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1 | 1 | .. _htmlnotebook: |
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2 | 2 | |
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3 | 3 | ========================= |
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4 | 4 | An HTML Notebook IPython |
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5 | 5 | ========================= |
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6 | 6 | |
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7 | 7 | .. seealso:: |
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8 | 8 | |
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9 | 9 | :ref:`Installation requirements <installnotebook>` for the Notebook. |
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10 | 10 | |
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11 | 11 | The IPython Notebook consists of two related components: |
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12 | 12 | |
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13 | 13 | * An JSON based Notebook document format for recording and distributing |
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14 | 14 | Python code and rich text. |
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15 | 15 | * A web-based user interface for authoring and running notebook documents. |
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16 | 16 | |
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17 | 17 | The Notebook can be used by starting the Notebook server with the |
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18 | 18 | command:: |
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19 | 19 | |
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20 | 20 | $ ipython notebook |
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21 | 21 | |
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22 | 22 | Note that by default, the notebook doesn't load pylab, it's just a normal |
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23 | 23 | IPython session like any other. If you want pylab support, you must use:: |
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24 | 24 | |
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25 | 25 | $ ipython notebook --pylab |
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26 | 26 | |
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27 | 27 | which will behave similar to the terminal and Qt console versions, using your |
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28 | 28 | default matplotlib backend and providing floating interactive plot windows. If |
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29 | 29 | you want inline figures, you must manually select the ``inline`` backend:: |
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30 | 30 | |
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31 | 31 | $ ipython notebook --pylab=inline |
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32 | 32 | |
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33 | 33 | You can start the notebook to communicate via a secure protocol mode using a |
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34 | 34 | self-signed certificate by typing:: |
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35 | 35 | |
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36 | 36 | $ ipython notebook --certfile=mycert.pem |
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37 | 37 | |
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38 | 38 | .. note:: |
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39 | 39 | |
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40 | 40 | A self-signed certificate can be generated with openssl. For example: |
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41 | 41 | |
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42 | 42 | openssl req -x509 -nodes -days 365 -newkey rsa:1024 -keyout mycert.pem -out mycert.pem |
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43 | 43 | |
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44 | 44 | This server uses the same ZeroMQ-based two process kernel architecture as |
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45 | 45 | the QT Console as well Tornado for serving HTTP/S requests. Some of the main |
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46 | 46 | features of the Notebook include: |
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47 | 47 | |
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48 | 48 | * Display rich data (png/html/latex/svg) in the browser as a result of |
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49 | 49 | computations. |
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50 | 50 | * Compose text cells using HTML and Markdown. |
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51 | 51 | * Import and export notebook documents in range of formats (.ipynb, .py). |
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52 | 52 | * In browser syntax highlighting, tab completion and autoindentation. |
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53 | 53 | * Inline matplotlib plots that can be stored in Notebook documents and opened |
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54 | 54 | later. |
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55 | 55 | |
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56 | 56 | See :ref:`our installation documentation <install_index>` for directions on |
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57 | 57 | how to install the notebook and its dependencies. |
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58 | 58 | |
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59 | 59 | .. note:: |
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60 | 60 | |
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61 | 61 | You can start more than one notebook server at the same time, if you want to |
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62 | 62 | work on notebooks in different directories. By default the first notebook |
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63 | 63 | server starts in port 8888, later notebooks search for random ports near |
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64 | 64 | that one. You can also manually specify the port with the ``--port`` |
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65 | 65 | option. |
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66 | 66 | |
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67 | 67 | |
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68 | 68 | Basic Usage |
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69 | 69 | =========== |
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70 | 70 | |
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71 | 71 | The landing page of the notebook server application, which we call the IPython |
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72 | 72 | Notebook *dashboard*, shows the notebooks currently available in the directory |
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73 | 73 | in which the application was started, and allows you to create new notebooks. |
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74 | 74 | |
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75 | 75 | A notebook is a combination of two things: |
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76 | 76 | |
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77 | 77 | 1. An interactive session connected to an IPython kernel, controlled by a web |
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78 | 78 | application that can send input to the console and display many types of output |
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79 | 79 | (text, graphics, mathematics and more). This is the same kernel used by the |
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80 | 80 | :ref:`Qt console <qtconsole>`, but in this case the web console sends input in |
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81 | 81 | persistent cells that you can edit in-place instead of the vertically scrolling |
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82 | 82 | terminal style used by the Qt console. |
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83 | 83 | |
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84 | 84 | 2. A document that can save the inputs and outputs of the session as well as |
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85 | 85 | additional text that accompanies the code but is not meant for execution. In |
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86 | 86 | this way, notebook files serve as a complete computational record of a session |
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87 | 87 | including explanatory text and mathematics, code and resulting figures. These |
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88 | 88 | documents are internally JSON files and are saved with the ``.ipynb`` |
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89 | 89 | extension. |
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90 | 90 | |
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91 | 91 | If you have ever used the Mathematica or Sage notebooks (the latter is also |
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92 | 92 | web-based__) you should feel right at home. If you have not, you should be |
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93 | 93 | able to learn how to use it in just a few minutes. |
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94 | 94 | |
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95 | 95 | .. __: http://sagenb.org |
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96 | 96 | |
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97 | 97 | |
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98 | 98 | Creating and editing notebooks |
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99 | 99 | ------------------------------ |
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100 | 100 | |
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101 | 101 | You can create new notebooks from the dashboard with the ``New Notebook`` |
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102 | 102 | button or open existing ones by clicking on their name. Once in a notebook, |
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103 | 103 | your browser tab will reflect the name of that notebook (prefixed with "IPy:"). |
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104 | 104 | The URL for that notebook is not meant to be human-readable and is *not* |
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105 | 105 | persistent across invocations of the notebook server. |
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106 | 106 | |
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107 | 107 | You can also drag and drop into the area listing files any python file: it |
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108 | 108 | will be imported into a notebook with the same name (but ``.ipynb`` extension) |
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109 | 109 | located in the directory where the notebook server was started. This notebook |
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110 | 110 | will consist of a single cell with all the code in the file, which you can |
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111 | 111 | later manually partition into individual cells for gradual execution, add text |
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112 | 112 | and graphics, etc. |
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113 | 113 | |
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114 | 114 | Workflow and limitations |
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115 | 115 | ------------------------ |
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116 | 116 | |
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117 | 117 | The normal workflow in a notebook is quite similar to a normal IPython session, |
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118 | 118 | with the difference that you can edit a cell in-place multiple times until you |
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119 | 119 | obtain the desired results rather than having to rerun separate scripts with |
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120 | 120 | the ``%run`` magic (though magics also work in the notebook). Typically |
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121 | 121 | you'll work on a problem in pieces, organizing related pieces into cells and |
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122 | 122 | moving forward as previous parts work correctly. This is much more convenient |
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123 | 123 | for interactive exploration than breaking up a computation into scripts that |
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124 | 124 | must be executed together, especially if parts of them take a long time to run |
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125 | 125 | (In the traditional terminal-based IPython, you can use tricks with namespaces |
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126 | 126 | and ``%run -i`` to achieve this capability, but we think the notebook is a more |
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127 | 127 | natural solution for that kind of problem). |
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128 | 128 | |
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129 | 129 | The only significant limitation the notebook currently has, compared to the qt |
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130 | 130 | console, is that it can not run any code that expects input from the kernel |
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131 | 131 | (such as scripts that call :func:`raw_input`). Very importantly, this means |
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132 | 132 | that the ``%debug`` magic does *not* work in the notebook! We intend to |
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133 | 133 | correct this limitation, but in the meantime, there is a way to debug problems |
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134 | 134 | in the notebook: you can attach a Qt console to your existing notebook kernel, |
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135 |
and run ``%debug`` from the Qt console. |
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136 | terminal where you started the kernel that read something like:: | |
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135 | and run ``%debug`` from the Qt console. If your notebook is running on a local | |
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136 | computer (i.e. if you are accessing it via your localhost address at | |
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137 | 127.0.0.1), you can just type ``%qtconsole`` in the notebook and a Qt console | |
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138 | will open up connected to that same kernel. | |
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139 | ||
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140 | In general, the notebook server prints the full details of how to connect to | |
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141 | each kernel at the terminal, with lines like: | |
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137 | 142 | |
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138 | 143 | [IPKernelApp] To connect another client to this kernel, use: |
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139 | [IPKernelApp] --existing --shell=53328 --iopub=53817 --stdin=34736 --hb=45543 | |
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144 | [IPKernelApp] --existing kernel-3bb93edd-6b5a-455c-99c8-3b658f45dde5.json | |
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145 | ||
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146 | This is the name of a JSON file that contains all the port and validation | |
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147 | information necessary to connect to the kernel. You can manually start a | |
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148 | qt console with:: | |
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149 | ||
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150 | ipython qtconsole --existing kernel-3bb93edd-6b5a-455c-99c8-3b658f45dde5.json | |
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151 | ||
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152 | and if you only have a single kernel running, simply typing:: | |
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140 | 153 | |
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141 | and then start a qt console pointing to that kernel:: | |
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154 | ipython qtconsole --existing | |
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142 | 155 | |
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143 | ipython qtconsole --existing --shell=53328 --iopub=53817 --stdin=34736 --hb=45543 | |
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156 | will automatically find it (it will always find the most recently started | |
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157 | kernel if there is more than one). You can also request this connection data | |
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158 | by typing ``%connect_info``; this will print the same file information as well | |
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159 | as the content of the JSON data structure it contains. | |
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144 | 160 | |
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145 | 161 | |
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146 | 162 | Text input |
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147 | 163 | ---------- |
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148 | 164 | |
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149 | 165 | In addition to code cells and the output they produce (such as figures), you |
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150 | 166 | can also type text not meant for execution. To type text, change the type of a |
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151 | 167 | cell from ``Code`` to ``Markdown`` by using the button or the :kbd:`Ctrl-m m` |
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152 | 168 | keybinding (see below). You can then type any text in Markdown_ syntax, as |
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153 | 169 | well as mathematical expressions if you use ``$...$`` for inline math or |
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154 | 170 | ``$$...$$`` for displayed math. |
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155 | 171 | |
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156 | 172 | Exporting a notebook |
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157 | 173 | -------------------- |
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158 | 174 | |
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159 | 175 | If you want to provide others with a static HTML or PDF view of your notebook, |
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160 | 176 | use the ``Print`` button. This opens a static view of the document, which you |
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161 | 177 | can print to PDF using your operating system's facilities, or save to a file |
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162 | 178 | with your web browser's 'Save' option (note that typically, this will create |
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163 | 179 | both an html file *and* a directory called `notebook_name_files` next to it |
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164 | 180 | that contains all the necessary style information, so if you intend to share |
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165 | 181 | this, you must send the directory along with the main html file). |
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166 | 182 | |
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167 | 183 | The `Download` button lets you save a notebook file to the Download area |
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168 | 184 | configured by your web browser (particularly useful if you are running the |
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169 | 185 | notebook server on a remote host and need a file locally). The notebook is |
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170 | 186 | saved by default with the ``.ipynb`` extension and the files contain JSON data |
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171 | 187 | that is not meant for human editing or consumption. But you can always export |
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172 | 188 | the input part of a notebook to a plain python script by choosing Python format |
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173 | 189 | in the `Download` drop list. This removes all output and saves the text cells |
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174 | 190 | in comment areas. |
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175 | 191 | |
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176 | 192 | .. warning:: |
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177 | 193 | |
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178 | 194 | While in simple cases you can roundtrip a notebook to Python, edit the |
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179 | 195 | python file and import it back without loss, this is in general *not |
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180 | 196 | guaranteed to work at all*. As the notebook format evolves in complexity, |
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181 | 197 | there will be attributes of the notebook that will not survive a roundtrip |
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182 | 198 | through the Python form. You should think of the Python format as a way to |
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183 | 199 | output a script version of a notebook and the import capabilities as a way |
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184 | 200 | to load existing code to get a notebook started. But the Python version is |
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185 | 201 | *not* an alternate notebook format. |
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186 | 202 | |
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187 | 203 | |
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188 | 204 | Keyboard use |
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189 | 205 | ------------ |
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190 | 206 | |
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191 | 207 | All actions in the notebook can be achieved with the mouse, but we have also |
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192 | 208 | added keyboard shortcuts for the most common ones, so that productive use of |
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193 | 209 | the notebook can be achieved with minimal mouse intervention. The main |
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194 | 210 | key bindings you need to remember are: |
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195 | 211 | |
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196 | 212 | * :kbd:`Shift-Enter`: execute the current cell (similar to the Qt console), |
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197 | 213 | show output (if any) and create a new cell below. Note that in the notebook, |
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198 | 214 | simply using :kbd:`Enter` *never* forces execution, it simply inserts a new |
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199 | 215 | line in the current cell. Therefore, in the notebook you must always use |
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200 | 216 | :kbd:`Shift-Enter` to get execution (or use the mouse and click on the ``Run |
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201 | 217 | Selected`` button). |
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202 | 218 | |
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203 | 219 | * :kbd:`Ctrl-Enter`: execute the current cell in "terminal mode", where any |
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204 | 220 | output is shown but the cursor stays in the current cell, whose input |
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205 | 221 | area is flushed empty. This is convenient to do quick in-place experiments |
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206 | 222 | or query things like filesystem content without creating additional cells you |
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207 | 223 | may not want saved in your notebook. |
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208 | 224 | |
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209 | 225 | * :kbd:`Ctrl-m`: this is the prefix for all other keybindings, which consist |
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210 | 226 | of an additional single letter. Type :kbd:`Ctrl-m h` (that is, the sole |
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211 | 227 | letter :kbd:`h` after :kbd:`Ctrl-m`) and IPython will show you the remaining |
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212 | 228 | available keybindings. |
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213 | 229 | |
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214 | 230 | |
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215 | 231 | Notebook document format |
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216 | 232 | ======================== |
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217 | 233 | |
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218 | 234 |
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