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Update info on connecting to existing notebook kernels with qtconsole.
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1 1 .. _htmlnotebook:
2 2
3 3 =========================
4 4 An HTML Notebook IPython
5 5 =========================
6 6
7 7 .. seealso::
8 8
9 9 :ref:`Installation requirements <installnotebook>` for the Notebook.
10 10
11 11 The IPython Notebook consists of two related components:
12 12
13 13 * An JSON based Notebook document format for recording and distributing
14 14 Python code and rich text.
15 15 * A web-based user interface for authoring and running notebook documents.
16 16
17 17 The Notebook can be used by starting the Notebook server with the
18 18 command::
19 19
20 20 $ ipython notebook
21 21
22 22 Note that by default, the notebook doesn't load pylab, it's just a normal
23 23 IPython session like any other. If you want pylab support, you must use::
24 24
25 25 $ ipython notebook --pylab
26 26
27 27 which will behave similar to the terminal and Qt console versions, using your
28 28 default matplotlib backend and providing floating interactive plot windows. If
29 29 you want inline figures, you must manually select the ``inline`` backend::
30 30
31 31 $ ipython notebook --pylab=inline
32 32
33 33 You can start the notebook to communicate via a secure protocol mode using a
34 34 self-signed certificate by typing::
35 35
36 36 $ ipython notebook --certfile=mycert.pem
37 37
38 38 .. note::
39 39
40 40 A self-signed certificate can be generated with openssl. For example:
41 41
42 42 openssl req -x509 -nodes -days 365 -newkey rsa:1024 -keyout mycert.pem -out mycert.pem
43 43
44 44 This server uses the same ZeroMQ-based two process kernel architecture as
45 45 the QT Console as well Tornado for serving HTTP/S requests. Some of the main
46 46 features of the Notebook include:
47 47
48 48 * Display rich data (png/html/latex/svg) in the browser as a result of
49 49 computations.
50 50 * Compose text cells using HTML and Markdown.
51 51 * Import and export notebook documents in range of formats (.ipynb, .py).
52 52 * In browser syntax highlighting, tab completion and autoindentation.
53 53 * Inline matplotlib plots that can be stored in Notebook documents and opened
54 54 later.
55 55
56 56 See :ref:`our installation documentation <install_index>` for directions on
57 57 how to install the notebook and its dependencies.
58 58
59 59 .. note::
60 60
61 61 You can start more than one notebook server at the same time, if you want to
62 62 work on notebooks in different directories. By default the first notebook
63 63 server starts in port 8888, later notebooks search for random ports near
64 64 that one. You can also manually specify the port with the ``--port``
65 65 option.
66 66
67 67
68 68 Basic Usage
69 69 ===========
70 70
71 71 The landing page of the notebook server application, which we call the IPython
72 72 Notebook *dashboard*, shows the notebooks currently available in the directory
73 73 in which the application was started, and allows you to create new notebooks.
74 74
75 75 A notebook is a combination of two things:
76 76
77 77 1. An interactive session connected to an IPython kernel, controlled by a web
78 78 application that can send input to the console and display many types of output
79 79 (text, graphics, mathematics and more). This is the same kernel used by the
80 80 :ref:`Qt console <qtconsole>`, but in this case the web console sends input in
81 81 persistent cells that you can edit in-place instead of the vertically scrolling
82 82 terminal style used by the Qt console.
83 83
84 84 2. A document that can save the inputs and outputs of the session as well as
85 85 additional text that accompanies the code but is not meant for execution. In
86 86 this way, notebook files serve as a complete computational record of a session
87 87 including explanatory text and mathematics, code and resulting figures. These
88 88 documents are internally JSON files and are saved with the ``.ipynb``
89 89 extension.
90 90
91 91 If you have ever used the Mathematica or Sage notebooks (the latter is also
92 92 web-based__) you should feel right at home. If you have not, you should be
93 93 able to learn how to use it in just a few minutes.
94 94
95 95 .. __: http://sagenb.org
96 96
97 97
98 98 Creating and editing notebooks
99 99 ------------------------------
100 100
101 101 You can create new notebooks from the dashboard with the ``New Notebook``
102 102 button or open existing ones by clicking on their name. Once in a notebook,
103 103 your browser tab will reflect the name of that notebook (prefixed with "IPy:").
104 104 The URL for that notebook is not meant to be human-readable and is *not*
105 105 persistent across invocations of the notebook server.
106 106
107 107 You can also drag and drop into the area listing files any python file: it
108 108 will be imported into a notebook with the same name (but ``.ipynb`` extension)
109 109 located in the directory where the notebook server was started. This notebook
110 110 will consist of a single cell with all the code in the file, which you can
111 111 later manually partition into individual cells for gradual execution, add text
112 112 and graphics, etc.
113 113
114 114 Workflow and limitations
115 115 ------------------------
116 116
117 117 The normal workflow in a notebook is quite similar to a normal IPython session,
118 118 with the difference that you can edit a cell in-place multiple times until you
119 119 obtain the desired results rather than having to rerun separate scripts with
120 120 the ``%run`` magic (though magics also work in the notebook). Typically
121 121 you'll work on a problem in pieces, organizing related pieces into cells and
122 122 moving forward as previous parts work correctly. This is much more convenient
123 123 for interactive exploration than breaking up a computation into scripts that
124 124 must be executed together, especially if parts of them take a long time to run
125 125 (In the traditional terminal-based IPython, you can use tricks with namespaces
126 126 and ``%run -i`` to achieve this capability, but we think the notebook is a more
127 127 natural solution for that kind of problem).
128 128
129 129 The only significant limitation the notebook currently has, compared to the qt
130 130 console, is that it can not run any code that expects input from the kernel
131 131 (such as scripts that call :func:`raw_input`). Very importantly, this means
132 132 that the ``%debug`` magic does *not* work in the notebook! We intend to
133 133 correct this limitation, but in the meantime, there is a way to debug problems
134 134 in the notebook: you can attach a Qt console to your existing notebook kernel,
135 and run ``%debug`` from the Qt console. Simply look for the lines in the
136 terminal where you started the kernel that read something like::
135 and run ``%debug`` from the Qt console. If your notebook is running on a local
136 computer (i.e. if you are accessing it via your localhost address at
137 127.0.0.1), you can just type ``%qtconsole`` in the notebook and a Qt console
138 will open up connected to that same kernel.
139
140 In general, the notebook server prints the full details of how to connect to
141 each kernel at the terminal, with lines like:
137 142
138 143 [IPKernelApp] To connect another client to this kernel, use:
139 [IPKernelApp] --existing --shell=53328 --iopub=53817 --stdin=34736 --hb=45543
144 [IPKernelApp] --existing kernel-3bb93edd-6b5a-455c-99c8-3b658f45dde5.json
145
146 This is the name of a JSON file that contains all the port and validation
147 information necessary to connect to the kernel. You can manually start a
148 qt console with::
149
150 ipython qtconsole --existing kernel-3bb93edd-6b5a-455c-99c8-3b658f45dde5.json
151
152 and if you only have a single kernel running, simply typing::
140 153
141 and then start a qt console pointing to that kernel::
154 ipython qtconsole --existing
142 155
143 ipython qtconsole --existing --shell=53328 --iopub=53817 --stdin=34736 --hb=45543
156 will automatically find it (it will always find the most recently started
157 kernel if there is more than one). You can also request this connection data
158 by typing ``%connect_info``; this will print the same file information as well
159 as the content of the JSON data structure it contains.
144 160
145 161
146 162 Text input
147 163 ----------
148 164
149 165 In addition to code cells and the output they produce (such as figures), you
150 166 can also type text not meant for execution. To type text, change the type of a
151 167 cell from ``Code`` to ``Markdown`` by using the button or the :kbd:`Ctrl-m m`
152 168 keybinding (see below). You can then type any text in Markdown_ syntax, as
153 169 well as mathematical expressions if you use ``$...$`` for inline math or
154 170 ``$$...$$`` for displayed math.
155 171
156 172 Exporting a notebook
157 173 --------------------
158 174
159 175 If you want to provide others with a static HTML or PDF view of your notebook,
160 176 use the ``Print`` button. This opens a static view of the document, which you
161 177 can print to PDF using your operating system's facilities, or save to a file
162 178 with your web browser's 'Save' option (note that typically, this will create
163 179 both an html file *and* a directory called `notebook_name_files` next to it
164 180 that contains all the necessary style information, so if you intend to share
165 181 this, you must send the directory along with the main html file).
166 182
167 183 The `Download` button lets you save a notebook file to the Download area
168 184 configured by your web browser (particularly useful if you are running the
169 185 notebook server on a remote host and need a file locally). The notebook is
170 186 saved by default with the ``.ipynb`` extension and the files contain JSON data
171 187 that is not meant for human editing or consumption. But you can always export
172 188 the input part of a notebook to a plain python script by choosing Python format
173 189 in the `Download` drop list. This removes all output and saves the text cells
174 190 in comment areas.
175 191
176 192 .. warning::
177 193
178 194 While in simple cases you can roundtrip a notebook to Python, edit the
179 195 python file and import it back without loss, this is in general *not
180 196 guaranteed to work at all*. As the notebook format evolves in complexity,
181 197 there will be attributes of the notebook that will not survive a roundtrip
182 198 through the Python form. You should think of the Python format as a way to
183 199 output a script version of a notebook and the import capabilities as a way
184 200 to load existing code to get a notebook started. But the Python version is
185 201 *not* an alternate notebook format.
186 202
187 203
188 204 Keyboard use
189 205 ------------
190 206
191 207 All actions in the notebook can be achieved with the mouse, but we have also
192 208 added keyboard shortcuts for the most common ones, so that productive use of
193 209 the notebook can be achieved with minimal mouse intervention. The main
194 210 key bindings you need to remember are:
195 211
196 212 * :kbd:`Shift-Enter`: execute the current cell (similar to the Qt console),
197 213 show output (if any) and create a new cell below. Note that in the notebook,
198 214 simply using :kbd:`Enter` *never* forces execution, it simply inserts a new
199 215 line in the current cell. Therefore, in the notebook you must always use
200 216 :kbd:`Shift-Enter` to get execution (or use the mouse and click on the ``Run
201 217 Selected`` button).
202 218
203 219 * :kbd:`Ctrl-Enter`: execute the current cell in "terminal mode", where any
204 220 output is shown but the cursor stays in the current cell, whose input
205 221 area is flushed empty. This is convenient to do quick in-place experiments
206 222 or query things like filesystem content without creating additional cells you
207 223 may not want saved in your notebook.
208 224
209 225 * :kbd:`Ctrl-m`: this is the prefix for all other keybindings, which consist
210 226 of an additional single letter. Type :kbd:`Ctrl-m h` (that is, the sole
211 227 letter :kbd:`h` after :kbd:`Ctrl-m`) and IPython will show you the remaining
212 228 available keybindings.
213 229
214 230
215 231 Notebook document format
216 232 ========================
217 233
218 234
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