diff --git a/IPython/core/magics/basic.py b/IPython/core/magics/basic.py
index f707bcc..11b5693 100644
--- a/IPython/core/magics/basic.py
+++ b/IPython/core/magics/basic.py
@@ -461,7 +461,7 @@ Currently the magic system has the following functions:""",
             ptformatter.pprint = False
             disp_formatter.active_types = ['text/plain']
 
-            shell.magic('xmode Plain')
+            shell.run_line_magic("xmode", "Plain")
         else:
             # turn off
             shell.separate_in = dstore.rc_separate_in
diff --git a/IPython/core/magics/logging.py b/IPython/core/magics/logging.py
index b6b8d8a..81b1675 100644
--- a/IPython/core/magics/logging.py
+++ b/IPython/core/magics/logging.py
@@ -83,14 +83,14 @@ class LoggingMagics(Magics):
             log 'raw' input.  Normally, IPython's logs contain the processed
             input, so that user lines are logged in their final form, converted
             into valid Python.  For example, %Exit is logged as
-            _ip.magic("Exit").  If the -r flag is given, all input is logged
+            _ip.run_line_magic("Exit").  If the -r flag is given, all input is logged
             exactly as typed, with no transformations applied.
 
           -t
             put timestamps before each input line logged (these are put in
             comments).
 
-          -q 
+          -q
             suppress output of logstate message when logging is invoked
         """
 
diff --git a/IPython/extensions/tests/test_storemagic.py b/IPython/extensions/tests/test_storemagic.py
index 3ac306b..66122ab 100644
--- a/IPython/extensions/tests/test_storemagic.py
+++ b/IPython/extensions/tests/test_storemagic.py
@@ -5,22 +5,27 @@ from traitlets.config.loader import Config
 
 
 def setup_module():
-    ip.magic('load_ext storemagic')
+    ip.run_line_magic("load_ext", "storemagic")
+
 
 def test_store_restore():
-    assert 'bar' not in ip.user_ns, "Error: some other test leaked `bar` in user_ns"
-    assert 'foo' not in ip.user_ns, "Error: some other test leaked `foo` in user_ns"
-    assert 'foobar' not in ip.user_ns, "Error: some other test leaked `foobar` in user_ns"
-    assert 'foobaz' not in ip.user_ns, "Error: some other test leaked `foobaz` in user_ns"
-    ip.user_ns['foo'] = 78
-    ip.magic('alias bar echo "hello"')
-    ip.user_ns['foobar'] = 79
-    ip.user_ns['foobaz'] = '80'
+    assert "bar" not in ip.user_ns, "Error: some other test leaked `bar` in user_ns"
+    assert "foo" not in ip.user_ns, "Error: some other test leaked `foo` in user_ns"
+    assert (
+        "foobar" not in ip.user_ns
+    ), "Error: some other test leaked `foobar` in user_ns"
+    assert (
+        "foobaz" not in ip.user_ns
+    ), "Error: some other test leaked `foobaz` in user_ns"
+    ip.user_ns["foo"] = 78
+    ip.run_line_magic("alias", 'bar echo "hello"')
+    ip.user_ns["foobar"] = 79
+    ip.user_ns["foobaz"] = "80"
     tmpd = tempfile.mkdtemp()
-    ip.magic('cd ' + tmpd)
-    ip.magic('store foo')
-    ip.magic('store bar')
-    ip.magic('store foobar foobaz')
+    ip.run_line_magic("cd", tmpd)
+    ip.run_line_magic("store", "foo")
+    ip.run_line_magic("store", "bar")
+    ip.run_line_magic("store", "foobar foobaz")
 
     # Check storing
     assert ip.db["autorestore/foo"] == 78
@@ -29,29 +34,29 @@ def test_store_restore():
     assert ip.db["autorestore/foobaz"] == "80"
 
     # Remove those items
-    ip.user_ns.pop('foo', None)
-    ip.user_ns.pop('foobar', None)
-    ip.user_ns.pop('foobaz', None)
-    ip.alias_manager.undefine_alias('bar')
-    ip.magic('cd -')
-    ip.user_ns['_dh'][:] = []
+    ip.user_ns.pop("foo", None)
+    ip.user_ns.pop("foobar", None)
+    ip.user_ns.pop("foobaz", None)
+    ip.alias_manager.undefine_alias("bar")
+    ip.run_line_magic("cd", "-")
+    ip.user_ns["_dh"][:] = []
 
     # Check restoring
-    ip.magic("store -r foo bar foobar foobaz")
+    ip.run_line_magic("store", "-r foo bar foobar foobaz")
     assert ip.user_ns["foo"] == 78
     assert ip.alias_manager.is_alias("bar")
     assert ip.user_ns["foobar"] == 79
     assert ip.user_ns["foobaz"] == "80"
 
-    ip.magic("store -r")  # restores _dh too
+    ip.run_line_magic("store", "-r")  # restores _dh too
     assert any(Path(tmpd).samefile(p) for p in ip.user_ns["_dh"])
 
     os.rmdir(tmpd)
 
 def test_autorestore():
-    ip.user_ns['foo'] = 95
-    ip.magic('store foo')
-    del ip.user_ns['foo']
+    ip.user_ns["foo"] = 95
+    ip.run_line_magic("store", "foo")
+    del ip.user_ns["foo"]
     c = Config()
     c.StoreMagics.autorestore = False
     orig_config = ip.config