##// END OF EJS Templates
Update info on connecting to existing notebook kernels with qtconsole.
Fernando Perez -
Show More
@@ -1,218 +1,234 b''
1 .. _htmlnotebook:
1 .. _htmlnotebook:
2
2
3 =========================
3 =========================
4 An HTML Notebook IPython
4 An HTML Notebook IPython
5 =========================
5 =========================
6
6
7 .. seealso::
7 .. seealso::
8
8
9 :ref:`Installation requirements <installnotebook>` for the Notebook.
9 :ref:`Installation requirements <installnotebook>` for the Notebook.
10
10
11 The IPython Notebook consists of two related components:
11 The IPython Notebook consists of two related components:
12
12
13 * An JSON based Notebook document format for recording and distributing
13 * An JSON based Notebook document format for recording and distributing
14 Python code and rich text.
14 Python code and rich text.
15 * A web-based user interface for authoring and running notebook documents.
15 * A web-based user interface for authoring and running notebook documents.
16
16
17 The Notebook can be used by starting the Notebook server with the
17 The Notebook can be used by starting the Notebook server with the
18 command::
18 command::
19
19
20 $ ipython notebook
20 $ ipython notebook
21
21
22 Note that by default, the notebook doesn't load pylab, it's just a normal
22 Note that by default, the notebook doesn't load pylab, it's just a normal
23 IPython session like any other. If you want pylab support, you must use::
23 IPython session like any other. If you want pylab support, you must use::
24
24
25 $ ipython notebook --pylab
25 $ ipython notebook --pylab
26
26
27 which will behave similar to the terminal and Qt console versions, using your
27 which will behave similar to the terminal and Qt console versions, using your
28 default matplotlib backend and providing floating interactive plot windows. If
28 default matplotlib backend and providing floating interactive plot windows. If
29 you want inline figures, you must manually select the ``inline`` backend::
29 you want inline figures, you must manually select the ``inline`` backend::
30
30
31 $ ipython notebook --pylab=inline
31 $ ipython notebook --pylab=inline
32
32
33 You can start the notebook to communicate via a secure protocol mode using a
33 You can start the notebook to communicate via a secure protocol mode using a
34 self-signed certificate by typing::
34 self-signed certificate by typing::
35
35
36 $ ipython notebook --certfile=mycert.pem
36 $ ipython notebook --certfile=mycert.pem
37
37
38 .. note::
38 .. note::
39
39
40 A self-signed certificate can be generated with openssl. For example:
40 A self-signed certificate can be generated with openssl. For example:
41
41
42 openssl req -x509 -nodes -days 365 -newkey rsa:1024 -keyout mycert.pem -out mycert.pem
42 openssl req -x509 -nodes -days 365 -newkey rsa:1024 -keyout mycert.pem -out mycert.pem
43
43
44 This server uses the same ZeroMQ-based two process kernel architecture as
44 This server uses the same ZeroMQ-based two process kernel architecture as
45 the QT Console as well Tornado for serving HTTP/S requests. Some of the main
45 the QT Console as well Tornado for serving HTTP/S requests. Some of the main
46 features of the Notebook include:
46 features of the Notebook include:
47
47
48 * Display rich data (png/html/latex/svg) in the browser as a result of
48 * Display rich data (png/html/latex/svg) in the browser as a result of
49 computations.
49 computations.
50 * Compose text cells using HTML and Markdown.
50 * Compose text cells using HTML and Markdown.
51 * Import and export notebook documents in range of formats (.ipynb, .py).
51 * Import and export notebook documents in range of formats (.ipynb, .py).
52 * In browser syntax highlighting, tab completion and autoindentation.
52 * In browser syntax highlighting, tab completion and autoindentation.
53 * Inline matplotlib plots that can be stored in Notebook documents and opened
53 * Inline matplotlib plots that can be stored in Notebook documents and opened
54 later.
54 later.
55
55
56 See :ref:`our installation documentation <install_index>` for directions on
56 See :ref:`our installation documentation <install_index>` for directions on
57 how to install the notebook and its dependencies.
57 how to install the notebook and its dependencies.
58
58
59 .. note::
59 .. note::
60
60
61 You can start more than one notebook server at the same time, if you want to
61 You can start more than one notebook server at the same time, if you want to
62 work on notebooks in different directories. By default the first notebook
62 work on notebooks in different directories. By default the first notebook
63 server starts in port 8888, later notebooks search for random ports near
63 server starts in port 8888, later notebooks search for random ports near
64 that one. You can also manually specify the port with the ``--port``
64 that one. You can also manually specify the port with the ``--port``
65 option.
65 option.
66
66
67
67
68 Basic Usage
68 Basic Usage
69 ===========
69 ===========
70
70
71 The landing page of the notebook server application, which we call the IPython
71 The landing page of the notebook server application, which we call the IPython
72 Notebook *dashboard*, shows the notebooks currently available in the directory
72 Notebook *dashboard*, shows the notebooks currently available in the directory
73 in which the application was started, and allows you to create new notebooks.
73 in which the application was started, and allows you to create new notebooks.
74
74
75 A notebook is a combination of two things:
75 A notebook is a combination of two things:
76
76
77 1. An interactive session connected to an IPython kernel, controlled by a web
77 1. An interactive session connected to an IPython kernel, controlled by a web
78 application that can send input to the console and display many types of output
78 application that can send input to the console and display many types of output
79 (text, graphics, mathematics and more). This is the same kernel used by the
79 (text, graphics, mathematics and more). This is the same kernel used by the
80 :ref:`Qt console <qtconsole>`, but in this case the web console sends input in
80 :ref:`Qt console <qtconsole>`, but in this case the web console sends input in
81 persistent cells that you can edit in-place instead of the vertically scrolling
81 persistent cells that you can edit in-place instead of the vertically scrolling
82 terminal style used by the Qt console.
82 terminal style used by the Qt console.
83
83
84 2. A document that can save the inputs and outputs of the session as well as
84 2. A document that can save the inputs and outputs of the session as well as
85 additional text that accompanies the code but is not meant for execution. In
85 additional text that accompanies the code but is not meant for execution. In
86 this way, notebook files serve as a complete computational record of a session
86 this way, notebook files serve as a complete computational record of a session
87 including explanatory text and mathematics, code and resulting figures. These
87 including explanatory text and mathematics, code and resulting figures. These
88 documents are internally JSON files and are saved with the ``.ipynb``
88 documents are internally JSON files and are saved with the ``.ipynb``
89 extension.
89 extension.
90
90
91 If you have ever used the Mathematica or Sage notebooks (the latter is also
91 If you have ever used the Mathematica or Sage notebooks (the latter is also
92 web-based__) you should feel right at home. If you have not, you should be
92 web-based__) you should feel right at home. If you have not, you should be
93 able to learn how to use it in just a few minutes.
93 able to learn how to use it in just a few minutes.
94
94
95 .. __: http://sagenb.org
95 .. __: http://sagenb.org
96
96
97
97
98 Creating and editing notebooks
98 Creating and editing notebooks
99 ------------------------------
99 ------------------------------
100
100
101 You can create new notebooks from the dashboard with the ``New Notebook``
101 You can create new notebooks from the dashboard with the ``New Notebook``
102 button or open existing ones by clicking on their name. Once in a notebook,
102 button or open existing ones by clicking on their name. Once in a notebook,
103 your browser tab will reflect the name of that notebook (prefixed with "IPy:").
103 your browser tab will reflect the name of that notebook (prefixed with "IPy:").
104 The URL for that notebook is not meant to be human-readable and is *not*
104 The URL for that notebook is not meant to be human-readable and is *not*
105 persistent across invocations of the notebook server.
105 persistent across invocations of the notebook server.
106
106
107 You can also drag and drop into the area listing files any python file: it
107 You can also drag and drop into the area listing files any python file: it
108 will be imported into a notebook with the same name (but ``.ipynb`` extension)
108 will be imported into a notebook with the same name (but ``.ipynb`` extension)
109 located in the directory where the notebook server was started. This notebook
109 located in the directory where the notebook server was started. This notebook
110 will consist of a single cell with all the code in the file, which you can
110 will consist of a single cell with all the code in the file, which you can
111 later manually partition into individual cells for gradual execution, add text
111 later manually partition into individual cells for gradual execution, add text
112 and graphics, etc.
112 and graphics, etc.
113
113
114 Workflow and limitations
114 Workflow and limitations
115 ------------------------
115 ------------------------
116
116
117 The normal workflow in a notebook is quite similar to a normal IPython session,
117 The normal workflow in a notebook is quite similar to a normal IPython session,
118 with the difference that you can edit a cell in-place multiple times until you
118 with the difference that you can edit a cell in-place multiple times until you
119 obtain the desired results rather than having to rerun separate scripts with
119 obtain the desired results rather than having to rerun separate scripts with
120 the ``%run`` magic (though magics also work in the notebook). Typically
120 the ``%run`` magic (though magics also work in the notebook). Typically
121 you'll work on a problem in pieces, organizing related pieces into cells and
121 you'll work on a problem in pieces, organizing related pieces into cells and
122 moving forward as previous parts work correctly. This is much more convenient
122 moving forward as previous parts work correctly. This is much more convenient
123 for interactive exploration than breaking up a computation into scripts that
123 for interactive exploration than breaking up a computation into scripts that
124 must be executed together, especially if parts of them take a long time to run
124 must be executed together, especially if parts of them take a long time to run
125 (In the traditional terminal-based IPython, you can use tricks with namespaces
125 (In the traditional terminal-based IPython, you can use tricks with namespaces
126 and ``%run -i`` to achieve this capability, but we think the notebook is a more
126 and ``%run -i`` to achieve this capability, but we think the notebook is a more
127 natural solution for that kind of problem).
127 natural solution for that kind of problem).
128
128
129 The only significant limitation the notebook currently has, compared to the qt
129 The only significant limitation the notebook currently has, compared to the qt
130 console, is that it can not run any code that expects input from the kernel
130 console, is that it can not run any code that expects input from the kernel
131 (such as scripts that call :func:`raw_input`). Very importantly, this means
131 (such as scripts that call :func:`raw_input`). Very importantly, this means
132 that the ``%debug`` magic does *not* work in the notebook! We intend to
132 that the ``%debug`` magic does *not* work in the notebook! We intend to
133 correct this limitation, but in the meantime, there is a way to debug problems
133 correct this limitation, but in the meantime, there is a way to debug problems
134 in the notebook: you can attach a Qt console to your existing notebook kernel,
134 in the notebook: you can attach a Qt console to your existing notebook kernel,
135 and run ``%debug`` from the Qt console. Simply look for the lines in the
135 and run ``%debug`` from the Qt console. If your notebook is running on a local
136 terminal where you started the kernel that read something like::
136 computer (i.e. if you are accessing it via your localhost address at
137 127.0.0.1), you can just type ``%qtconsole`` in the notebook and a Qt console
138 will open up connected to that same kernel.
139
140 In general, the notebook server prints the full details of how to connect to
141 each kernel at the terminal, with lines like:
137
142
138 [IPKernelApp] To connect another client to this kernel, use:
143 [IPKernelApp] To connect another client to this kernel, use:
139 [IPKernelApp] --existing --shell=53328 --iopub=53817 --stdin=34736 --hb=45543
144 [IPKernelApp] --existing kernel-3bb93edd-6b5a-455c-99c8-3b658f45dde5.json
145
146 This is the name of a JSON file that contains all the port and validation
147 information necessary to connect to the kernel. You can manually start a
148 qt console with::
149
150 ipython qtconsole --existing kernel-3bb93edd-6b5a-455c-99c8-3b658f45dde5.json
151
152 and if you only have a single kernel running, simply typing::
140
153
141 and then start a qt console pointing to that kernel::
154 ipython qtconsole --existing
142
155
143 ipython qtconsole --existing --shell=53328 --iopub=53817 --stdin=34736 --hb=45543
156 will automatically find it (it will always find the most recently started
157 kernel if there is more than one). You can also request this connection data
158 by typing ``%connect_info``; this will print the same file information as well
159 as the content of the JSON data structure it contains.
144
160
145
161
146 Text input
162 Text input
147 ----------
163 ----------
148
164
149 In addition to code cells and the output they produce (such as figures), you
165 In addition to code cells and the output they produce (such as figures), you
150 can also type text not meant for execution. To type text, change the type of a
166 can also type text not meant for execution. To type text, change the type of a
151 cell from ``Code`` to ``Markdown`` by using the button or the :kbd:`Ctrl-m m`
167 cell from ``Code`` to ``Markdown`` by using the button or the :kbd:`Ctrl-m m`
152 keybinding (see below). You can then type any text in Markdown_ syntax, as
168 keybinding (see below). You can then type any text in Markdown_ syntax, as
153 well as mathematical expressions if you use ``$...$`` for inline math or
169 well as mathematical expressions if you use ``$...$`` for inline math or
154 ``$$...$$`` for displayed math.
170 ``$$...$$`` for displayed math.
155
171
156 Exporting a notebook
172 Exporting a notebook
157 --------------------
173 --------------------
158
174
159 If you want to provide others with a static HTML or PDF view of your notebook,
175 If you want to provide others with a static HTML or PDF view of your notebook,
160 use the ``Print`` button. This opens a static view of the document, which you
176 use the ``Print`` button. This opens a static view of the document, which you
161 can print to PDF using your operating system's facilities, or save to a file
177 can print to PDF using your operating system's facilities, or save to a file
162 with your web browser's 'Save' option (note that typically, this will create
178 with your web browser's 'Save' option (note that typically, this will create
163 both an html file *and* a directory called `notebook_name_files` next to it
179 both an html file *and* a directory called `notebook_name_files` next to it
164 that contains all the necessary style information, so if you intend to share
180 that contains all the necessary style information, so if you intend to share
165 this, you must send the directory along with the main html file).
181 this, you must send the directory along with the main html file).
166
182
167 The `Download` button lets you save a notebook file to the Download area
183 The `Download` button lets you save a notebook file to the Download area
168 configured by your web browser (particularly useful if you are running the
184 configured by your web browser (particularly useful if you are running the
169 notebook server on a remote host and need a file locally). The notebook is
185 notebook server on a remote host and need a file locally). The notebook is
170 saved by default with the ``.ipynb`` extension and the files contain JSON data
186 saved by default with the ``.ipynb`` extension and the files contain JSON data
171 that is not meant for human editing or consumption. But you can always export
187 that is not meant for human editing or consumption. But you can always export
172 the input part of a notebook to a plain python script by choosing Python format
188 the input part of a notebook to a plain python script by choosing Python format
173 in the `Download` drop list. This removes all output and saves the text cells
189 in the `Download` drop list. This removes all output and saves the text cells
174 in comment areas.
190 in comment areas.
175
191
176 .. warning::
192 .. warning::
177
193
178 While in simple cases you can roundtrip a notebook to Python, edit the
194 While in simple cases you can roundtrip a notebook to Python, edit the
179 python file and import it back without loss, this is in general *not
195 python file and import it back without loss, this is in general *not
180 guaranteed to work at all*. As the notebook format evolves in complexity,
196 guaranteed to work at all*. As the notebook format evolves in complexity,
181 there will be attributes of the notebook that will not survive a roundtrip
197 there will be attributes of the notebook that will not survive a roundtrip
182 through the Python form. You should think of the Python format as a way to
198 through the Python form. You should think of the Python format as a way to
183 output a script version of a notebook and the import capabilities as a way
199 output a script version of a notebook and the import capabilities as a way
184 to load existing code to get a notebook started. But the Python version is
200 to load existing code to get a notebook started. But the Python version is
185 *not* an alternate notebook format.
201 *not* an alternate notebook format.
186
202
187
203
188 Keyboard use
204 Keyboard use
189 ------------
205 ------------
190
206
191 All actions in the notebook can be achieved with the mouse, but we have also
207 All actions in the notebook can be achieved with the mouse, but we have also
192 added keyboard shortcuts for the most common ones, so that productive use of
208 added keyboard shortcuts for the most common ones, so that productive use of
193 the notebook can be achieved with minimal mouse intervention. The main
209 the notebook can be achieved with minimal mouse intervention. The main
194 key bindings you need to remember are:
210 key bindings you need to remember are:
195
211
196 * :kbd:`Shift-Enter`: execute the current cell (similar to the Qt console),
212 * :kbd:`Shift-Enter`: execute the current cell (similar to the Qt console),
197 show output (if any) and create a new cell below. Note that in the notebook,
213 show output (if any) and create a new cell below. Note that in the notebook,
198 simply using :kbd:`Enter` *never* forces execution, it simply inserts a new
214 simply using :kbd:`Enter` *never* forces execution, it simply inserts a new
199 line in the current cell. Therefore, in the notebook you must always use
215 line in the current cell. Therefore, in the notebook you must always use
200 :kbd:`Shift-Enter` to get execution (or use the mouse and click on the ``Run
216 :kbd:`Shift-Enter` to get execution (or use the mouse and click on the ``Run
201 Selected`` button).
217 Selected`` button).
202
218
203 * :kbd:`Ctrl-Enter`: execute the current cell in "terminal mode", where any
219 * :kbd:`Ctrl-Enter`: execute the current cell in "terminal mode", where any
204 output is shown but the cursor stays in the current cell, whose input
220 output is shown but the cursor stays in the current cell, whose input
205 area is flushed empty. This is convenient to do quick in-place experiments
221 area is flushed empty. This is convenient to do quick in-place experiments
206 or query things like filesystem content without creating additional cells you
222 or query things like filesystem content without creating additional cells you
207 may not want saved in your notebook.
223 may not want saved in your notebook.
208
224
209 * :kbd:`Ctrl-m`: this is the prefix for all other keybindings, which consist
225 * :kbd:`Ctrl-m`: this is the prefix for all other keybindings, which consist
210 of an additional single letter. Type :kbd:`Ctrl-m h` (that is, the sole
226 of an additional single letter. Type :kbd:`Ctrl-m h` (that is, the sole
211 letter :kbd:`h` after :kbd:`Ctrl-m`) and IPython will show you the remaining
227 letter :kbd:`h` after :kbd:`Ctrl-m`) and IPython will show you the remaining
212 available keybindings.
228 available keybindings.
213
229
214
230
215 Notebook document format
231 Notebook document format
216 ========================
232 ========================
217
233
218
234
General Comments 0
You need to be logged in to leave comments. Login now