name, self.session_number))
def reset(self, new_session=True):
"""Clear the session history, releasing all object references, and
optionally open a new session."""
self.output_hist.clear()
# The directory history can't be completely empty
Thomas Kluyver
Python 3 compatibility for os.getcwdu()
r13447 self.dir_hist[:] = [py3compat.getcwd()]
Thomas Kluyver
Start separating out methods for accessing history.
r4875
if new_session:
if self.session_number:
self.end_session()
self.input_hist_parsed[:] = [""]
self.input_hist_raw[:] = [""]
self.new_session()
Doug Blank
Working draft of KernelHistoryManager
r18815
Thomas Kluyver
Start separating out methods for accessing history.
r4875 # ------------------------------
# Methods for retrieving history
# ------------------------------
Thomas Kluyver
Separate get_session_info between HistoryAccessor and HistoryManager...
r15979 def get_session_info(self, session=0):
Thomas Kluyver
Improve history API docs
r16033 """Get info about a session.
Thomas Kluyver
Separate get_session_info between HistoryAccessor and HistoryManager...
r15979
Parameters
----------
session : int
Session number to retrieve. The current session is 0, and negative
Thomas Kluyver
Improve history API docs
r16033 numbers count back from current session, so -1 is the previous session.
Thomas Kluyver
Separate get_session_info between HistoryAccessor and HistoryManager...
r15979
Returns
-------
session_id : int
Session ID number
Thomas Kluyver
Improve history API docs
r16033 start : datetime
Thomas Kluyver
Separate get_session_info between HistoryAccessor and HistoryManager...
r15979 Timestamp for the start of the session.
Thomas Kluyver
Improve history API docs
r16033 end : datetime
Thomas Kluyver
Separate get_session_info between HistoryAccessor and HistoryManager...
r15979 Timestamp for the end of the session, or None if IPython crashed.
Thomas Kluyver
Improve history API docs
r16033 num_cmds : int
Thomas Kluyver
Separate get_session_info between HistoryAccessor and HistoryManager...
r15979 Number of commands run, or None if IPython crashed.
Thomas Kluyver
Improve history API docs
r16033 remark : unicode
Thomas Kluyver
Separate get_session_info between HistoryAccessor and HistoryManager...
r15979 A manually set description.
"""
if session <= 0:
session += self.session_number
return super(HistoryManager, self).get_session_info(session=session)
Thomas Kluyver
Start separating out methods for accessing history.
r4875 def _get_range_session(self, start=1, stop=None, raw=True, output=False):
"""Get input and output history from the current session. Called by
get_range, and takes similar parameters."""
input_hist = self.input_hist_raw if raw else self.input_hist_parsed
n = len(input_hist)
if start < 0:
start += n
if not stop or (stop > n):
stop = n
elif stop < 0:
stop += n
for i in range(start, stop):
if output:
line = (input_hist[i], self.output_hist_reprs.get(i))
else:
line = input_hist[i]
yield (0, i, line)
Thomas Kluyver
Allow history database access without a shell.
r4876
Thomas Kluyver
Set default session parameter for HistoryManager.get_range()
r4877 def get_range(self, session=0, start=1, stop=None, raw=True,output=False):
Thomas Kluyver
Allow history database access without a shell.
r4876 """Retrieve input by session.
Parameters
----------
session : int
Session number to retrieve. The current session is 0, and negative
numbers count back from current session, so -1 is previous session.
start : int
First line to retrieve.
stop : int
End of line range (excluded from output itself). If None, retrieve
to the end of the session.
raw : bool
If True, return untranslated input
output : bool
If True, attempt to include output. This will be 'real' Python
objects for the current session, or text reprs from previous
sessions if db_log_output was enabled at the time. Where no output
is found, None is used.
Returns
-------
Thomas Kluyver
Improve history API docs
r16033 entries
An iterator over the desired lines. Each line is a 3-tuple, either
(session, line, input) if output is False, or
(session, line, (input, output)) if output is True.
Thomas Kluyver
Allow history database access without a shell.
r4876 """
if session <= 0:
session += self.session_number
if session==self.session_number: # Current session
return self._get_range_session(start, stop, raw, output)
Fernando Perez
Update history magics to new API.
r6932 return super(HistoryManager, self).get_range(session, start, stop, raw,
output)
Thomas Kluyver
Start separating out methods for accessing history.
r4875
Thomas Kluyver
Store history sessions in table with start and end time, number of commands, and name/remark.
r3405 ## ----------------------------
## Methods for storing history:
## ----------------------------
Thomas Kluyver
Tidy up store_inputs
r3390 def store_inputs(self, line_num, source, source_raw=None):
Fernando Perez
Finish removing spurious calls to logger and runlines....
r3087 """Store source and raw input in history and create input cache
Thomas Kluyver
Improve history API docs
r16033 variables ``_i*``.
Bernardo B. Marques
remove all trailling spaces
r4872
Fernando Perez
Add support for accessing raw data to inputsplitter....
r3080 Parameters
----------
Thomas Kluyver
Tidy up store_inputs
r3390 line_num : int
The prompt number of this input.
Bernardo B. Marques
remove all trailling spaces
r4872
Fernando Perez
Add support for accessing raw data to inputsplitter....
r3080 source : str
Python input.
source_raw : str, optional
If given, this is the raw input without any IPython transformations
applied to it. If not given, ``source`` is used.
"""
if source_raw is None:
source_raw = source
Thomas Kluyver
Tweak to history_manager.store_inputs to pass tests.
r3419 source = source.rstrip('\n')
source_raw = source_raw.rstrip('\n')
Bernardo B. Marques
remove all trailling spaces
r4872
Fernando Perez
Small fix and cleanup for exit/quit command filtering.
r3246 # do not store exit/quit commands
Thomas Kluyver
Replace exit command set with regex.
r3750 if self._exit_re.match(source_raw.strip()):
Satrajit Ghosh
removed quit/exit commands from history
r3243 return
Bernardo B. Marques
remove all trailling spaces
r4872
Thomas Kluyver
Separating %rep and %rerun magic commands. Trouble with tests.
r3418 self.input_hist_parsed.append(source)
self.input_hist_raw.append(source_raw)
Bernardo B. Marques
remove all trailling spaces
r4872
Thomas Kluyver
Add locks for input and output caches.
r3713 with self.db_input_cache_lock:
self.db_input_cache.append((line_num, source, source_raw))
# Trigger to flush cache and write to DB.
if len(self.db_input_cache) >= self.db_cache_size:
self.save_flag.set()
Fernando Perez
Add support for accessing raw data to inputsplitter....
r3080
Fernando Perez
Finish removing spurious calls to logger and runlines....
r3087 # update the auto _i variables
self._iii = self._ii
self._ii = self._i
self._i = self._i00
self._i00 = source_raw
# hackish access to user namespace to create _i1,_i2... dynamically
Thomas Kluyver
Tidy up store_inputs
r3390 new_i = '_i%s' % line_num
Fernando Perez
Finish removing spurious calls to logger and runlines....
r3087 to_main = {'_i': self._i,
'_ii': self._ii,
'_iii': self._iii,
new_i : self._i00 }
MinRK
Don't require HistoryManager to have a shell...
r11359
if self.shell is not None:
self.shell.push(to_main, interactive=False)
Bernardo B. Marques
remove all trailling spaces
r4872
Thomas Kluyver
Allow history to store multiple outputs for a single input line.
r3415 def store_output(self, line_num):
Thomas Kluyver
Separate 'Out' in user_ns from the output history logging.
r3417 """If database output logging is enabled, this saves all the
outputs from the indicated prompt number to the database. It's
Thomas Kluyver
Rename history retrieval methods, and improve docstrings.
r3435 called by run_cell after code has been executed.
Bernardo B. Marques
remove all trailling spaces
r4872
Thomas Kluyver
Rename history retrieval methods, and improve docstrings.
r3435 Parameters
----------
line_num : int
The line number from which to save outputs
"""
Thomas Kluyver
History expects single output per cell, and doesn't use JSON to store them in the database.
r3741 if (not self.db_log_output) or (line_num not in self.output_hist_reprs):
Thomas Kluyver
Implement optional logging of output as suggested by Robert Kern.
r3391 return
Thomas Kluyver
History expects single output per cell, and doesn't use JSON to store them in the database.
r3741 output = self.output_hist_reprs[line_num]
Bernardo B. Marques
remove all trailling spaces
r4872
Thomas Kluyver
Add locks for input and output caches.
r3713 with self.db_output_cache_lock:
self.db_output_cache.append((line_num, output))
Thomas Kluyver
Add error handling so SQLite history can recover from corrupt databases and session/line number collisions.
r3437 if self.db_cache_size <= 1:
Thomas Kluyver
Put history saving into a separate thread.
r3711 self.save_flag.set()
Bernardo B. Marques
remove all trailling spaces
r4872
Thomas Kluyver
Put history saving into a separate thread.
r3711 def _writeout_input_cache(self, conn):
with conn:
Thomas Kluyver
Move with statement so history db cache is written out in one transaction (two if output history is being logged).
r3700 for line in self.db_input_cache:
Thomas Kluyver
Put history saving into a separate thread.
r3711 conn.execute("INSERT INTO history VALUES (?, ?, ?, ?)",
Thomas Kluyver
Add error handling so SQLite history can recover from corrupt databases and session/line number collisions.
r3437 (self.session_number,)+line)
Bernardo B. Marques
remove all trailling spaces
r4872
Thomas Kluyver
Put history saving into a separate thread.
r3711 def _writeout_output_cache(self, conn):
with conn:
Thomas Kluyver
Move with statement so history db cache is written out in one transaction (two if output history is being logged).
r3700 for line in self.db_output_cache:
Thomas Kluyver
Put history saving into a separate thread.
r3711 conn.execute("INSERT INTO output_history VALUES (?, ?, ?)",
Thomas Kluyver
Add error handling so SQLite history can recover from corrupt databases and session/line number collisions.
r3437 (self.session_number,)+line)
Bernardo B. Marques
remove all trailling spaces
r4872
MinRK
Allow IPython to run without sqlite3...
r5147 @needs_sqlite
Thomas Kluyver
Put history saving into a separate thread.
r3711 def writeout_cache(self, conn=None):
Thomas Kluyver
Add error handling so SQLite history can recover from corrupt databases and session/line number collisions.
r3437 """Write any entries in the cache to the database."""
Thomas Kluyver
Put history saving into a separate thread.
r3711 if conn is None:
conn = self.db
Bernardo B. Marques
remove all trailling spaces
r4872
Thomas Kluyver
Add locks for input and output caches.
r3713 with self.db_input_cache_lock:
try:
Thomas Kluyver
Put history saving into a separate thread.
r3711 self._writeout_input_cache(conn)
Thomas Kluyver
Add error handling so SQLite history can recover from corrupt databases and session/line number collisions.
r3437 except sqlite3.IntegrityError:
Thomas Kluyver
new_session can be called from either thread.
r3714 self.new_session(conn)
Thomas Kluyver
Add locks for input and output caches.
r3713 print("ERROR! Session/line number was not unique in",
"database. History logging moved to new session",
self.session_number)
Fernando Perez
Update history magics to new API.
r6932 try:
# Try writing to the new session. If this fails, don't
# recurse
Thomas Kluyver
Add locks for input and output caches.
r3713 self._writeout_input_cache(conn)
except sqlite3.IntegrityError:
pass
finally:
self.db_input_cache = []
with self.db_output_cache_lock:
try:
self._writeout_output_cache(conn)
except sqlite3.IntegrityError:
print("!! Session/line number for output was not unique",
"in database. Output will not be stored.")
finally:
self.db_output_cache = []
Fernando Perez
Finish removing spurious calls to logger and runlines....
r3087
Thomas Kluyver
Put history saving into a separate thread.
r3711
class HistorySavingThread(threading.Thread):
Thomas Kluyver
Add docstrings, improve history thread stop method.
r3716 """This thread takes care of writing history to the database, so that
the UI isn't held up while that happens.
Bernardo B. Marques
remove all trailling spaces
r4872
Thomas Kluyver
Add docstrings, improve history thread stop method.
r3716 It waits for the HistoryManager's save_flag to be set, then writes out
the history cache. The main thread is responsible for setting the flag when
the cache size reaches a defined threshold."""
Thomas Kluyver
Put history saving into a separate thread.
r3711 daemon = True
stop_now = False
MinRK
HistoryManager.disabled -> HistoryManager.enabled
r8176 enabled = True
Thomas Kluyver
Put history saving into a separate thread.
r3711 def __init__(self, history_manager):
Jonah Graham
Provide a name of the HistorySavingThread...
r13126 super(HistorySavingThread, self).__init__(name="IPythonHistorySavingThread")
Thomas Kluyver
Put history saving into a separate thread.
r3711 self.history_manager = history_manager
MinRK
HistoryManager.disabled -> HistoryManager.enabled
r8176 self.enabled = history_manager.enabled
Thomas Kluyver
Put history saving into a separate thread.
r3711 atexit.register(self.stop)
Bernardo B. Marques
remove all trailling spaces
r4872
MinRK
Allow IPython to run without sqlite3...
r5147 @needs_sqlite
Thomas Kluyver
Put history saving into a separate thread.
r3711 def run(self):
# We need a separate db connection per thread:
Thomas Kluyver
Catch errors in history save thread, and print a briefer error message, rather than an ugly traceback.
r3720 try:
MinRK
allow disabling SQLite history...
r8165 self.db = sqlite3.connect(self.history_manager.hist_file,
**self.history_manager.connection_options
)
Thomas Kluyver
Catch errors in history save thread, and print a briefer error message, rather than an ugly traceback.
r3720 while True:
self.history_manager.save_flag.wait()
if self.stop_now:
Thomas Kluyver
Close database when HistorySavingThread stops
r16775 self.db.close()
Thomas Kluyver
Catch errors in history save thread, and print a briefer error message, rather than an ugly traceback.
r3720 return
self.history_manager.save_flag.clear()
self.history_manager.writeout_cache(self.db)
except Exception as e:
print(("The history saving thread hit an unexpected error (%s)."
"History will not be written to the database.") % repr(e))
Bernardo B. Marques
remove all trailling spaces
r4872
Thomas Kluyver
Put history saving into a separate thread.
r3711 def stop(self):
Thomas Kluyver
Add docstrings, improve history thread stop method.
r3716 """This can be called from the main thread to safely stop this thread.
Bernardo B. Marques
remove all trailling spaces
r4872
Thomas Kluyver
Add docstrings, improve history thread stop method.
r3716 Note that it does not attempt to write out remaining history before
exiting. That should be done by calling the HistoryManager's
end_session method."""
Thomas Kluyver
Put history saving into a separate thread.
r3711 self.stop_now = True
self.history_manager.save_flag.set()
Thomas Kluyver
Add docstrings, improve history thread stop method.
r3716 self.join()
Thomas Kluyver
Put history saving into a separate thread.
r3711
Bernardo B. Marques
remove all trailling spaces
r4872
Thomas Kluyver
Fix up extracting ranges from previous sessions, now using ~2/8 syntax instead of ~2#8
r3395 # To match, e.g. ~5/8-~2/3
Thomas Kluyver
Tidy up history retrieval APIs, and magic commands using them (%hist, %macro, %save, %edit)
r3394 range_re = re.compile(r"""
Thomas Kluyver
Fix up extracting ranges from previous sessions, now using ~2/8 syntax instead of ~2#8
r3395 ((?P<startsess>~?\d+)/)?
Joon Ro
shows entire session history when only startsess is given
r9786 (?P<start>\d+)?
Thomas Kluyver
Tidy up history retrieval APIs, and magic commands using them (%hist, %macro, %save, %edit)
r3394 ((?P<sep>[\-:])
Thomas Kluyver
Fix up extracting ranges from previous sessions, now using ~2/8 syntax instead of ~2#8
r3395 ((?P<endsess>~?\d+)/)?
Thomas Kluyver
Tidy up history retrieval APIs, and magic commands using them (%hist, %macro, %save, %edit)
r3394 (?P<end>\d+))?
Thomas Kluyver
Refactor code-finding logic, and use it for %save and %macro as well.
r3493 $""", re.VERBOSE)
Thomas Kluyver
Tidy up history retrieval APIs, and magic commands using them (%hist, %macro, %save, %edit)
r3394
Fernando Perez
Fix history (was accessing directly shell methods)
r6911
Thomas Kluyver
Tidy up history retrieval APIs, and magic commands using them (%hist, %macro, %save, %edit)
r3394 def extract_hist_ranges(ranges_str):
"""Turn a string of history ranges into 3-tuples of (session, start, stop).
Bernardo B. Marques
remove all trailling spaces
r4872
Thomas Kluyver
Tidy up history retrieval APIs, and magic commands using them (%hist, %macro, %save, %edit)
r3394 Examples
--------
Thomas Kluyver
Fix doctest
r16036 >>> list(extract_hist_ranges("~8/5-~7/4 2"))
[(-8, 5, None), (-7, 1, 5), (0, 2, 3)]
Thomas Kluyver
Tidy up history retrieval APIs, and magic commands using them (%hist, %macro, %save, %edit)
r3394 """
for range_str in ranges_str.split():
rmatch = range_re.match(range_str)
Thomas Kluyver
Initial fix for magic %rep function (was broken by new history system). Needs a bit of further thought.
r3416 if not rmatch:
continue
Joon Ro
shows entire session history when only startsess is given
r9786 start = rmatch.group("start")
if start:
start = int(start)
end = rmatch.group("end")
# If no end specified, get (a, a + 1)
end = int(end) if end else start + 1
else: # start not specified
if not rmatch.group('startsess'): # no startsess
continue
start = 1
end = None # provide the entire session hist
Thomas Kluyver
Tidy up history retrieval APIs, and magic commands using them (%hist, %macro, %save, %edit)
r3394 if rmatch.group("sep") == "-": # 1-3 == 1:4 --> [1, 2, 3]
end += 1
startsess = rmatch.group("startsess") or "0"
endsess = rmatch.group("endsess") or startsess
startsess = int(startsess.replace("~","-"))
endsess = int(endsess.replace("~","-"))
Joon Ro
joined two message lines to one
r9791 assert endsess >= startsess, "start session must be earlier than end session"
Thomas Kluyver
Tidy up history retrieval APIs, and magic commands using them (%hist, %macro, %save, %edit)
r3394
if endsess == startsess:
yield (startsess, start, end)
continue
# Multiple sessions in one range:
yield (startsess, start, None)
for sess in range(startsess+1, endsess):
yield (sess, 1, None)
yield (endsess, 1, end)
Fernando Perez
Fix history (was accessing directly shell methods)
r6911
Thomas Kluyver
Tidy up history retrieval APIs, and magic commands using them (%hist, %macro, %save, %edit)
r3394 def _format_lineno(session, line):
"""Helper function to format line numbers properly."""
if session == 0:
return str(line)
return "%s#%s" % (session, line)
vivainio
crlf normalization
r851
Fernando Perez
Fix history (was accessing directly shell methods)
r6911