diff --git a/examples/Customization/Index.ipynb b/examples/Customization/Index.ipynb
index a28a207..9ad7be3 100644
--- a/examples/Customization/Index.ipynb
+++ b/examples/Customization/Index.ipynb
@@ -1,7 +1,7 @@
 {
  "metadata": {
   "name": "",
-  "signature": "sha256:9081cd113ba2044ff4184aca7ea71d8b9b8aa374d44ebc893e9d00b5bbd91217"
+  "signature": "sha256:2fc11a62b83396569f64bfde2516a0219a62108a64f920dedb7217a63d67a9bc"
  },
  "nbformat": 3,
  "nbformat_minor": 0,
@@ -46,12 +46,76 @@
      ]
     },
     {
+     "cell_type": "markdown",
+     "metadata": {},
+     "source": [
+      "Coming soon."
+     ]
+    },
+    {
      "cell_type": "heading",
      "level": 2,
      "metadata": {},
      "source": [
       "Examples"
      ]
+    },
+    {
+     "cell_type": "markdown",
+     "metadata": {},
+     "source": [
+      "Coming soon."
+     ]
+    },
+    {
+     "cell_type": "heading",
+     "level": 2,
+     "metadata": {},
+     "source": [
+      "Non-notebook examples"
+     ]
+    },
+    {
+     "cell_type": "markdown",
+     "metadata": {},
+     "source": [
+      "This directory also contains examples that are regular Python (`.py`) files."
+     ]
+    },
+    {
+     "cell_type": "code",
+     "collapsed": false,
+     "input": [
+      "from IPython.display import FileLink, display"
+     ],
+     "language": "python",
+     "metadata": {},
+     "outputs": [],
+     "prompt_number": 1
+    },
+    {
+     "cell_type": "code",
+     "collapsed": false,
+     "input": [
+      "files =!ls *.py\n",
+      "for f in files:\n",
+      "    display(FileLink(f))"
+     ],
+     "language": "python",
+     "metadata": {},
+     "outputs": [
+      {
+       "html": [
+        "<a href='appconfig.py' target='_blank'>appconfig.py</a><br>"
+       ],
+       "metadata": {},
+       "output_type": "display_data",
+       "text": [
+        "/Users/bgranger/Documents/Computing/IPython/code/ipython/examples/Customization/appconfig.py"
+       ]
+      }
+     ],
+     "prompt_number": 2
     }
    ],
    "metadata": {}
diff --git a/examples/Embedding/Index.ipynb b/examples/Embedding/Index.ipynb
index ce04d5d..aa019bf 100644
--- a/examples/Embedding/Index.ipynb
+++ b/examples/Embedding/Index.ipynb
@@ -1,7 +1,7 @@
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  "metadata": {
   "name": "",
-  "signature": "sha256:ff3543408c0e2798384ca08ff9999664013d269f5fdc35290b1f318303dbd5b5"
+  "signature": "sha256:78b90d18791f32ff5abbbf5b4a9846ad8fad0a46af65125faac15f86f68da57f"
  },
  "nbformat": 3,
  "nbformat_minor": 0,
@@ -31,6 +31,20 @@
      ]
     },
     {
+     "cell_type": "markdown",
+     "metadata": {},
+     "source": [
+      "The architecture of IPython is built with reusable components. These components include:\n",
+      "\n",
+      "* The configuration system for processing command line arguments and configuration files\n",
+      "* The IPython `InteractiveShell` object that provides the core interactive features across the entire code base\n",
+      "* The IPython kernel, which provides the capabilities of the `InteractiveShell` object over a ZeroMQ/JSON based message protocol to various frontends\n",
+      "* The IPython frontends (Notebook, Qt Console, Console, Terminal)\n",
+      "\n",
+      "These components can be embedded into other applications."
+     ]
+    },
+    {
      "cell_type": "heading",
      "level": 2,
      "metadata": {},
@@ -39,12 +53,146 @@
      ]
     },
     {
+     "cell_type": "markdown",
+     "metadata": {},
+     "source": [
+      "Coming soon."
+     ]
+    },
+    {
      "cell_type": "heading",
      "level": 2,
      "metadata": {},
      "source": [
       "Examples"
      ]
+    },
+    {
+     "cell_type": "markdown",
+     "metadata": {},
+     "source": [
+      "Coming soon."
+     ]
+    },
+    {
+     "cell_type": "heading",
+     "level": 2,
+     "metadata": {},
+     "source": [
+      "Non-notebook examples"
+     ]
+    },
+    {
+     "cell_type": "markdown",
+     "metadata": {},
+     "source": [
+      "This directory also contains examples that are regular Python (`.py`) files."
+     ]
+    },
+    {
+     "cell_type": "code",
+     "collapsed": false,
+     "input": [
+      "from IPython.display import FileLink, display"
+     ],
+     "language": "python",
+     "metadata": {},
+     "outputs": [],
+     "prompt_number": 2
+    },
+    {
+     "cell_type": "code",
+     "collapsed": false,
+     "input": [
+      "files =!ls *.py\n",
+      "for f in files:\n",
+      "    display(FileLink(f))"
+     ],
+     "language": "python",
+     "metadata": {},
+     "outputs": [
+      {
+       "html": [
+        "<a href='embed_class_long.py' target='_blank'>embed_class_long.py</a><br>"
+       ],
+       "metadata": {},
+       "output_type": "display_data",
+       "text": [
+        "/Users/bgranger/Documents/Computing/IPython/code/ipython/examples/Embedding/embed_class_long.py"
+       ]
+      },
+      {
+       "html": [
+        "<a href='embed_class_short.py' target='_blank'>embed_class_short.py</a><br>"
+       ],
+       "metadata": {},
+       "output_type": "display_data",
+       "text": [
+        "/Users/bgranger/Documents/Computing/IPython/code/ipython/examples/Embedding/embed_class_short.py"
+       ]
+      },
+      {
+       "html": [
+        "<a href='embed_function.py' target='_blank'>embed_function.py</a><br>"
+       ],
+       "metadata": {},
+       "output_type": "display_data",
+       "text": [
+        "/Users/bgranger/Documents/Computing/IPython/code/ipython/examples/Embedding/embed_function.py"
+       ]
+      },
+      {
+       "html": [
+        "<a href='inprocess_qtconsole.py' target='_blank'>inprocess_qtconsole.py</a><br>"
+       ],
+       "metadata": {},
+       "output_type": "display_data",
+       "text": [
+        "/Users/bgranger/Documents/Computing/IPython/code/ipython/examples/Embedding/inprocess_qtconsole.py"
+       ]
+      },
+      {
+       "html": [
+        "<a href='inprocess_terminal.py' target='_blank'>inprocess_terminal.py</a><br>"
+       ],
+       "metadata": {},
+       "output_type": "display_data",
+       "text": [
+        "/Users/bgranger/Documents/Computing/IPython/code/ipython/examples/Embedding/inprocess_terminal.py"
+       ]
+      },
+      {
+       "html": [
+        "<a href='internal_ipkernel.py' target='_blank'>internal_ipkernel.py</a><br>"
+       ],
+       "metadata": {},
+       "output_type": "display_data",
+       "text": [
+        "/Users/bgranger/Documents/Computing/IPython/code/ipython/examples/Embedding/internal_ipkernel.py"
+       ]
+      },
+      {
+       "html": [
+        "<a href='ipkernel_qtapp.py' target='_blank'>ipkernel_qtapp.py</a><br>"
+       ],
+       "metadata": {},
+       "output_type": "display_data",
+       "text": [
+        "/Users/bgranger/Documents/Computing/IPython/code/ipython/examples/Embedding/ipkernel_qtapp.py"
+       ]
+      },
+      {
+       "html": [
+        "<a href='ipkernel_wxapp.py' target='_blank'>ipkernel_wxapp.py</a><br>"
+       ],
+       "metadata": {},
+       "output_type": "display_data",
+       "text": [
+        "/Users/bgranger/Documents/Computing/IPython/code/ipython/examples/Embedding/ipkernel_wxapp.py"
+       ]
+      }
+     ],
+     "prompt_number": 3
     }
    ],
    "metadata": {}
diff --git a/examples/IPython Kernel/Index.ipynb b/examples/IPython Kernel/Index.ipynb
index 4092754..6cb94bb 100644
--- a/examples/IPython Kernel/Index.ipynb
+++ b/examples/IPython Kernel/Index.ipynb
@@ -1,7 +1,7 @@
 {
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   "name": "",
-  "signature": "sha256:0c0453ac3ddbb0ea6397e7f7216e6e005c4d1fe6e089921af39e874a411d7ed1"
+  "signature": "sha256:1f73cbd161515fd1a2c4b327925f1f17e45ed057ffb039a22cf833f61154e000"
  },
  "nbformat": 3,
  "nbformat_minor": 0,
@@ -60,6 +60,63 @@
      "source": [
       "Examples"
      ]
+    },
+    {
+     "cell_type": "markdown",
+     "metadata": {},
+     "source": [
+      "Coming soon."
+     ]
+    },
+    {
+     "cell_type": "heading",
+     "level": 2,
+     "metadata": {},
+     "source": [
+      "Non-notebook examples"
+     ]
+    },
+    {
+     "cell_type": "markdown",
+     "metadata": {},
+     "source": [
+      "This directory also contains examples that are regular Python (`.py`) files."
+     ]
+    },
+    {
+     "cell_type": "code",
+     "collapsed": false,
+     "input": [
+      "from IPython.display import FileLink, display"
+     ],
+     "language": "python",
+     "metadata": {},
+     "outputs": [],
+     "prompt_number": 1
+    },
+    {
+     "cell_type": "code",
+     "collapsed": false,
+     "input": [
+      "files =!ls *.py\n",
+      "for f in files:\n",
+      "    display(FileLink(f))"
+     ],
+     "language": "python",
+     "metadata": {},
+     "outputs": [
+      {
+       "html": [
+        "<a href='ipython-get-history.py' target='_blank'>ipython-get-history.py</a><br>"
+       ],
+       "metadata": {},
+       "output_type": "display_data",
+       "text": [
+        "/Users/bgranger/Documents/Computing/IPython/code/ipython/examples/IPython Kernel/ipython-get-history.py"
+       ]
+      }
+     ],
+     "prompt_number": 2
     }
    ],
    "metadata": {}
diff --git a/examples/Miscellaneous/Index.ipynb b/examples/Miscellaneous/Index.ipynb
index 050adb4..3809ef8 100644
--- a/examples/Miscellaneous/Index.ipynb
+++ b/examples/Miscellaneous/Index.ipynb
@@ -1,7 +1,7 @@
 {
  "metadata": {
   "name": "",
-  "signature": "sha256:5a6c0780821e9af91f7138522ac5dc8d37ad7b23919120fba8d4de23fd6af80f"
+  "signature": "sha256:38d053b68b57c8c0c1208833a9449fc02d62f069f4f0088b0cc3d6f95ce7a455"
  },
  "nbformat": 3,
  "nbformat_minor": 0,
@@ -46,12 +46,146 @@
      ]
     },
     {
+     "cell_type": "markdown",
+     "metadata": {},
+     "source": [
+      "Coming soon."
+     ]
+    },
+    {
      "cell_type": "heading",
      "level": 2,
      "metadata": {},
      "source": [
       "Examples"
      ]
+    },
+    {
+     "cell_type": "markdown",
+     "metadata": {},
+     "source": [
+      "* [Background Jobs](Background Jobs.ipynb)"
+     ]
+    },
+    {
+     "cell_type": "heading",
+     "level": 2,
+     "metadata": {},
+     "source": [
+      "Non-notebook examples"
+     ]
+    },
+    {
+     "cell_type": "markdown",
+     "metadata": {},
+     "source": [
+      "This directory also contains examples that are regular Python (`.py`) files."
+     ]
+    },
+    {
+     "cell_type": "code",
+     "collapsed": false,
+     "input": [
+      "from IPython.display import FileLink, display"
+     ],
+     "language": "python",
+     "metadata": {},
+     "outputs": [],
+     "prompt_number": 1
+    },
+    {
+     "cell_type": "code",
+     "collapsed": false,
+     "input": [
+      "files =!ls *.py\n",
+      "for f in files:\n",
+      "    display(FileLink(f))"
+     ],
+     "language": "python",
+     "metadata": {},
+     "outputs": [
+      {
+       "html": [
+        "<a href='example-demo.py' target='_blank'>example-demo.py</a><br>"
+       ],
+       "metadata": {},
+       "output_type": "display_data",
+       "text": [
+        "/Users/bgranger/Documents/Computing/IPython/code/ipython/examples/Miscellaneous/example-demo.py"
+       ]
+      },
+      {
+       "html": [
+        "<a href='gui-glut.py' target='_blank'>gui-glut.py</a><br>"
+       ],
+       "metadata": {},
+       "output_type": "display_data",
+       "text": [
+        "/Users/bgranger/Documents/Computing/IPython/code/ipython/examples/Miscellaneous/gui-glut.py"
+       ]
+      },
+      {
+       "html": [
+        "<a href='gui-gtk.py' target='_blank'>gui-gtk.py</a><br>"
+       ],
+       "metadata": {},
+       "output_type": "display_data",
+       "text": [
+        "/Users/bgranger/Documents/Computing/IPython/code/ipython/examples/Miscellaneous/gui-gtk.py"
+       ]
+      },
+      {
+       "html": [
+        "<a href='gui-gtk3.py' target='_blank'>gui-gtk3.py</a><br>"
+       ],
+       "metadata": {},
+       "output_type": "display_data",
+       "text": [
+        "/Users/bgranger/Documents/Computing/IPython/code/ipython/examples/Miscellaneous/gui-gtk3.py"
+       ]
+      },
+      {
+       "html": [
+        "<a href='gui-pyglet.py' target='_blank'>gui-pyglet.py</a><br>"
+       ],
+       "metadata": {},
+       "output_type": "display_data",
+       "text": [
+        "/Users/bgranger/Documents/Computing/IPython/code/ipython/examples/Miscellaneous/gui-pyglet.py"
+       ]
+      },
+      {
+       "html": [
+        "<a href='gui-qt.py' target='_blank'>gui-qt.py</a><br>"
+       ],
+       "metadata": {},
+       "output_type": "display_data",
+       "text": [
+        "/Users/bgranger/Documents/Computing/IPython/code/ipython/examples/Miscellaneous/gui-qt.py"
+       ]
+      },
+      {
+       "html": [
+        "<a href='gui-tk.py' target='_blank'>gui-tk.py</a><br>"
+       ],
+       "metadata": {},
+       "output_type": "display_data",
+       "text": [
+        "/Users/bgranger/Documents/Computing/IPython/code/ipython/examples/Miscellaneous/gui-tk.py"
+       ]
+      },
+      {
+       "html": [
+        "<a href='gui-wx.py' target='_blank'>gui-wx.py</a><br>"
+       ],
+       "metadata": {},
+       "output_type": "display_data",
+       "text": [
+        "/Users/bgranger/Documents/Computing/IPython/code/ipython/examples/Miscellaneous/gui-wx.py"
+       ]
+      }
+     ],
+     "prompt_number": 2
     }
    ],
    "metadata": {}
diff --git a/examples/Parallel Computing/Index.ipynb b/examples/Parallel Computing/Index.ipynb
index d448766..e35d505 100644
--- a/examples/Parallel Computing/Index.ipynb
+++ b/examples/Parallel Computing/Index.ipynb
@@ -1,7 +1,7 @@
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  "metadata": {
   "name": "",
-  "signature": "sha256:812b50625c522f2be11a8c19ec003484bb7c67cd1cf388b336a49d5ee187aaff"
+  "signature": "sha256:24e7c8d3c3d2d4b6e7a5b9d01c7e413b736537327a485e257912943fc013a888"
  },
  "nbformat": 3,
  "nbformat_minor": 0,
@@ -85,7 +85,7 @@
      "cell_type": "markdown",
      "metadata": {},
      "source": [
-      "This directory also contains a number of examples that are regular Python (`.py`) files."
+      "This directory also contains examples that are regular Python (`.py`) files."
      ]
     },
     {