Merge pull request #4540 from takluyver/apidocs3

Apidocs3

IPython/core/inputsplitter.py

@@ -1,661 +1,661 b''
 """Analysis of text input into executable blocks.
 
 The main class in this module, :class:`InputSplitter`, is designed to break
 input from either interactive, line-by-line environments or block-based ones,
 into standalone blocks that can be executed by Python as 'single' statements
 (thus triggering sys.displayhook).
 
 A companion, :class:`IPythonInputSplitter`, provides the same functionality but
 with full support for the extended IPython syntax (magics, system calls, etc).
 
 For more details, see the class docstring below.
 
 Syntax Transformations
 ----------------------
 
 One of the main jobs of the code in this file is to apply all syntax
 transformations that make up 'the IPython language', i.e. magics, shell
 escapes, etc.  All transformations should be implemented as *fully stateless*
 entities, that simply take one line as their input and return a line.
 Internally for implementation purposes they may be a normal function or a
 callable object, but the only input they receive will be a single line and they
 should only return a line, without holding any data-dependent state between
 calls.
 
 As an example, the EscapedTransformer is a class so we can more clearly group
 together the functionality of dispatching to individual functions based on the
 starting escape character, but the only method for public use is its call
 method.
 
 
 ToDo
 ----
 
 - Should we make push() actually raise an exception once push_accepts_more()
   returns False?
 
 - Naming cleanups.  The tr_* names aren't the most elegant, though now they are
   at least just attributes of a class so not really very exposed.
 
 - Think about the best way to support dynamic things: automagic, autocall,
   macros, etc.
 
 - Think of a better heuristic for the application of the transforms in
   IPythonInputSplitter.push() than looking at the buffer ending in ':'.  Idea:
   track indentation change events (indent, dedent, nothing) and apply them only
   if the indentation went up, but not otherwise.
 
 - Think of the cleanest way for supporting user-specified transformations (the
   user prefilters we had before).
 
 Authors
 -------
 
 * Fernando Perez
 * Brian Granger
 """
 #-----------------------------------------------------------------------------
 #  Copyright (C) 2010  The IPython Development Team
 #
 #  Distributed under the terms of the BSD License.  The full license is in
 #  the file COPYING, distributed as part of this software.
 #-----------------------------------------------------------------------------
 
 #-----------------------------------------------------------------------------
 # Imports
 #-----------------------------------------------------------------------------
 # stdlib
 import ast
 import codeop
 import re
 import sys
 
 # IPython modules
 from IPython.utils.py3compat import cast_unicode
 from IPython.core.inputtransformer import (leading_indent,
                                            classic_prompt,
                                            ipy_prompt,
                                            strip_encoding_cookie,
                                            cellmagic,
                                            assemble_logical_lines,
                                            help_end,
                                            escaped_commands,
                                            assign_from_magic,
                                            assign_from_system,
                                            assemble_python_lines,
                                            )
 
 # These are available in this module for backwards compatibility.
 from IPython.core.inputtransformer import (ESC_SHELL, ESC_SH_CAP, ESC_HELP,
                                         ESC_HELP2, ESC_MAGIC, ESC_MAGIC2,
                                         ESC_QUOTE, ESC_QUOTE2, ESC_PAREN, ESC_SEQUENCES)
 
 #-----------------------------------------------------------------------------
 # Utilities
 #-----------------------------------------------------------------------------
 
 # FIXME: These are general-purpose utilities that later can be moved to the
 # general ward.  Kept here for now because we're being very strict about test
 # coverage with this code, and this lets us ensure that we keep 100% coverage
 # while developing.
 
 # compiled regexps for autoindent management
 dedent_re = re.compile('|'.join([
     r'^\s+raise(\s.*)?$', # raise statement (+ space + other stuff, maybe)
     r'^\s+raise\([^\)]*\).*$', # wacky raise with immediate open paren
     r'^\s+return(\s.*)?$', # normal return (+ space + other stuff, maybe)
     r'^\s+return\([^\)]*\).*$', # wacky return with immediate open paren
     r'^\s+pass\s*$', # pass (optionally followed by trailing spaces)
     r'^\s+break\s*$', # break (optionally followed by trailing spaces)
     r'^\s+continue\s*$', # continue (optionally followed by trailing spaces)
 ]))
 ini_spaces_re = re.compile(r'^([ \t\r\f\v]+)')
 
 # regexp to match pure comment lines so we don't accidentally insert 'if 1:'
 # before pure comments
 comment_line_re = re.compile('^\s*\#')
 
 
 def num_ini_spaces(s):
     """Return the number of initial spaces in a string.
 
     Note that tabs are counted as a single space.  For now, we do *not* support
     mixing of tabs and spaces in the user's input.
 
     Parameters
     ----------
     s : string
 
     Returns
     -------
     n : int
     """
 
     ini_spaces = ini_spaces_re.match(s)
     if ini_spaces:
         return ini_spaces.end()
     else:
         return 0
 
 def last_blank(src):
     """Determine if the input source ends in a blank.
 
     A blank is either a newline or a line consisting of whitespace.
 
     Parameters
     ----------
     src : string
       A single or multiline string.
     """
     if not src: return False
     ll  = src.splitlines()[-1]
     return (ll == '') or ll.isspace()
 
 
 last_two_blanks_re = re.compile(r'\n\s*\n\s*$', re.MULTILINE)
 last_two_blanks_re2 = re.compile(r'.+\n\s*\n\s+$', re.MULTILINE)
 
 def last_two_blanks(src):
     """Determine if the input source ends in two blanks.
 
     A blank is either a newline or a line consisting of whitespace.
 
     Parameters
     ----------
     src : string
       A single or multiline string.
     """
     if not src: return False
     # The logic here is tricky: I couldn't get a regexp to work and pass all
     # the tests, so I took a different approach: split the source by lines,
     # grab the last two and prepend '###\n' as a stand-in for whatever was in
     # the body before the last two lines.  Then, with that structure, it's
     # possible to analyze with two regexps.  Not the most elegant solution, but
     # it works.  If anyone tries to change this logic, make sure to validate
     # the whole test suite first!
     new_src = '\n'.join(['###\n'] + src.splitlines()[-2:])
     return (bool(last_two_blanks_re.match(new_src)) or
             bool(last_two_blanks_re2.match(new_src)) )
 
 
 def remove_comments(src):
     """Remove all comments from input source.
 
     Note: comments are NOT recognized inside of strings!
 
     Parameters
     ----------
     src : string
       A single or multiline input string.
 
     Returns
     -------
     String with all Python comments removed.
     """
 
     return re.sub('#.*', '', src)
 
 
 def get_input_encoding():
     """Return the default standard input encoding.
 
     If sys.stdin has no encoding, 'ascii' is returned."""
     # There are strange environments for which sys.stdin.encoding is None. We
     # ensure that a valid encoding is returned.
     encoding = getattr(sys.stdin, 'encoding', None)
     if encoding is None:
         encoding = 'ascii'
     return encoding
 
 #-----------------------------------------------------------------------------
 # Classes and functions for normal Python syntax handling
 #-----------------------------------------------------------------------------
 
 class InputSplitter(object):
-    """An object that can accumulate lines of Python source before execution.
+    r"""An object that can accumulate lines of Python source before execution.
 
     This object is designed to be fed python source line-by-line, using
-       :meth:`push`. It will return on each push whether the currently pushed
-       code could be executed already. In addition, it provides a method called
-       :meth:`push_accepts_more` that can be used to query whether more input
-       can be pushed into a single interactive block.
+    :meth:`push`. It will return on each push whether the currently pushed
+    code could be executed already. In addition, it provides a method called
+    :meth:`push_accepts_more` that can be used to query whether more input
+    can be pushed into a single interactive block.
 
     This is a simple example of how an interactive terminal-based client can use
     this tool::
 
         isp = InputSplitter()
         while isp.push_accepts_more():
             indent = ' '*isp.indent_spaces
             prompt = '>>> ' + indent
             line = indent + raw_input(prompt)
             isp.push(line)
         print 'Input source was:\n', isp.source_reset(),
     """
     # Number of spaces of indentation computed from input that has been pushed
     # so far.  This is the attributes callers should query to get the current
     # indentation level, in order to provide auto-indent facilities.
     indent_spaces = 0
     # String, indicating the default input encoding.  It is computed by default
     # at initialization time via get_input_encoding(), but it can be reset by a
     # client with specific knowledge of the encoding.
     encoding = ''
     # String where the current full source input is stored, properly encoded.
     # Reading this attribute is the normal way of querying the currently pushed
     # source code, that has been properly encoded.
     source = ''
     # Code object corresponding to the current source.  It is automatically
     # synced to the source, so it can be queried at any time to obtain the code
     # object; it will be None if the source doesn't compile to valid Python.
     code = None
 
     # Private attributes
 
     # List with lines of input accumulated so far
     _buffer = None
     # Command compiler
     _compile = None
     # Mark when input has changed indentation all the way back to flush-left
     _full_dedent = False
     # Boolean indicating whether the current block is complete
     _is_complete = None
 
     def __init__(self):
         """Create a new InputSplitter instance.
         """
         self._buffer = []
         self._compile = codeop.CommandCompiler()
         self.encoding = get_input_encoding()
 
     def reset(self):
         """Reset the input buffer and associated state."""
         self.indent_spaces = 0
         self._buffer[:] = []
         self.source = ''
         self.code = None
         self._is_complete = False
         self._full_dedent = False
 
     def source_reset(self):
         """Return the input source and perform a full reset.
         """
         out = self.source
         self.reset()
         return out
 
     def push(self, lines):
         """Push one or more lines of input.
 
         This stores the given lines and returns a status code indicating
         whether the code forms a complete Python block or not.
 
         Any exceptions generated in compilation are swallowed, but if an
         exception was produced, the method returns True.
 
         Parameters
         ----------
         lines : string
           One or more lines of Python input.
 
         Returns
         -------
         is_complete : boolean
           True if the current input source (the result of the current input
           plus prior inputs) forms a complete Python execution block.  Note that
           this value is also stored as a private attribute (``_is_complete``), so it
           can be queried at any time.
         """
         self._store(lines)
         source = self.source
 
         # Before calling _compile(), reset the code object to None so that if an
         # exception is raised in compilation, we don't mislead by having
         # inconsistent code/source attributes.
         self.code, self._is_complete = None, None
 
         # Honor termination lines properly
         if source.endswith('\\\n'):
             return False
 
         self._update_indent(lines)
         try:
             self.code = self._compile(source, symbol="exec")
         # Invalid syntax can produce any of a number of different errors from
         # inside the compiler, so we have to catch them all.  Syntax errors
         # immediately produce a 'ready' block, so the invalid Python can be
         # sent to the kernel for evaluation with possible ipython
         # special-syntax conversion.
         except (SyntaxError, OverflowError, ValueError, TypeError,
                 MemoryError):
             self._is_complete = True
         else:
             # Compilation didn't produce any exceptions (though it may not have
             # given a complete code object)
             self._is_complete = self.code is not None
 
         return self._is_complete
 
     def push_accepts_more(self):
         """Return whether a block of interactive input can accept more input.
 
         This method is meant to be used by line-oriented frontends, who need to
         guess whether a block is complete or not based solely on prior and
         current input lines.  The InputSplitter considers it has a complete
         interactive block and will not accept more input when either:
         
         * A SyntaxError is raised
 
         * The code is complete and consists of a single line or a single
           non-compound statement
 
         * The code is complete and has a blank line at the end
 
         If the current input produces a syntax error, this method immediately
         returns False but does *not* raise the syntax error exception, as
         typically clients will want to send invalid syntax to an execution
         backend which might convert the invalid syntax into valid Python via
         one of the dynamic IPython mechanisms.
         """
 
         # With incomplete input, unconditionally accept more
         # A syntax error also sets _is_complete to True - see push()
         if not self._is_complete:
             #print("Not complete")  # debug
             return True
         
         # The user can make any (complete) input execute by leaving a blank line
         last_line = self.source.splitlines()[-1]
         if (not last_line) or last_line.isspace():
             #print("Blank line")  # debug
             return False
         
         # If there's just a single line or AST node, and we're flush left, as is
         # the case after a simple statement such as 'a=1', we want to execute it
         # straight away.
         if self.indent_spaces==0:
             if len(self.source.splitlines()) <= 1:
                 return False
             
             try:
                 code_ast = ast.parse(u''.join(self._buffer))
             except Exception:
                 #print("Can't parse AST")  # debug
                 return False
             else:
                 if len(code_ast.body) == 1 and \
                                     not hasattr(code_ast.body[0], 'body'):
                     #print("Simple statement")  # debug
                     return False
 
         # General fallback - accept more code
         return True
 
     #------------------------------------------------------------------------
     # Private interface
     #------------------------------------------------------------------------
 
     def _find_indent(self, line):
         """Compute the new indentation level for a single line.
 
         Parameters
         ----------
         line : str
           A single new line of non-whitespace, non-comment Python input.
 
         Returns
         -------
         indent_spaces : int
           New value for the indent level (it may be equal to self.indent_spaces
         if indentation doesn't change.
 
         full_dedent : boolean
           Whether the new line causes a full flush-left dedent.
         """
         indent_spaces = self.indent_spaces
         full_dedent = self._full_dedent
 
         inisp = num_ini_spaces(line)
         if inisp < indent_spaces:
             indent_spaces = inisp
             if indent_spaces <= 0:
                 #print 'Full dedent in text',self.source # dbg
                 full_dedent = True
 
         if line.rstrip()[-1] == ':':
             indent_spaces += 4
         elif dedent_re.match(line):
             indent_spaces -= 4
             if indent_spaces <= 0:
                 full_dedent = True
 
         # Safety
         if indent_spaces < 0:
             indent_spaces = 0
             #print 'safety' # dbg
 
         return indent_spaces, full_dedent
 
     def _update_indent(self, lines):
         for line in remove_comments(lines).splitlines():
             if line and not line.isspace():
                 self.indent_spaces, self._full_dedent = self._find_indent(line)
 
     def _store(self, lines, buffer=None, store='source'):
         """Store one or more lines of input.
 
         If input lines are not newline-terminated, a newline is automatically
         appended."""
 
         if buffer is None:
             buffer = self._buffer
 
         if lines.endswith('\n'):
             buffer.append(lines)
         else:
             buffer.append(lines+'\n')
         setattr(self, store, self._set_source(buffer))
 
     def _set_source(self, buffer):
         return u''.join(buffer)
 
 
 class IPythonInputSplitter(InputSplitter):
     """An input splitter that recognizes all of IPython's special syntax."""
 
     # String with raw, untransformed input.
     source_raw = ''
     
     # Flag to track when a transformer has stored input that it hasn't given
     # back yet.
     transformer_accumulating = False
     
     # Flag to track when assemble_python_lines has stored input that it hasn't
     # given back yet.
     within_python_line = False
 
     # Private attributes
 
     # List with lines of raw input accumulated so far.
     _buffer_raw = None
 
     def __init__(self, line_input_checker=True, physical_line_transforms=None,
                     logical_line_transforms=None, python_line_transforms=None):
         super(IPythonInputSplitter, self).__init__()
         self._buffer_raw = []
         self._validate = True
         
         if physical_line_transforms is not None:
             self.physical_line_transforms = physical_line_transforms
         else:
             self.physical_line_transforms = [
                                              leading_indent(),
                                              classic_prompt(),
                                              ipy_prompt(),
                                              strip_encoding_cookie(),
                                              cellmagic(end_on_blank_line=line_input_checker),
                                             ]
         
         self.assemble_logical_lines = assemble_logical_lines()
         if logical_line_transforms is not None:
             self.logical_line_transforms = logical_line_transforms
         else:
             self.logical_line_transforms = [
                                             help_end(),
                                             escaped_commands(),
                                             assign_from_magic(),
                                             assign_from_system(),
                                            ]
         
         self.assemble_python_lines = assemble_python_lines()
         if python_line_transforms is not None:
             self.python_line_transforms = python_line_transforms
         else:
             # We don't use any of these at present
             self.python_line_transforms = []
     
     @property
     def transforms(self):
         "Quick access to all transformers."
         return self.physical_line_transforms + \
             [self.assemble_logical_lines] + self.logical_line_transforms + \
             [self.assemble_python_lines]  + self.python_line_transforms
     
     @property
     def transforms_in_use(self):
         """Transformers, excluding logical line transformers if we're in a
         Python line."""
         t = self.physical_line_transforms[:]
         if not self.within_python_line:
             t += [self.assemble_logical_lines] + self.logical_line_transforms
         return t + [self.assemble_python_lines] + self.python_line_transforms
 
     def reset(self):
         """Reset the input buffer and associated state."""
         super(IPythonInputSplitter, self).reset()
         self._buffer_raw[:] = []
         self.source_raw = ''
         self.transformer_accumulating = False
         self.within_python_line = False
         for t in self.transforms:
             t.reset()
     
     def flush_transformers(self):
         def _flush(transform, out):
             if out is not None:
                 tmp = transform.push(out)
                 return tmp or transform.reset() or None
             else:
                 return transform.reset() or None
         
         out = None
         for t in self.transforms_in_use:
             out = _flush(t, out)
         
         if out is not None:
             self._store(out)
 
     def source_raw_reset(self):
         """Return input and raw source and perform a full reset.
         """
         self.flush_transformers()
         out = self.source
         out_r = self.source_raw
         self.reset()
         return out, out_r
     
     def source_reset(self):
         self.flush_transformers()
         return super(IPythonInputSplitter, self).source_reset()
 
     def push_accepts_more(self):
         if self.transformer_accumulating:
             return True
         else:
             return super(IPythonInputSplitter, self).push_accepts_more()
 
     def transform_cell(self, cell):
         """Process and translate a cell of input.
         """
         self.reset()
         self.push(cell)
         return self.source_reset()
 
     def push(self, lines):
         """Push one or more lines of IPython input.
 
         This stores the given lines and returns a status code indicating
         whether the code forms a complete Python block or not, after processing
         all input lines for special IPython syntax.
 
         Any exceptions generated in compilation are swallowed, but if an
         exception was produced, the method returns True.
 
         Parameters
         ----------
         lines : string
           One or more lines of Python input.
 
         Returns
         -------
         is_complete : boolean
           True if the current input source (the result of the current input
         plus prior inputs) forms a complete Python execution block.  Note that
         this value is also stored as a private attribute (_is_complete), so it
         can be queried at any time.
         """
 
         # We must ensure all input is pure unicode
         lines = cast_unicode(lines, self.encoding)
         
         # ''.splitlines() --> [], but we need to push the empty line to transformers
         lines_list = lines.splitlines()
         if not lines_list:
             lines_list = ['']
 
         # Store raw source before applying any transformations to it.  Note
         # that this must be done *after* the reset() call that would otherwise
         # flush the buffer.
         self._store(lines, self._buffer_raw, 'source_raw')
 
         for line in lines_list:
             out = self.push_line(line)
 
         return out
     
     def push_line(self, line):
         buf = self._buffer
         
         def _accumulating(dbg):
             #print(dbg)
             self.transformer_accumulating = True
             return False
         
         for transformer in self.physical_line_transforms:
             line = transformer.push(line)
             if line is None:
                 return _accumulating(transformer)
         
         if not self.within_python_line:
             line = self.assemble_logical_lines.push(line)
             if line is None:
                 return _accumulating('acc logical line')        
         
             for transformer in self.logical_line_transforms:
                 line = transformer.push(line)
                 if line is None:
                     return _accumulating(transformer)
         
         line = self.assemble_python_lines.push(line)
         if line is None:
             self.within_python_line = True
             return _accumulating('acc python line')
         else:
             self.within_python_line = False
         
         for transformer in self.python_line_transforms:
             line = transformer.push(line)
             if line is None:
                 return _accumulating(transformer)
 
         #print("transformers clear") #debug
         self.transformer_accumulating = False
         return super(IPythonInputSplitter, self).push(line)

IPython/core/interactiveshell.py

@@ -1,3170 +1,3172 b''
 # -*- coding: utf-8 -*-
 """Main IPython class."""
 
 #-----------------------------------------------------------------------------
 #  Copyright (C) 2001 Janko Hauser <[e-mail]>
 #  Copyright (C) 2001-2007 Fernando Perez. <[e-mail]>
 #  Copyright (C) 2008-2011  The IPython Development Team
 #
 #  Distributed under the terms of the BSD License.  The full license is in
 #  the file COPYING, distributed as part of this software.
 #-----------------------------------------------------------------------------
 
 #-----------------------------------------------------------------------------
 # Imports
 #-----------------------------------------------------------------------------
 
 from __future__ import absolute_import
 from __future__ import print_function
 
 import __future__
 import abc
 import ast
 import atexit
 import functools
 import os
 import re
 import runpy
 import sys
 import tempfile
 import types
 import subprocess
 from io import open as io_open
 
 from IPython.config.configurable import SingletonConfigurable
 from IPython.core import debugger, oinspect
 from IPython.core import magic
 from IPython.core import page
 from IPython.core import prefilter
 from IPython.core import shadowns
 from IPython.core import ultratb
 from IPython.core.alias import AliasManager, AliasError
 from IPython.core.autocall import ExitAutocall
 from IPython.core.builtin_trap import BuiltinTrap
 from IPython.core.compilerop import CachingCompiler, check_linecache_ipython
 from IPython.core.display_trap import DisplayTrap
 from IPython.core.displayhook import DisplayHook
 from IPython.core.displaypub import DisplayPublisher
 from IPython.core.error import UsageError
 from IPython.core.extensions import ExtensionManager
 from IPython.core.formatters import DisplayFormatter
 from IPython.core.history import HistoryManager
 from IPython.core.inputsplitter import IPythonInputSplitter, ESC_MAGIC, ESC_MAGIC2
 from IPython.core.logger import Logger
 from IPython.core.macro import Macro
 from IPython.core.payload import PayloadManager
 from IPython.core.prefilter import PrefilterManager
 from IPython.core.profiledir import ProfileDir
 from IPython.core.prompts import PromptManager
 from IPython.lib.latextools import LaTeXTool
 from IPython.testing.skipdoctest import skip_doctest
 from IPython.utils import PyColorize
 from IPython.utils import io
 from IPython.utils import py3compat
 from IPython.utils import openpy
 from IPython.utils.decorators import undoc
 from IPython.utils.io import ask_yes_no
 from IPython.utils.ipstruct import Struct
 from IPython.utils.path import get_home_dir, get_ipython_dir, get_py_filename, unquote_filename
 from IPython.utils.pickleshare import PickleShareDB
 from IPython.utils.process import system, getoutput
 from IPython.utils.py3compat import (builtin_mod, unicode_type, string_types,
                                      with_metaclass, iteritems)
 from IPython.utils.strdispatch import StrDispatch
 from IPython.utils.syspathcontext import prepended_to_syspath
 from IPython.utils.text import (format_screen, LSString, SList,
                                 DollarFormatter)
 from IPython.utils.traitlets import (Integer, CBool, CaselessStrEnum, Enum,
                                      List, Unicode, Instance, Type)
 from IPython.utils.warn import warn, error
 import IPython.core.hooks
 
 #-----------------------------------------------------------------------------
 # Globals
 #-----------------------------------------------------------------------------
 
 # compiled regexps for autoindent management
 dedent_re = re.compile(r'^\s+raise|^\s+return|^\s+pass')
 
 #-----------------------------------------------------------------------------
 # Utilities
 #-----------------------------------------------------------------------------
 
 @undoc
 def softspace(file, newvalue):
     """Copied from code.py, to remove the dependency"""
 
     oldvalue = 0
     try:
         oldvalue = file.softspace
     except AttributeError:
         pass
     try:
         file.softspace = newvalue
     except (AttributeError, TypeError):
         # "attribute-less object" or "read-only attributes"
         pass
     return oldvalue
 
 @undoc
 def no_op(*a, **kw): pass
 
 @undoc
 class NoOpContext(object):
     def __enter__(self): pass
     def __exit__(self, type, value, traceback): pass
 no_op_context = NoOpContext()
 
 class SpaceInInput(Exception): pass
 
 @undoc
 class Bunch: pass
 
 
 def get_default_colors():
     if sys.platform=='darwin':
         return "LightBG"
     elif os.name=='nt':
         return 'Linux'
     else:
         return 'Linux'
 
 
 class SeparateUnicode(Unicode):
-    """A Unicode subclass to validate separate_in, separate_out, etc.
+    r"""A Unicode subclass to validate separate_in, separate_out, etc.
 
-    This is a Unicode based trait that converts '0'->'' and '\\n'->'\n'.
+    This is a Unicode based trait that converts '0'->'' and ``'\\n'->'\n'``.
     """
 
     def validate(self, obj, value):
         if value == '0': value = ''
         value = value.replace('\\n','\n')
         return super(SeparateUnicode, self).validate(obj, value)
 
 
 class ReadlineNoRecord(object):
     """Context manager to execute some code, then reload readline history
     so that interactive input to the code doesn't appear when pressing up."""
     def __init__(self, shell):
         self.shell = shell
         self._nested_level = 0
 
     def __enter__(self):
         if self._nested_level == 0:
             try:
                 self.orig_length = self.current_length()
                 self.readline_tail = self.get_readline_tail()
             except (AttributeError, IndexError):   # Can fail with pyreadline
                 self.orig_length, self.readline_tail = 999999, []
         self._nested_level += 1
 
     def __exit__(self, type, value, traceback):
         self._nested_level -= 1
         if self._nested_level == 0:
             # Try clipping the end if it's got longer
             try:
                 e = self.current_length() - self.orig_length
                 if e > 0:
                     for _ in range(e):
                         self.shell.readline.remove_history_item(self.orig_length)
 
                 # If it still doesn't match, just reload readline history.
                 if self.current_length() != self.orig_length \
                     or self.get_readline_tail() != self.readline_tail:
                     self.shell.refill_readline_hist()
             except (AttributeError, IndexError):
                 pass
         # Returning False will cause exceptions to propagate
         return False
 
     def current_length(self):
         return self.shell.readline.get_current_history_length()
 
     def get_readline_tail(self, n=10):
         """Get the last n items in readline history."""
         end = self.shell.readline.get_current_history_length() + 1
         start = max(end-n, 1)
         ghi = self.shell.readline.get_history_item
         return [ghi(x) for x in range(start, end)]
 
 
 @undoc
 class DummyMod(object):
     """A dummy module used for IPython's interactive module when
     a namespace must be assigned to the module's __dict__."""
     pass
 
 #-----------------------------------------------------------------------------
 # Main IPython class
 #-----------------------------------------------------------------------------
 
 class InteractiveShell(SingletonConfigurable):
     """An enhanced, interactive shell for Python."""
 
     _instance = None
     
     ast_transformers = List([], config=True, help=
         """
         A list of ast.NodeTransformer subclass instances, which will be applied
         to user input before code is run.
         """
     )
 
     autocall = Enum((0,1,2), default_value=0, config=True, help=
         """
         Make IPython automatically call any callable object even if you didn't
         type explicit parentheses. For example, 'str 43' becomes 'str(43)'
         automatically. The value can be '0' to disable the feature, '1' for
         'smart' autocall, where it is not applied if there are no more
         arguments on the line, and '2' for 'full' autocall, where all callable
         objects are automatically called (even if no arguments are present).
         """
     )
     # TODO: remove all autoindent logic and put into frontends.
     # We can't do this yet because even runlines uses the autoindent.
     autoindent = CBool(True, config=True, help=
         """
         Autoindent IPython code entered interactively.
         """
     )
     automagic = CBool(True, config=True, help=
         """
         Enable magic commands to be called without the leading %.
         """
     )
     cache_size = Integer(1000, config=True, help=
         """
         Set the size of the output cache.  The default is 1000, you can
         change it permanently in your config file.  Setting it to 0 completely
         disables the caching system, and the minimum value accepted is 20 (if
         you provide a value less than 20, it is reset to 0 and a warning is
         issued).  This limit is defined because otherwise you'll spend more
         time re-flushing a too small cache than working
         """
     )
     color_info = CBool(True, config=True, help=
         """
         Use colors for displaying information about objects. Because this
         information is passed through a pager (like 'less'), and some pagers
         get confused with color codes, this capability can be turned off.
         """
     )
     colors = CaselessStrEnum(('NoColor','LightBG','Linux'),
                              default_value=get_default_colors(), config=True,
         help="Set the color scheme (NoColor, Linux, or LightBG)."
     )
     colors_force = CBool(False, help=
         """
         Force use of ANSI color codes, regardless of OS and readline
         availability.
         """
         # FIXME: This is essentially a hack to allow ZMQShell to show colors
         # without readline on Win32. When the ZMQ formatting system is
         # refactored, this should be removed.
     )
     debug = CBool(False, config=True)
     deep_reload = CBool(False, config=True, help=
         """
         Enable deep (recursive) reloading by default. IPython can use the
         deep_reload module which reloads changes in modules recursively (it
         replaces the reload() function, so you don't need to change anything to
         use it). deep_reload() forces a full reload of modules whose code may
         have changed, which the default reload() function does not.  When
         deep_reload is off, IPython will use the normal reload(), but
         deep_reload will still be available as dreload().
         """
     )
     disable_failing_post_execute = CBool(False, config=True,
         help="Don't call post-execute functions that have failed in the past."
     )
     display_formatter = Instance(DisplayFormatter)
     displayhook_class = Type(DisplayHook)
     display_pub_class = Type(DisplayPublisher)
     data_pub_class = None
 
     exit_now = CBool(False)
     exiter = Instance(ExitAutocall)
     def _exiter_default(self):
         return ExitAutocall(self)
     # Monotonically increasing execution counter
     execution_count = Integer(1)
     filename = Unicode("<ipython console>")
     ipython_dir= Unicode('', config=True) # Set to get_ipython_dir() in __init__
 
     # Input splitter, to transform input line by line and detect when a block
     # is ready to be executed.
     input_splitter = Instance('IPython.core.inputsplitter.IPythonInputSplitter',
                               (), {'line_input_checker': True})
     
     # This InputSplitter instance is used to transform completed cells before
     # running them. It allows cell magics to contain blank lines.
     input_transformer_manager = Instance('IPython.core.inputsplitter.IPythonInputSplitter',
                                          (), {'line_input_checker': False})
     
     logstart = CBool(False, config=True, help=
         """
         Start logging to the default log file.
         """
     )
     logfile = Unicode('', config=True, help=
         """
         The name of the logfile to use.
         """
     )
     logappend = Unicode('', config=True, help=
         """
         Start logging to the given file in append mode.
         """
     )
     object_info_string_level = Enum((0,1,2), default_value=0,
                                     config=True)
     pdb = CBool(False, config=True, help=
         """
         Automatically call the pdb debugger after every exception.
         """
     )
     multiline_history = CBool(sys.platform != 'win32', config=True,
         help="Save multi-line entries as one entry in readline history"
     )
 
     # deprecated prompt traits:
     
     prompt_in1 = Unicode('In [\\#]: ', config=True,
         help="Deprecated, use PromptManager.in_template")
     prompt_in2 = Unicode('   .\\D.: ', config=True,
         help="Deprecated, use PromptManager.in2_template")
     prompt_out = Unicode('Out[\\#]: ', config=True,
         help="Deprecated, use PromptManager.out_template")
     prompts_pad_left = CBool(True, config=True,
         help="Deprecated, use PromptManager.justify")
     
     def _prompt_trait_changed(self, name, old, new):
         table = {
             'prompt_in1' : 'in_template',
             'prompt_in2' : 'in2_template',
             'prompt_out' : 'out_template',
             'prompts_pad_left' : 'justify',
         }
         warn("InteractiveShell.{name} is deprecated, use PromptManager.{newname}".format(
                 name=name, newname=table[name])
         )
         # protect against weird cases where self.config may not exist:
         if self.config is not None:
             # propagate to corresponding PromptManager trait
             setattr(self.config.PromptManager, table[name], new)
     
     _prompt_in1_changed = _prompt_trait_changed
     _prompt_in2_changed = _prompt_trait_changed
     _prompt_out_changed = _prompt_trait_changed
     _prompt_pad_left_changed = _prompt_trait_changed
     
     show_rewritten_input = CBool(True, config=True,
         help="Show rewritten input, e.g. for autocall."
     )
     
     quiet = CBool(False, config=True)
 
     history_length = Integer(10000, config=True)
 
     # The readline stuff will eventually be moved to the terminal subclass
     # but for now, we can't do that as readline is welded in everywhere.
     readline_use = CBool(True, config=True)
     readline_remove_delims = Unicode('-/~', config=True)
     readline_delims = Unicode() # set by init_readline()
     # don't use \M- bindings by default, because they
     # conflict with 8-bit encodings. See gh-58,gh-88
     readline_parse_and_bind = List([
             'tab: complete',
             '"\C-l": clear-screen',
             'set show-all-if-ambiguous on',
             '"\C-o": tab-insert',
             '"\C-r": reverse-search-history',
             '"\C-s": forward-search-history',
             '"\C-p": history-search-backward',
             '"\C-n": history-search-forward',
             '"\e[A": history-search-backward',
             '"\e[B": history-search-forward',
             '"\C-k": kill-line',
             '"\C-u": unix-line-discard',
         ], allow_none=False, config=True)
 
     ast_node_interactivity = Enum(['all', 'last', 'last_expr', 'none'],
                                   default_value='last_expr', config=True, 
                                   help="""
         'all', 'last', 'last_expr' or 'none', specifying which nodes should be
         run interactively (displaying output from expressions).""")
 
     # TODO: this part of prompt management should be moved to the frontends.
     # Use custom TraitTypes that convert '0'->'' and '\\n'->'\n'
     separate_in = SeparateUnicode('\n', config=True)
     separate_out = SeparateUnicode('', config=True)
     separate_out2 = SeparateUnicode('', config=True)
     wildcards_case_sensitive = CBool(True, config=True)
     xmode = CaselessStrEnum(('Context','Plain', 'Verbose'),
                             default_value='Context', config=True)
 
     # Subcomponents of InteractiveShell
     alias_manager = Instance('IPython.core.alias.AliasManager')
     prefilter_manager = Instance('IPython.core.prefilter.PrefilterManager')
     builtin_trap = Instance('IPython.core.builtin_trap.BuiltinTrap')
     display_trap = Instance('IPython.core.display_trap.DisplayTrap')
     extension_manager = Instance('IPython.core.extensions.ExtensionManager')
     payload_manager = Instance('IPython.core.payload.PayloadManager')
     history_manager = Instance('IPython.core.history.HistoryManager')
     magics_manager = Instance('IPython.core.magic.MagicsManager')
 
     profile_dir = Instance('IPython.core.application.ProfileDir')
     @property
     def profile(self):
         if self.profile_dir is not None:
             name = os.path.basename(self.profile_dir.location)
             return name.replace('profile_','')
 
 
     # Private interface
     _post_execute = Instance(dict)
 
     # Tracks any GUI loop loaded for pylab
     pylab_gui_select = None
 
     def __init__(self, ipython_dir=None, profile_dir=None,
                  user_module=None, user_ns=None,
                  custom_exceptions=((), None), **kwargs):
 
         # This is where traits with a config_key argument are updated
         # from the values on config.
         super(InteractiveShell, self).__init__(**kwargs)
         self.configurables = [self]
 
         # These are relatively independent and stateless
         self.init_ipython_dir(ipython_dir)
         self.init_profile_dir(profile_dir)
         self.init_instance_attrs()
         self.init_environment()
         
         # Check if we're in a virtualenv, and set up sys.path.
         self.init_virtualenv()
 
         # Create namespaces (user_ns, user_global_ns, etc.)
         self.init_create_namespaces(user_module, user_ns)
         # This has to be done after init_create_namespaces because it uses
         # something in self.user_ns, but before init_sys_modules, which
         # is the first thing to modify sys.
         # TODO: When we override sys.stdout and sys.stderr before this class
         # is created, we are saving the overridden ones here. Not sure if this
         # is what we want to do.
         self.save_sys_module_state()
         self.init_sys_modules()
 
         # While we're trying to have each part of the code directly access what
         # it needs without keeping redundant references to objects, we have too
         # much legacy code that expects ip.db to exist.
         self.db = PickleShareDB(os.path.join(self.profile_dir.location, 'db'))
 
         self.init_history()
         self.init_encoding()
         self.init_prefilter()
 
         self.init_syntax_highlighting()
         self.init_hooks()
         self.init_pushd_popd_magic()
         # self.init_traceback_handlers use to be here, but we moved it below
         # because it and init_io have to come after init_readline.
         self.init_user_ns()
         self.init_logger()
         self.init_builtins()
 
         # The following was in post_config_initialization
         self.init_inspector()
         # init_readline() must come before init_io(), because init_io uses
         # readline related things.
         self.init_readline()
         # We save this here in case user code replaces raw_input, but it needs
         # to be after init_readline(), because PyPy's readline works by replacing
         # raw_input.
         if py3compat.PY3:
             self.raw_input_original = input
         else:
             self.raw_input_original = raw_input
         # init_completer must come after init_readline, because it needs to
         # know whether readline is present or not system-wide to configure the
         # completers, since the completion machinery can now operate
         # independently of readline (e.g. over the network)
         self.init_completer()
         # TODO: init_io() needs to happen before init_traceback handlers
         # because the traceback handlers hardcode the stdout/stderr streams.
         # This logic in in debugger.Pdb and should eventually be changed.
         self.init_io()
         self.init_traceback_handlers(custom_exceptions)
         self.init_prompts()
         self.init_display_formatter()
         self.init_display_pub()
         self.init_data_pub()
         self.init_displayhook()
         self.init_latextool()
         self.init_magics()
         self.init_alias()
         self.init_logstart()
         self.init_pdb()
         self.init_extension_manager()
         self.init_payload()
         self.init_comms()
         self.hooks.late_startup_hook()
         atexit.register(self.atexit_operations)
 
     def get_ipython(self):
         """Return the currently running IPython instance."""
         return self
 
     #-------------------------------------------------------------------------
     # Trait changed handlers
     #-------------------------------------------------------------------------
 
     def _ipython_dir_changed(self, name, new):
         if not os.path.isdir(new):
             os.makedirs(new, mode = 0o777)
 
     def set_autoindent(self,value=None):
         """Set the autoindent flag, checking for readline support.
 
         If called with no arguments, it acts as a toggle."""
 
         if value != 0 and not self.has_readline:
             if os.name == 'posix':
                 warn("The auto-indent feature requires the readline library")
             self.autoindent = 0
             return
         if value is None:
             self.autoindent = not self.autoindent
         else:
             self.autoindent = value
 
     #-------------------------------------------------------------------------
     # init_* methods called by __init__
     #-------------------------------------------------------------------------
 
     def init_ipython_dir(self, ipython_dir):
         if ipython_dir is not None:
             self.ipython_dir = ipython_dir
             return
 
         self.ipython_dir = get_ipython_dir()
 
     def init_profile_dir(self, profile_dir):
         if profile_dir is not None:
             self.profile_dir = profile_dir
             return
         self.profile_dir =\
             ProfileDir.create_profile_dir_by_name(self.ipython_dir, 'default')
 
     def init_instance_attrs(self):
         self.more = False
 
         # command compiler
         self.compile = CachingCompiler()
 
         # Make an empty namespace, which extension writers can rely on both
         # existing and NEVER being used by ipython itself.  This gives them a
         # convenient location for storing additional information and state
         # their extensions may require, without fear of collisions with other
         # ipython names that may develop later.
         self.meta = Struct()
 
         # Temporary files used for various purposes.  Deleted at exit.
         self.tempfiles = []
 
         # Keep track of readline usage (later set by init_readline)
         self.has_readline = False
 
         # keep track of where we started running (mainly for crash post-mortem)
         # This is not being used anywhere currently.
         self.starting_dir = py3compat.getcwd()
 
         # Indentation management
         self.indent_current_nsp = 0
 
         # Dict to track post-execution functions that have been registered
         self._post_execute = {}
 
     def init_environment(self):
         """Any changes we need to make to the user's environment."""
         pass
 
     def init_encoding(self):
         # Get system encoding at startup time.  Certain terminals (like Emacs
         # under Win32 have it set to None, and we need to have a known valid
         # encoding to use in the raw_input() method
         try:
             self.stdin_encoding = sys.stdin.encoding or 'ascii'
         except AttributeError:
             self.stdin_encoding = 'ascii'
 
     def init_syntax_highlighting(self):
         # Python source parser/formatter for syntax highlighting
         pyformat = PyColorize.Parser().format
         self.pycolorize = lambda src: pyformat(src,'str',self.colors)
 
     def init_pushd_popd_magic(self):
         # for pushd/popd management
         self.home_dir = get_home_dir()
 
         self.dir_stack = []
 
     def init_logger(self):
         self.logger = Logger(self.home_dir, logfname='ipython_log.py',
                              logmode='rotate')
 
     def init_logstart(self):
         """Initialize logging in case it was requested at the command line.
         """
         if self.logappend:
             self.magic('logstart %s append' % self.logappend)
         elif self.logfile:
             self.magic('logstart %s' % self.logfile)
         elif self.logstart:
             self.magic('logstart')
 
     def init_builtins(self):
         # A single, static flag that we set to True.  Its presence indicates
         # that an IPython shell has been created, and we make no attempts at
         # removing on exit or representing the existence of more than one
         # IPython at a time.
         builtin_mod.__dict__['__IPYTHON__'] = True
 
         # In 0.11 we introduced '__IPYTHON__active' as an integer we'd try to
         # manage on enter/exit, but with all our shells it's virtually
         # impossible to get all the cases right.  We're leaving the name in for
         # those who adapted their codes to check for this flag, but will
         # eventually remove it after a few more releases.
         builtin_mod.__dict__['__IPYTHON__active'] = \
                                           'Deprecated, check for __IPYTHON__'
 
         self.builtin_trap = BuiltinTrap(shell=self)
 
     def init_inspector(self):
         # Object inspector
         self.inspector = oinspect.Inspector(oinspect.InspectColors,
                                             PyColorize.ANSICodeColors,
                                             'NoColor',
                                             self.object_info_string_level)
 
     def init_io(self):
         # This will just use sys.stdout and sys.stderr. If you want to
         # override sys.stdout and sys.stderr themselves, you need to do that
         # *before* instantiating this class, because io holds onto
         # references to the underlying streams.
         if (sys.platform == 'win32' or sys.platform == 'cli') and self.has_readline:
             io.stdout = io.stderr = io.IOStream(self.readline._outputfile)
         else:
             io.stdout = io.IOStream(sys.stdout)
             io.stderr = io.IOStream(sys.stderr)
 
     def init_prompts(self):
         self.prompt_manager = PromptManager(shell=self, parent=self)
         self.configurables.append(self.prompt_manager)
         # Set system prompts, so that scripts can decide if they are running
         # interactively.
         sys.ps1 = 'In : '
         sys.ps2 = '...: '
         sys.ps3 = 'Out: '
 
     def init_display_formatter(self):
         self.display_formatter = DisplayFormatter(parent=self)
         self.configurables.append(self.display_formatter)
 
     def init_display_pub(self):
         self.display_pub = self.display_pub_class(parent=self)
         self.configurables.append(self.display_pub)
 
     def init_data_pub(self):
         if not self.data_pub_class:
             self.data_pub = None
             return
         self.data_pub = self.data_pub_class(parent=self)
         self.configurables.append(self.data_pub)
 
     def init_displayhook(self):
         # Initialize displayhook, set in/out prompts and printing system
         self.displayhook = self.displayhook_class(
             parent=self,
             shell=self,
             cache_size=self.cache_size,
         )
         self.configurables.append(self.displayhook)
         # This is a context manager that installs/revmoes the displayhook at
         # the appropriate time.
         self.display_trap = DisplayTrap(hook=self.displayhook)
 
     def init_latextool(self):
         """Configure LaTeXTool."""
         cfg = LaTeXTool.instance(parent=self)
         if cfg not in self.configurables:
             self.configurables.append(cfg)
 
     def init_virtualenv(self):
         """Add a virtualenv to sys.path so the user can import modules from it.
         This isn't perfect: it doesn't use the Python interpreter with which the
         virtualenv was built, and it ignores the --no-site-packages option. A
         warning will appear suggesting the user installs IPython in the
         virtualenv, but for many cases, it probably works well enough.
         
         Adapted from code snippets online.
         
         http://blog.ufsoft.org/2009/1/29/ipython-and-virtualenv
         """
         if 'VIRTUAL_ENV' not in os.environ:
             # Not in a virtualenv
             return
         
         if os.path.realpath(sys.executable).startswith(
             os.path.realpath(os.environ['VIRTUAL_ENV'])
         ):
             # Running properly in the virtualenv, don't need to do anything
             return
         
         warn("Attempting to work in a virtualenv. If you encounter problems, please "
              "install IPython inside the virtualenv.")
         if sys.platform == "win32":
             virtual_env = os.path.join(os.environ['VIRTUAL_ENV'], 'Lib', 'site-packages') 
         else:
             virtual_env = os.path.join(os.environ['VIRTUAL_ENV'], 'lib',
                        'python%d.%d' % sys.version_info[:2], 'site-packages')
         
         import site
         sys.path.insert(0, virtual_env)
         site.addsitedir(virtual_env)
 
     #-------------------------------------------------------------------------
     # Things related to injections into the sys module
     #-------------------------------------------------------------------------
 
     def save_sys_module_state(self):
         """Save the state of hooks in the sys module.
 
         This has to be called after self.user_module is created.
         """
         self._orig_sys_module_state = {}
         self._orig_sys_module_state['stdin'] = sys.stdin
         self._orig_sys_module_state['stdout'] = sys.stdout
         self._orig_sys_module_state['stderr'] = sys.stderr
         self._orig_sys_module_state['excepthook'] = sys.excepthook
         self._orig_sys_modules_main_name = self.user_module.__name__
         self._orig_sys_modules_main_mod = sys.modules.get(self.user_module.__name__)
 
     def restore_sys_module_state(self):
         """Restore the state of the sys module."""
         try:
             for k, v in iteritems(self._orig_sys_module_state):
                 setattr(sys, k, v)
         except AttributeError:
             pass
         # Reset what what done in self.init_sys_modules
         if self._orig_sys_modules_main_mod is not None:
             sys.modules[self._orig_sys_modules_main_name] = self._orig_sys_modules_main_mod
 
     #-------------------------------------------------------------------------
     # Things related to hooks
     #-------------------------------------------------------------------------
 
     def init_hooks(self):
         # hooks holds pointers used for user-side customizations
         self.hooks = Struct()
 
         self.strdispatchers = {}
 
         # Set all default hooks, defined in the IPython.hooks module.
         hooks = IPython.core.hooks
         for hook_name in hooks.__all__:
             # default hooks have priority 100, i.e. low; user hooks should have
             # 0-100 priority
             self.set_hook(hook_name,getattr(hooks,hook_name), 100)
 
     def set_hook(self,name,hook, priority = 50, str_key = None, re_key = None):
         """set_hook(name,hook) -> sets an internal IPython hook.
 
         IPython exposes some of its internal API as user-modifiable hooks.  By
         adding your function to one of these hooks, you can modify IPython's
         behavior to call at runtime your own routines."""
 
         # At some point in the future, this should validate the hook before it
         # accepts it.  Probably at least check that the hook takes the number
         # of args it's supposed to.
 
         f = types.MethodType(hook,self)
 
         # check if the hook is for strdispatcher first
         if str_key is not None:
             sdp = self.strdispatchers.get(name, StrDispatch())
             sdp.add_s(str_key, f, priority )
             self.strdispatchers[name] = sdp
             return
         if re_key is not None:
             sdp = self.strdispatchers.get(name, StrDispatch())
             sdp.add_re(re.compile(re_key), f, priority )
             self.strdispatchers[name] = sdp
             return
 
         dp = getattr(self.hooks, name, None)
         if name not in IPython.core.hooks.__all__:
             print("Warning! Hook '%s' is not one of %s" % \
                   (name, IPython.core.hooks.__all__ ))
         if not dp:
             dp = IPython.core.hooks.CommandChainDispatcher()
 
         try:
             dp.add(f,priority)
         except AttributeError:
             # it was not commandchain, plain old func - replace
             dp = f
 
         setattr(self.hooks,name, dp)
 
     def register_post_execute(self, func):
         """Register a function for calling after code execution.
         """
         if not callable(func):
             raise ValueError('argument %s must be callable' % func)
         self._post_execute[func] = True
     
     #-------------------------------------------------------------------------
     # Things related to the "main" module
     #-------------------------------------------------------------------------
 
     def new_main_mod(self, filename, modname):
         """Return a new 'main' module object for user code execution.
         
         ``filename`` should be the path of the script which will be run in the
         module. Requests with the same filename will get the same module, with
         its namespace cleared.
         
         ``modname`` should be the module name - normally either '__main__' or
         the basename of the file without the extension.
         
         When scripts are executed via %run, we must keep a reference to their
         __main__ module around so that Python doesn't
         clear it, rendering references to module globals useless.
 
         This method keeps said reference in a private dict, keyed by the
         absolute path of the script. This way, for multiple executions of the
         same script we only keep one copy of the namespace (the last one),
         thus preventing memory leaks from old references while allowing the
         objects from the last execution to be accessible.
         """
         filename = os.path.abspath(filename)
         try:
             main_mod = self._main_mod_cache[filename]
         except KeyError:
             main_mod = self._main_mod_cache[filename] = types.ModuleType(modname,
                         doc="Module created for script run in IPython")
         else:
             main_mod.__dict__.clear()
             main_mod.__name__ = modname
         
         main_mod.__file__ = filename
         # It seems pydoc (and perhaps others) needs any module instance to
         # implement a __nonzero__ method
         main_mod.__nonzero__ = lambda : True
         
         return main_mod
 
     def clear_main_mod_cache(self):
         """Clear the cache of main modules.
 
         Mainly for use by utilities like %reset.
 
         Examples
         --------
 
         In [15]: import IPython
 
         In [16]: m = _ip.new_main_mod(IPython.__file__, 'IPython')
 
         In [17]: len(_ip._main_mod_cache) > 0
         Out[17]: True
 
         In [18]: _ip.clear_main_mod_cache()
 
         In [19]: len(_ip._main_mod_cache) == 0
         Out[19]: True
         """
         self._main_mod_cache.clear()
 
     #-------------------------------------------------------------------------
     # Things related to debugging
     #-------------------------------------------------------------------------
 
     def init_pdb(self):
         # Set calling of pdb on exceptions
         # self.call_pdb is a property
         self.call_pdb = self.pdb
 
     def _get_call_pdb(self):
         return self._call_pdb
 
     def _set_call_pdb(self,val):
 
         if val not in (0,1,False,True):
             raise ValueError('new call_pdb value must be boolean')
 
         # store value in instance
         self._call_pdb = val
 
         # notify the actual exception handlers
         self.InteractiveTB.call_pdb = val
 
     call_pdb = property(_get_call_pdb,_set_call_pdb,None,
                         'Control auto-activation of pdb at exceptions')
 
     def debugger(self,force=False):
         """Call the pydb/pdb debugger.
 
         Keywords:
 
           - force(False): by default, this routine checks the instance call_pdb
             flag and does not actually invoke the debugger if the flag is false.
             The 'force' option forces the debugger to activate even if the flag
             is false.
         """
 
         if not (force or self.call_pdb):
             return
 
         if not hasattr(sys,'last_traceback'):
             error('No traceback has been produced, nothing to debug.')
             return
 
         # use pydb if available
         if debugger.has_pydb:
             from pydb import pm
         else:
             # fallback to our internal debugger
             pm = lambda : self.InteractiveTB.debugger(force=True)
 
         with self.readline_no_record:
             pm()
 
     #-------------------------------------------------------------------------
     # Things related to IPython's various namespaces
     #-------------------------------------------------------------------------
     default_user_namespaces = True
 
     def init_create_namespaces(self, user_module=None, user_ns=None):
         # Create the namespace where the user will operate.  user_ns is
         # normally the only one used, and it is passed to the exec calls as
         # the locals argument.  But we do carry a user_global_ns namespace
         # given as the exec 'globals' argument,  This is useful in embedding
         # situations where the ipython shell opens in a context where the
         # distinction between locals and globals is meaningful.  For
         # non-embedded contexts, it is just the same object as the user_ns dict.
 
         # FIXME. For some strange reason, __builtins__ is showing up at user
         # level as a dict instead of a module. This is a manual fix, but I
         # should really track down where the problem is coming from. Alex
         # Schmolck reported this problem first.
 
         # A useful post by Alex Martelli on this topic:
         # Re: inconsistent value from __builtins__
         # Von: Alex Martelli <[e-mail]>
         # Datum: Freitag 01 Oktober 2004 04:45:34 nachmittags/abends
         # Gruppen: comp.lang.python
 
         # Michael Hohn <[e-mail]> wrote:
         # > >>> print type(builtin_check.get_global_binding('__builtins__'))
         # > <type 'dict'>
         # > >>> print type(__builtins__)
         # > <type 'module'>
         # > Is this difference in return value intentional?
 
         # Well, it's documented that '__builtins__' can be either a dictionary
         # or a module, and it's been that way for a long time. Whether it's
         # intentional (or sensible), I don't know. In any case, the idea is
         # that if you need to access the built-in namespace directly, you
         # should start with "import __builtin__" (note, no 's') which will
         # definitely give you a module. Yeah, it's somewhat confusing:-(.
 
         # These routines return a properly built module and dict as needed by
         # the rest of the code, and can also be used by extension writers to
         # generate properly initialized namespaces.
         if (user_ns is not None) or (user_module is not None):
             self.default_user_namespaces = False
         self.user_module, self.user_ns = self.prepare_user_module(user_module, user_ns)
 
         # A record of hidden variables we have added to the user namespace, so
         # we can list later only variables defined in actual interactive use.
         self.user_ns_hidden = {}
 
         # Now that FakeModule produces a real module, we've run into a nasty
         # problem: after script execution (via %run), the module where the user
         # code ran is deleted.  Now that this object is a true module (needed
         # so docetst and other tools work correctly), the Python module
         # teardown mechanism runs over it, and sets to None every variable
         # present in that module.  Top-level references to objects from the
         # script survive, because the user_ns is updated with them.  However,
         # calling functions defined in the script that use other things from
         # the script will fail, because the function's closure had references
         # to the original objects, which are now all None.  So we must protect
         # these modules from deletion by keeping a cache.
         #
         # To avoid keeping stale modules around (we only need the one from the
         # last run), we use a dict keyed with the full path to the script, so
         # only the last version of the module is held in the cache.  Note,
         # however, that we must cache the module *namespace contents* (their
         # __dict__).  Because if we try to cache the actual modules, old ones
         # (uncached) could be destroyed while still holding references (such as
         # those held by GUI objects that tend to be long-lived)>
         #
         # The %reset command will flush this cache.  See the cache_main_mod()
         # and clear_main_mod_cache() methods for details on use.
 
         # This is the cache used for 'main' namespaces
         self._main_mod_cache = {}
 
         # A table holding all the namespaces IPython deals with, so that
         # introspection facilities can search easily.
         self.ns_table = {'user_global':self.user_module.__dict__,
                          'user_local':self.user_ns,
                          'builtin':builtin_mod.__dict__
                          }
     
     @property
     def user_global_ns(self):
         return self.user_module.__dict__
 
     def prepare_user_module(self, user_module=None, user_ns=None):
         """Prepare the module and namespace in which user code will be run.
         
         When IPython is started normally, both parameters are None: a new module
         is created automatically, and its __dict__ used as the namespace.
         
         If only user_module is provided, its __dict__ is used as the namespace.
         If only user_ns is provided, a dummy module is created, and user_ns
         becomes the global namespace. If both are provided (as they may be
         when embedding), user_ns is the local namespace, and user_module
         provides the global namespace.
 
         Parameters
         ----------
         user_module : module, optional
             The current user module in which IPython is being run. If None,
             a clean module will be created.
         user_ns : dict, optional
             A namespace in which to run interactive commands.
 
         Returns
         -------
         A tuple of user_module and user_ns, each properly initialised.
         """
         if user_module is None and user_ns is not None:
             user_ns.setdefault("__name__", "__main__")
             user_module = DummyMod()
             user_module.__dict__ = user_ns
             
         if user_module is None:
             user_module = types.ModuleType("__main__",
                 doc="Automatically created module for IPython interactive environment")
         
         # We must ensure that __builtin__ (without the final 's') is always
         # available and pointing to the __builtin__ *module*.  For more details:
         # http://mail.python.org/pipermail/python-dev/2001-April/014068.html
         user_module.__dict__.setdefault('__builtin__', builtin_mod)
         user_module.__dict__.setdefault('__builtins__', builtin_mod)
         
         if user_ns is None:
             user_ns = user_module.__dict__
 
         return user_module, user_ns
 
     def init_sys_modules(self):
         # We need to insert into sys.modules something that looks like a
         # module but which accesses the IPython namespace, for shelve and
         # pickle to work interactively. Normally they rely on getting
         # everything out of __main__, but for embedding purposes each IPython
         # instance has its own private namespace, so we can't go shoving
         # everything into __main__.
 
         # note, however, that we should only do this for non-embedded
         # ipythons, which really mimic the __main__.__dict__ with their own
         # namespace.  Embedded instances, on the other hand, should not do
         # this because they need to manage the user local/global namespaces
         # only, but they live within a 'normal' __main__ (meaning, they
         # shouldn't overtake the execution environment of the script they're
         # embedded in).
 
         # This is overridden in the InteractiveShellEmbed subclass to a no-op.
         main_name = self.user_module.__name__
         sys.modules[main_name] = self.user_module
 
     def init_user_ns(self):
         """Initialize all user-visible namespaces to their minimum defaults.
 
         Certain history lists are also initialized here, as they effectively
         act as user namespaces.
 
         Notes
         -----
         All data structures here are only filled in, they are NOT reset by this
         method.  If they were not empty before, data will simply be added to
         therm.
         """
         # This function works in two parts: first we put a few things in
         # user_ns, and we sync that contents into user_ns_hidden so that these
         # initial variables aren't shown by %who.  After the sync, we add the
         # rest of what we *do* want the user to see with %who even on a new
         # session (probably nothing, so theye really only see their own stuff)
 
         # The user dict must *always* have a __builtin__ reference to the
         # Python standard __builtin__ namespace,  which must be imported.
         # This is so that certain operations in prompt evaluation can be
         # reliably executed with builtins.  Note that we can NOT use
         # __builtins__ (note the 's'),  because that can either be a dict or a
         # module, and can even mutate at runtime, depending on the context
         # (Python makes no guarantees on it).  In contrast, __builtin__ is
         # always a module object, though it must be explicitly imported.
 
         # For more details:
         # http://mail.python.org/pipermail/python-dev/2001-April/014068.html
         ns = dict()
         
         # Put 'help' in the user namespace
         try:
             from site import _Helper
             ns['help'] = _Helper()
         except ImportError:
             warn('help() not available - check site.py')
 
         # make global variables for user access to the histories
         ns['_ih'] = self.history_manager.input_hist_parsed
         ns['_oh'] = self.history_manager.output_hist
         ns['_dh'] = self.history_manager.dir_hist
 
         ns['_sh'] = shadowns
 
         # user aliases to input and output histories.  These shouldn't show up
         # in %who, as they can have very large reprs.
         ns['In']  = self.history_manager.input_hist_parsed
         ns['Out'] = self.history_manager.output_hist
 
         # Store myself as the public api!!!
         ns['get_ipython'] = self.get_ipython
         
         ns['exit'] = self.exiter
         ns['quit'] = self.exiter
 
         # Sync what we've added so far to user_ns_hidden so these aren't seen
         # by %who
         self.user_ns_hidden.update(ns)
 
         # Anything put into ns now would show up in %who.  Think twice before
         # putting anything here, as we really want %who to show the user their
         # stuff, not our variables.
 
         # Finally, update the real user's namespace
         self.user_ns.update(ns)
     
     @property
     def all_ns_refs(self):
         """Get a list of references to all the namespace dictionaries in which
         IPython might store a user-created object.
         
         Note that this does not include the displayhook, which also caches
         objects from the output."""
         return [self.user_ns, self.user_global_ns, self.user_ns_hidden] + \
                [m.__dict__ for m in self._main_mod_cache.values()]
 
     def reset(self, new_session=True):
         """Clear all internal namespaces, and attempt to release references to
         user objects.
 
         If new_session is True, a new history session will be opened.
         """
         # Clear histories
         self.history_manager.reset(new_session)
         # Reset counter used to index all histories
         if new_session:
             self.execution_count = 1
 
         # Flush cached output items
         if self.displayhook.do_full_cache:
             self.displayhook.flush()
 
         # The main execution namespaces must be cleared very carefully,
         # skipping the deletion of the builtin-related keys, because doing so
         # would cause errors in many object's __del__ methods.
         if self.user_ns is not self.user_global_ns:
             self.user_ns.clear()
         ns = self.user_global_ns
         drop_keys = set(ns.keys())
         drop_keys.discard('__builtin__')
         drop_keys.discard('__builtins__')
         drop_keys.discard('__name__')
         for k in drop_keys:
             del ns[k]
         
         self.user_ns_hidden.clear()
         
         # Restore the user namespaces to minimal usability
         self.init_user_ns()
 
         # Restore the default and user aliases
         self.alias_manager.clear_aliases()
         self.alias_manager.init_aliases()
 
         # Flush the private list of module references kept for script
         # execution protection
         self.clear_main_mod_cache()
 
     def del_var(self, varname, by_name=False):
         """Delete a variable from the various namespaces, so that, as
         far as possible, we're not keeping any hidden references to it.
 
         Parameters
         ----------
         varname : str
             The name of the variable to delete.
         by_name : bool
             If True, delete variables with the given name in each
             namespace. If False (default), find the variable in the user
             namespace, and delete references to it.
         """
         if varname in ('__builtin__', '__builtins__'):
             raise ValueError("Refusing to delete %s" % varname)
 
         ns_refs = self.all_ns_refs
         
         if by_name:                    # Delete by name
             for ns in ns_refs:
                 try:
                     del ns[varname]
                 except KeyError:
                     pass
         else:                         # Delete by object
             try:
                 obj = self.user_ns[varname]
             except KeyError:
                 raise NameError("name '%s' is not defined" % varname)
             # Also check in output history
             ns_refs.append(self.history_manager.output_hist)
             for ns in ns_refs:
                 to_delete = [n for n, o in iteritems(ns) if o is obj]
                 for name in to_delete:
                     del ns[name]
 
             # displayhook keeps extra references, but not in a dictionary
             for name in ('_', '__', '___'):
                 if getattr(self.displayhook, name) is obj:
                     setattr(self.displayhook, name, None)
 
     def reset_selective(self, regex=None):
         """Clear selective variables from internal namespaces based on a
         specified regular expression.
 
         Parameters
         ----------
         regex : string or compiled pattern, optional
             A regular expression pattern that will be used in searching
             variable names in the users namespaces.
         """
         if regex is not None:
             try:
                 m = re.compile(regex)
             except TypeError:
                 raise TypeError('regex must be a string or compiled pattern')
             # Search for keys in each namespace that match the given regex
             # If a match is found, delete the key/value pair.
             for ns in self.all_ns_refs:
                 for var in ns:
                     if m.search(var):
                         del ns[var]
 
     def push(self, variables, interactive=True):
         """Inject a group of variables into the IPython user namespace.
 
         Parameters
         ----------
         variables : dict, str or list/tuple of str
             The variables to inject into the user's namespace.  If a dict, a
             simple update is done.  If a str, the string is assumed to have
             variable names separated by spaces.  A list/tuple of str can also
             be used to give the variable names.  If just the variable names are
             give (list/tuple/str) then the variable values looked up in the
             callers frame.
         interactive : bool
             If True (default), the variables will be listed with the ``who``
             magic.
         """
         vdict = None
 
         # We need a dict of name/value pairs to do namespace updates.
         if isinstance(variables, dict):
             vdict = variables
         elif isinstance(variables, string_types+(list, tuple)):
             if isinstance(variables, string_types):
                 vlist = variables.split()
             else:
                 vlist = variables
             vdict = {}
             cf = sys._getframe(1)
             for name in vlist:
                 try:
                     vdict[name] = eval(name, cf.f_globals, cf.f_locals)
                 except:
                     print('Could not get variable %s from %s' %
                            (name,cf.f_code.co_name))
         else:
             raise ValueError('variables must be a dict/str/list/tuple')
 
         # Propagate variables to user namespace
         self.user_ns.update(vdict)
 
         # And configure interactive visibility
         user_ns_hidden = self.user_ns_hidden
         if interactive:
             for name in vdict:
                 user_ns_hidden.pop(name, None)
         else:
             user_ns_hidden.update(vdict)
     
     def drop_by_id(self, variables):
         """Remove a dict of variables from the user namespace, if they are the
         same as the values in the dictionary.
         
         This is intended for use by extensions: variables that they've added can
         be taken back out if they are unloaded, without removing any that the
         user has overwritten.
         
         Parameters
         ----------
         variables : dict
           A dictionary mapping object names (as strings) to the objects.
         """
         for name, obj in iteritems(variables):
             if name in self.user_ns and self.user_ns[name] is obj:
                 del self.user_ns[name]
                 self.user_ns_hidden.pop(name, None)
 
     #-------------------------------------------------------------------------
     # Things related to object introspection
     #-------------------------------------------------------------------------
 
     def _ofind(self, oname, namespaces=None):
         """Find an object in the available namespaces.
 
         self._ofind(oname) -> dict with keys: found,obj,ospace,ismagic
 
         Has special code to detect magic functions.
         """
         oname = oname.strip()
         #print '1- oname: <%r>' % oname  # dbg
         if not oname.startswith(ESC_MAGIC) and \
             not oname.startswith(ESC_MAGIC2) and \
             not py3compat.isidentifier(oname, dotted=True):
             return dict(found=False)
 
         alias_ns = None
         if namespaces is None:
             # Namespaces to search in:
             # Put them in a list. The order is important so that we
             # find things in the same order that Python finds them.
             namespaces = [ ('Interactive', self.user_ns),
                            ('Interactive (global)', self.user_global_ns),
                            ('Python builtin', builtin_mod.__dict__),
                            ]
 
         # initialize results to 'null'
         found = False; obj = None;  ospace = None;  ds = None;
         ismagic = False; isalias = False; parent = None
 
         # We need to special-case 'print', which as of python2.6 registers as a
         # function but should only be treated as one if print_function was
         # loaded with a future import.  In this case, just bail.
         if (oname == 'print' and not py3compat.PY3 and not \
             (self.compile.compiler_flags & __future__.CO_FUTURE_PRINT_FUNCTION)):
             return {'found':found, 'obj':obj, 'namespace':ospace,
                     'ismagic':ismagic, 'isalias':isalias, 'parent':parent}
 
         # Look for the given name by splitting it in parts.  If the head is
         # found, then we look for all the remaining parts as members, and only
         # declare success if we can find them all.
         oname_parts = oname.split('.')
         oname_head, oname_rest = oname_parts[0],oname_parts[1:]
         for nsname,ns in namespaces:
             try:
                 obj = ns[oname_head]
             except KeyError:
                 continue
             else:
                 #print 'oname_rest:', oname_rest  # dbg
                 for part in oname_rest:
                     try:
                         parent = obj
                         obj = getattr(obj,part)
                     except:
                         # Blanket except b/c some badly implemented objects
                         # allow __getattr__ to raise exceptions other than
                         # AttributeError, which then crashes IPython.
                         break
                 else:
                     # If we finish the for loop (no break), we got all members
                     found = True
                     ospace = nsname
                     break  # namespace loop
 
         # Try to see if it's magic
         if not found:
             obj = None
             if oname.startswith(ESC_MAGIC2):
                 oname = oname.lstrip(ESC_MAGIC2)
                 obj = self.find_cell_magic(oname)
             elif oname.startswith(ESC_MAGIC):
                 oname = oname.lstrip(ESC_MAGIC)
                 obj = self.find_line_magic(oname)
             else:
                 # search without prefix, so run? will find %run?
                 obj = self.find_line_magic(oname)
                 if obj is None:
                     obj = self.find_cell_magic(oname)
             if obj is not None:
                 found = True
                 ospace = 'IPython internal'
                 ismagic = True
 
         # Last try: special-case some literals like '', [], {}, etc:
         if not found and oname_head in ["''",'""','[]','{}','()']:
             obj = eval(oname_head)
             found = True
             ospace = 'Interactive'
 
         return {'found':found, 'obj':obj, 'namespace':ospace,
                 'ismagic':ismagic, 'isalias':isalias, 'parent':parent}
 
     def _ofind_property(self, oname, info):
         """Second part of object finding, to look for property details."""
         if info.found:
             # Get the docstring of the class property if it exists.
             path = oname.split('.')
             root = '.'.join(path[:-1])
             if info.parent is not None:
                 try:
                     target = getattr(info.parent, '__class__')
                     # The object belongs to a class instance.
                     try:
                         target = getattr(target, path[-1])
                         # The class defines the object.
                         if isinstance(target, property):
                             oname = root + '.__class__.' + path[-1]
                             info = Struct(self._ofind(oname))
                     except AttributeError: pass
                 except AttributeError: pass
 
         # We return either the new info or the unmodified input if the object
         # hadn't been found
         return info
 
     def _object_find(self, oname, namespaces=None):
         """Find an object and return a struct with info about it."""
         inf = Struct(self._ofind(oname, namespaces))
         return Struct(self._ofind_property(oname, inf))
 
     def _inspect(self, meth, oname, namespaces=None, **kw):
         """Generic interface to the inspector system.
 
         This function is meant to be called by pdef, pdoc & friends."""
         info = self._object_find(oname, namespaces)
         if info.found:
             pmethod = getattr(self.inspector, meth)
             formatter = format_screen if info.ismagic else None
             if meth == 'pdoc':
                 pmethod(info.obj, oname, formatter)
             elif meth == 'pinfo':
                 pmethod(info.obj, oname, formatter, info, **kw)
             else:
                 pmethod(info.obj, oname)
         else:
             print('Object `%s` not found.' % oname)
             return 'not found'  # so callers can take other action
 
     def object_inspect(self, oname, detail_level=0):
         with self.builtin_trap:
             info = self._object_find(oname)
             if info.found:
                 return self.inspector.info(info.obj, oname, info=info,
                             detail_level=detail_level
                 )
             else:
                 return oinspect.object_info(name=oname, found=False)
 
     #-------------------------------------------------------------------------
     # Things related to history management
     #-------------------------------------------------------------------------
 
     def init_history(self):
         """Sets up the command history, and starts regular autosaves."""
         self.history_manager = HistoryManager(shell=self, parent=self)
         self.configurables.append(self.history_manager)
 
     #-------------------------------------------------------------------------
     # Things related to exception handling and tracebacks (not debugging)
     #-------------------------------------------------------------------------
 
     def init_traceback_handlers(self, custom_exceptions):
         # Syntax error handler.
         self.SyntaxTB = ultratb.SyntaxTB(color_scheme='NoColor')
 
         # The interactive one is initialized with an offset, meaning we always
         # want to remove the topmost item in the traceback, which is our own
         # internal code. Valid modes: ['Plain','Context','Verbose']
         self.InteractiveTB = ultratb.AutoFormattedTB(mode = 'Plain',
                                                      color_scheme='NoColor',
                                                      tb_offset = 1,
                                    check_cache=check_linecache_ipython)
 
         # The instance will store a pointer to the system-wide exception hook,
         # so that runtime code (such as magics) can access it.  This is because
         # during the read-eval loop, it may get temporarily overwritten.
         self.sys_excepthook = sys.excepthook
 
         # and add any custom exception handlers the user may have specified
         self.set_custom_exc(*custom_exceptions)
 
         # Set the exception mode
         self.InteractiveTB.set_mode(mode=self.xmode)
 
     def set_custom_exc(self, exc_tuple, handler):
         """set_custom_exc(exc_tuple,handler)
 
         Set a custom exception handler, which will be called if any of the
         exceptions in exc_tuple occur in the mainloop (specifically, in the
         run_code() method).
 
         Parameters
         ----------
 
         exc_tuple : tuple of exception classes
             A *tuple* of exception classes, for which to call the defined
             handler.  It is very important that you use a tuple, and NOT A
             LIST here, because of the way Python's except statement works.  If
             you only want to trap a single exception, use a singleton tuple::
 
                 exc_tuple == (MyCustomException,)
 
         handler : callable
             handler must have the following signature::
 
                 def my_handler(self, etype, value, tb, tb_offset=None):
                     ...
                     return structured_traceback
 
             Your handler must return a structured traceback (a list of strings),
             or None.
 
             This will be made into an instance method (via types.MethodType)
             of IPython itself, and it will be called if any of the exceptions
             listed in the exc_tuple are caught. If the handler is None, an
             internal basic one is used, which just prints basic info.
 
             To protect IPython from crashes, if your handler ever raises an
             exception or returns an invalid result, it will be immediately
             disabled.
 
         WARNING: by putting in your own exception handler into IPython's main
         execution loop, you run a very good chance of nasty crashes.  This
         facility should only be used if you really know what you are doing."""
 
         assert type(exc_tuple)==type(()) , \
                "The custom exceptions must be given AS A TUPLE."
 
         def dummy_handler(self,etype,value,tb,tb_offset=None):
             print('*** Simple custom exception handler ***')
             print('Exception type :',etype)
             print('Exception value:',value)
             print('Traceback      :',tb)
             #print 'Source code    :','\n'.join(self.buffer)
         
         def validate_stb(stb):
             """validate structured traceback return type
             
             return type of CustomTB *should* be a list of strings, but allow
             single strings or None, which are harmless.
             
             This function will *always* return a list of strings,
             and will raise a TypeError if stb is inappropriate.
             """
             msg = "CustomTB must return list of strings, not %r" % stb
             if stb is None:
                 return []
             elif isinstance(stb, string_types):
                 return [stb]
             elif not isinstance(stb, list):
                 raise TypeError(msg)
             # it's a list
             for line in stb:
                 # check every element
                 if not isinstance(line, string_types):
                     raise TypeError(msg)
             return stb
 
         if handler is None:
             wrapped = dummy_handler
         else:
             def wrapped(self,etype,value,tb,tb_offset=None):
                 """wrap CustomTB handler, to protect IPython from user code
                 
                 This makes it harder (but not impossible) for custom exception
                 handlers to crash IPython.
                 """
                 try:
                     stb = handler(self,etype,value,tb,tb_offset=tb_offset)
                     return validate_stb(stb)
                 except:
                     # clear custom handler immediately
                     self.set_custom_exc((), None)
                     print("Custom TB Handler failed, unregistering", file=io.stderr)
                     # show the exception in handler first
                     stb = self.InteractiveTB.structured_traceback(*sys.exc_info())
                     print(self.InteractiveTB.stb2text(stb), file=io.stdout)
                     print("The original exception:", file=io.stdout)
                     stb = self.InteractiveTB.structured_traceback(
                                             (etype,value,tb), tb_offset=tb_offset
                     )
                 return stb
 
         self.CustomTB = types.MethodType(wrapped,self)
         self.custom_exceptions = exc_tuple
 
     def excepthook(self, etype, value, tb):
       """One more defense for GUI apps that call sys.excepthook.
 
       GUI frameworks like wxPython trap exceptions and call
       sys.excepthook themselves.  I guess this is a feature that
       enables them to keep running after exceptions that would
       otherwise kill their mainloop. This is a bother for IPython
       which excepts to catch all of the program exceptions with a try:
       except: statement.
 
       Normally, IPython sets sys.excepthook to a CrashHandler instance, so if
       any app directly invokes sys.excepthook, it will look to the user like
       IPython crashed.  In order to work around this, we can disable the
       CrashHandler and replace it with this excepthook instead, which prints a
       regular traceback using our InteractiveTB.  In this fashion, apps which
       call sys.excepthook will generate a regular-looking exception from
       IPython, and the CrashHandler will only be triggered by real IPython
       crashes.
 
       This hook should be used sparingly, only in places which are not likely
       to be true IPython errors.
       """
       self.showtraceback((etype,value,tb),tb_offset=0)
 
     def _get_exc_info(self, exc_tuple=None):
         """get exc_info from a given tuple, sys.exc_info() or sys.last_type etc.
         
         Ensures sys.last_type,value,traceback hold the exc_info we found,
         from whichever source.
         
         raises ValueError if none of these contain any information
         """
         if exc_tuple is None:
             etype, value, tb = sys.exc_info()
         else:
             etype, value, tb = exc_tuple
 
         if etype is None:
             if hasattr(sys, 'last_type'):
                 etype, value, tb = sys.last_type, sys.last_value, \
                                    sys.last_traceback
         
         if etype is None:
             raise ValueError("No exception to find")
         
         # Now store the exception info in sys.last_type etc.
         # WARNING: these variables are somewhat deprecated and not
         # necessarily safe to use in a threaded environment, but tools
         # like pdb depend on their existence, so let's set them.  If we
         # find problems in the field, we'll need to revisit their use.
         sys.last_type = etype
         sys.last_value = value
         sys.last_traceback = tb
         
         return etype, value, tb
     
     def show_usage_error(self, exc):
         """Show a short message for UsageErrors
         
         These are special exceptions that shouldn't show a traceback.
         """
         self.write_err("UsageError: %s" % exc)
     
     def showtraceback(self,exc_tuple = None,filename=None,tb_offset=None,
                       exception_only=False):
         """Display the exception that just occurred.
 
         If nothing is known about the exception, this is the method which
         should be used throughout the code for presenting user tracebacks,
         rather than directly invoking the InteractiveTB object.
 
         A specific showsyntaxerror() also exists, but this method can take
         care of calling it if needed, so unless you are explicitly catching a
         SyntaxError exception, don't try to analyze the stack manually and
         simply call this method."""
 
         try:
             try:
                 etype, value, tb = self._get_exc_info(exc_tuple)
             except ValueError:
                 self.write_err('No traceback available to show.\n')
                 return
             
             if issubclass(etype, SyntaxError):
                 # Though this won't be called by syntax errors in the input
                 # line, there may be SyntaxError cases with imported code.
                 self.showsyntaxerror(filename)
             elif etype is UsageError:
                 self.show_usage_error(value)
             else:
                 if exception_only:
                     stb = ['An exception has occurred, use %tb to see '
                            'the full traceback.\n']
                     stb.extend(self.InteractiveTB.get_exception_only(etype,
                                                                      value))
                 else:
                     try:
                         # Exception classes can customise their traceback - we
                         # use this in IPython.parallel for exceptions occurring
                         # in the engines. This should return a list of strings.
                         stb = value._render_traceback_()
                     except Exception:
                         stb = self.InteractiveTB.structured_traceback(etype,
                                             value, tb, tb_offset=tb_offset)
 
                     self._showtraceback(etype, value, stb)
                     if self.call_pdb:
                         # drop into debugger
                         self.debugger(force=True)
                     return
 
                 # Actually show the traceback
                 self._showtraceback(etype, value, stb)
 
         except KeyboardInterrupt:
             self.write_err("\nKeyboardInterrupt\n")
 
     def _showtraceback(self, etype, evalue, stb):
         """Actually show a traceback.
 
         Subclasses may override this method to put the traceback on a different
         place, like a side channel.
         """
         print(self.InteractiveTB.stb2text(stb), file=io.stdout)
 
     def showsyntaxerror(self, filename=None):
         """Display the syntax error that just occurred.
 
         This doesn't display a stack trace because there isn't one.
 
         If a filename is given, it is stuffed in the exception instead
         of what was there before (because Python's parser always uses
         "<string>" when reading from a string).
         """
         etype, value, last_traceback = self._get_exc_info()
 
         if filename and issubclass(etype, SyntaxError):
             try:
                 value.filename = filename
             except:
                 # Not the format we expect; leave it alone
                 pass
         
         stb = self.SyntaxTB.structured_traceback(etype, value, [])
         self._showtraceback(etype, value, stb)
 
     # This is overridden in TerminalInteractiveShell to show a message about
     # the %paste magic.
     def showindentationerror(self):
         """Called by run_cell when there's an IndentationError in code entered
         at the prompt.
 
         This is overridden in TerminalInteractiveShell to show a message about
         the %paste magic."""
         self.showsyntaxerror()
 
     #-------------------------------------------------------------------------
     # Things related to readline
     #-------------------------------------------------------------------------
 
     def init_readline(self):
         """Command history completion/saving/reloading."""
 
         if self.readline_use:
             import IPython.utils.rlineimpl as readline
 
         self.rl_next_input = None
         self.rl_do_indent = False
 
         if not self.readline_use or not readline.have_readline:
             self.has_readline = False
             self.readline = None
             # Set a number of methods that depend on readline to be no-op
             self.readline_no_record = no_op_context
             self.set_readline_completer = no_op
             self.set_custom_completer = no_op
             if self.readline_use:
                 warn('Readline services not available or not loaded.')
         else:
             self.has_readline = True
             self.readline = readline
             sys.modules['readline'] = readline
 
             # Platform-specific configuration
             if os.name == 'nt':
                 # FIXME - check with Frederick to see if we can harmonize
                 # naming conventions with pyreadline to avoid this
                 # platform-dependent check
                 self.readline_startup_hook = readline.set_pre_input_hook
             else:
                 self.readline_startup_hook = readline.set_startup_hook
 
             # Load user's initrc file (readline config)
             # Or if libedit is used, load editrc.
             inputrc_name = os.environ.get('INPUTRC')
             if inputrc_name is None:
                 inputrc_name = '.inputrc'
                 if readline.uses_libedit:
                     inputrc_name = '.editrc'
                 inputrc_name = os.path.join(self.home_dir, inputrc_name)
             if os.path.isfile(inputrc_name):
                 try:
                     readline.read_init_file(inputrc_name)
                 except:
                     warn('Problems reading readline initialization file <%s>'
                          % inputrc_name)
 
             # Configure readline according to user's prefs
             # This is only done if GNU readline is being used.  If libedit
             # is being used (as on Leopard) the readline config is
             # not run as the syntax for libedit is different.
             if not readline.uses_libedit:
                 for rlcommand in self.readline_parse_and_bind:
                     #print "loading rl:",rlcommand  # dbg
                     readline.parse_and_bind(rlcommand)
 
             # Remove some chars from the delimiters list.  If we encounter
             # unicode chars, discard them.
             delims = readline.get_completer_delims()
             if not py3compat.PY3:
                 delims = delims.encode("ascii", "ignore")
             for d in self.readline_remove_delims:
                 delims = delims.replace(d, "")
             delims = delims.replace(ESC_MAGIC, '')
             readline.set_completer_delims(delims)
             # Store these so we can restore them if something like rpy2 modifies
             # them.
             self.readline_delims = delims
             # otherwise we end up with a monster history after a while:
             readline.set_history_length(self.history_length)
 
             self.refill_readline_hist()
             self.readline_no_record = ReadlineNoRecord(self)
 
         # Configure auto-indent for all platforms
         self.set_autoindent(self.autoindent)
 
     def refill_readline_hist(self):
         # Load the last 1000 lines from history
         self.readline.clear_history()
         stdin_encoding = sys.stdin.encoding or "utf-8"
         last_cell = u""
         for _, _, cell in self.history_manager.get_tail(1000,
                                                         include_latest=True):
             # Ignore blank lines and consecutive duplicates
             cell = cell.rstrip()
             if cell and (cell != last_cell):
                 try:
                     if self.multiline_history:
                           self.readline.add_history(py3compat.unicode_to_str(cell,
                                                                     stdin_encoding))
                     else:
                         for line in cell.splitlines():
                             self.readline.add_history(py3compat.unicode_to_str(line,
                                                                     stdin_encoding))
                     last_cell = cell
                 
                 except TypeError:
                     # The history DB can get corrupted so it returns strings
                     # containing null bytes, which readline objects to.
                     continue
 
     @skip_doctest
     def set_next_input(self, s):
         """ Sets the 'default' input string for the next command line.
 
         Requires readline.
 
         Example::
 
             In [1]: _ip.set_next_input("Hello Word")
             In [2]: Hello Word_  # cursor is here
         """
         self.rl_next_input = py3compat.cast_bytes_py2(s)
 
     # Maybe move this to the terminal subclass?
     def pre_readline(self):
         """readline hook to be used at the start of each line.
 
         Currently it handles auto-indent only."""
 
         if self.rl_do_indent:
             self.readline.insert_text(self._indent_current_str())
         if self.rl_next_input is not None:
             self.readline.insert_text(self.rl_next_input)
             self.rl_next_input = None
 
     def _indent_current_str(self):
         """return the current level of indentation as a string"""
         return self.input_splitter.indent_spaces * ' '
 
     #-------------------------------------------------------------------------
     # Things related to text completion
     #-------------------------------------------------------------------------
 
     def init_completer(self):
         """Initialize the completion machinery.
 
         This creates completion machinery that can be used by client code,
         either interactively in-process (typically triggered by the readline
         library), programatically (such as in test suites) or out-of-prcess
         (typically over the network by remote frontends).
         """
         from IPython.core.completer import IPCompleter
         from IPython.core.completerlib import (module_completer,
                 magic_run_completer, cd_completer, reset_completer)
 
         self.Completer = IPCompleter(shell=self,
                                      namespace=self.user_ns,
                                      global_namespace=self.user_global_ns,
                                      use_readline=self.has_readline,
                                      parent=self,
                                      )
         self.configurables.append(self.Completer)
 
         # Add custom completers to the basic ones built into IPCompleter
         sdisp = self.strdispatchers.get('complete_command', StrDispatch())
         self.strdispatchers['complete_command'] = sdisp
         self.Completer.custom_completers = sdisp
 
         self.set_hook('complete_command', module_completer, str_key = 'import')
         self.set_hook('complete_command', module_completer, str_key = 'from')
         self.set_hook('complete_command', magic_run_completer, str_key = '%run')
         self.set_hook('complete_command', cd_completer, str_key = '%cd')
         self.set_hook('complete_command', reset_completer, str_key = '%reset')
 
         # Only configure readline if we truly are using readline.  IPython can
         # do tab-completion over the network, in GUIs, etc, where readline
         # itself may be absent
         if self.has_readline:
             self.set_readline_completer()
 
     def complete(self, text, line=None, cursor_pos=None):
         """Return the completed text and a list of completions.
 
         Parameters
         ----------
 
            text : string
              A string of text to be completed on.  It can be given as empty and
              instead a line/position pair are given.  In this case, the
              completer itself will split the line like readline does.
 
            line : string, optional
              The complete line that text is part of.
 
            cursor_pos : int, optional
              The position of the cursor on the input line.
 
         Returns
         -------
           text : string
             The actual text that was completed.
 
           matches : list
             A sorted list with all possible completions.
 
         The optional arguments allow the completion to take more context into
         account, and are part of the low-level completion API.
 
         This is a wrapper around the completion mechanism, similar to what
         readline does at the command line when the TAB key is hit.  By
         exposing it as a method, it can be used by other non-readline
         environments (such as GUIs) for text completion.
 
         Simple usage example:
 
         In [1]: x = 'hello'
 
         In [2]: _ip.complete('x.l')
         Out[2]: ('x.l', ['x.ljust', 'x.lower', 'x.lstrip'])
         """
 
         # Inject names into __builtin__ so we can complete on the added names.
         with self.builtin_trap:
             return self.Completer.complete(text, line, cursor_pos)
 
     def set_custom_completer(self, completer, pos=0):
         """Adds a new custom completer function.
 
         The position argument (defaults to 0) is the index in the completers
         list where you want the completer to be inserted."""
 
         newcomp = types.MethodType(completer,self.Completer)
         self.Completer.matchers.insert(pos,newcomp)
 
     def set_readline_completer(self):
         """Reset readline's completer to be our own."""
         self.readline.set_completer(self.Completer.rlcomplete)
 
     def set_completer_frame(self, frame=None):
         """Set the frame of the completer."""
         if frame:
             self.Completer.namespace = frame.f_locals
             self.Completer.global_namespace = frame.f_globals
         else:
             self.Completer.namespace = self.user_ns
             self.Completer.global_namespace = self.user_global_ns
 
     #-------------------------------------------------------------------------
     # Things related to magics
     #-------------------------------------------------------------------------
 
     def init_magics(self):
         from IPython.core import magics as m
         self.magics_manager = magic.MagicsManager(shell=self,
                                    parent=self,
                                    user_magics=m.UserMagics(self))
         self.configurables.append(self.magics_manager)
 
         # Expose as public API from the magics manager
         self.register_magics = self.magics_manager.register
         self.define_magic = self.magics_manager.define_magic
 
         self.register_magics(m.AutoMagics, m.BasicMagics, m.CodeMagics,
             m.ConfigMagics, m.DeprecatedMagics, m.DisplayMagics, m.ExecutionMagics,
             m.ExtensionMagics, m.HistoryMagics, m.LoggingMagics,
             m.NamespaceMagics, m.OSMagics, m.PylabMagics, m.ScriptMagics,
         )
 
         # Register Magic Aliases
         mman = self.magics_manager
         # FIXME: magic aliases should be defined by the Magics classes
         # or in MagicsManager, not here
         mman.register_alias('ed', 'edit')
         mman.register_alias('hist', 'history')
         mman.register_alias('rep', 'recall')
         mman.register_alias('SVG', 'svg', 'cell')
         mman.register_alias('HTML', 'html', 'cell')
         mman.register_alias('file', 'writefile', 'cell')
 
         # FIXME: Move the color initialization to the DisplayHook, which
         # should be split into a prompt manager and displayhook. We probably
         # even need a centralize colors management object.
         self.magic('colors %s' % self.colors)
     
     # Defined here so that it's included in the documentation
     @functools.wraps(magic.MagicsManager.register_function)
     def register_magic_function(self, func, magic_kind='line', magic_name=None):
         self.magics_manager.register_function(func, 
                                   magic_kind=magic_kind, magic_name=magic_name)
 
     def run_line_magic(self, magic_name, line):
         """Execute the given line magic.
 
         Parameters
         ----------
         magic_name : str
           Name of the desired magic function, without '%' prefix.
 
         line : str
           The rest of the input line as a single string.
         """
         fn = self.find_line_magic(magic_name)
         if fn is None:
             cm = self.find_cell_magic(magic_name)
             etpl = "Line magic function `%%%s` not found%s."
             extra = '' if cm is None else (' (But cell magic `%%%%%s` exists, '
                                     'did you mean that instead?)' % magic_name )
             error(etpl % (magic_name, extra))
         else:
             # Note: this is the distance in the stack to the user's frame.
             # This will need to be updated if the internal calling logic gets
             # refactored, or else we'll be expanding the wrong variables.
             stack_depth = 2
             magic_arg_s = self.var_expand(line, stack_depth)
             # Put magic args in a list so we can call with f(*a) syntax
             args = [magic_arg_s]
             kwargs = {}
             # Grab local namespace if we need it:
             if getattr(fn, "needs_local_scope", False):
                 kwargs['local_ns'] = sys._getframe(stack_depth).f_locals
             with self.builtin_trap:
                 result = fn(*args,**kwargs)
             return result
 
     def run_cell_magic(self, magic_name, line, cell):
         """Execute the given cell magic.
         
         Parameters
         ----------
         magic_name : str
           Name of the desired magic function, without '%' prefix.
 
         line : str
           The rest of the first input line as a single string.
 
         cell : str
           The body of the cell as a (possibly multiline) string.
         """
         fn = self.find_cell_magic(magic_name)
         if fn is None:
             lm = self.find_line_magic(magic_name)
             etpl = "Cell magic `%%{0}` not found{1}."
             extra = '' if lm is None else (' (But line magic `%{0}` exists, '
                             'did you mean that instead?)'.format(magic_name))
             error(etpl.format(magic_name, extra))
         elif cell == '':
             message = '%%{0} is a cell magic, but the cell body is empty.'.format(magic_name)
             if self.find_line_magic(magic_name) is not None:
                 message += ' Did you mean the line magic %{0} (single %)?'.format(magic_name)
             raise UsageError(message)
         else:
             # Note: this is the distance in the stack to the user's frame.
             # This will need to be updated if the internal calling logic gets
             # refactored, or else we'll be expanding the wrong variables.
             stack_depth = 2
             magic_arg_s = self.var_expand(line, stack_depth)
             with self.builtin_trap:
                 result = fn(magic_arg_s, cell)
             return result
 
     def find_line_magic(self, magic_name):
         """Find and return a line magic by name.
 
         Returns None if the magic isn't found."""
         return self.magics_manager.magics['line'].get(magic_name)
 
     def find_cell_magic(self, magic_name):
         """Find and return a cell magic by name.
 
         Returns None if the magic isn't found."""
         return self.magics_manager.magics['cell'].get(magic_name)
 
     def find_magic(self, magic_name, magic_kind='line'):
         """Find and return a magic of the given type by name.
 
         Returns None if the magic isn't found."""
         return self.magics_manager.magics[magic_kind].get(magic_name)
 
     def magic(self, arg_s):
         """DEPRECATED. Use run_line_magic() instead.
 
         Call a magic function by name.
 
         Input: a string containing the name of the magic function to call and
         any additional arguments to be passed to the magic.
 
         magic('name -opt foo bar') is equivalent to typing at the ipython
         prompt:
 
         In[1]: %name -opt foo bar
 
         To call a magic without arguments, simply use magic('name').
 
         This provides a proper Python function to call IPython's magics in any
         valid Python code you can type at the interpreter, including loops and
         compound statements.
         """
         # TODO: should we issue a loud deprecation warning here?
         magic_name, _, magic_arg_s = arg_s.partition(' ')
         magic_name = magic_name.lstrip(prefilter.ESC_MAGIC)
         return self.run_line_magic(magic_name, magic_arg_s)
 
     #-------------------------------------------------------------------------
     # Things related to macros
     #-------------------------------------------------------------------------
 
     def define_macro(self, name, themacro):
         """Define a new macro
 
         Parameters
         ----------
         name : str
             The name of the macro.
         themacro : str or Macro
             The action to do upon invoking the macro.  If a string, a new
             Macro object is created by passing the string to it.
         """
 
         from IPython.core import macro
 
         if isinstance(themacro, string_types):
             themacro = macro.Macro(themacro)
         if not isinstance(themacro, macro.Macro):
             raise ValueError('A macro must be a string or a Macro instance.')
         self.user_ns[name] = themacro
 
     #-------------------------------------------------------------------------
     # Things related to the running of system commands
     #-------------------------------------------------------------------------
 
     def system_piped(self, cmd):
         """Call the given cmd in a subprocess, piping stdout/err
 
         Parameters
         ----------
         cmd : str
           Command to execute (can not end in '&', as background processes are
           not supported.  Should not be a command that expects input
           other than simple text.
         """
         if cmd.rstrip().endswith('&'):
             # this is *far* from a rigorous test
             # We do not support backgrounding processes because we either use
             # pexpect or pipes to read from.  Users can always just call
             # os.system() or use ip.system=ip.system_raw
             # if they really want a background process.
             raise OSError("Background processes not supported.")
 
         # we explicitly do NOT return the subprocess status code, because
         # a non-None value would trigger :func:`sys.displayhook` calls.
         # Instead, we store the exit_code in user_ns.
         self.user_ns['_exit_code'] = system(self.var_expand(cmd, depth=1))
 
     def system_raw(self, cmd):
         """Call the given cmd in a subprocess using os.system on Windows or
         subprocess.call using the system shell on other platforms.
 
         Parameters
         ----------
         cmd : str
           Command to execute.
         """
         cmd = self.var_expand(cmd, depth=1)
         # protect os.system from UNC paths on Windows, which it can't handle:
         if sys.platform == 'win32':
             from IPython.utils._process_win32 import AvoidUNCPath
             with AvoidUNCPath() as path:
                 if path is not None:
                     cmd = '"pushd %s &&"%s' % (path, cmd)
                 cmd = py3compat.unicode_to_str(cmd)
                 ec = os.system(cmd)
         else:
             cmd = py3compat.unicode_to_str(cmd)
             # Call the cmd using the OS shell, instead of the default /bin/sh, if set.
             ec = subprocess.call(cmd, shell=True, executable=os.environ.get('SHELL', None))
             # exit code is positive for program failure, or negative for
             # terminating signal number.
         
         # We explicitly do NOT return the subprocess status code, because
         # a non-None value would trigger :func:`sys.displayhook` calls.
         # Instead, we store the exit_code in user_ns.
         self.user_ns['_exit_code'] = ec
 
     # use piped system by default, because it is better behaved
     system = system_piped
 
     def getoutput(self, cmd, split=True, depth=0):
         """Get output (possibly including stderr) from a subprocess.
 
         Parameters
         ----------
         cmd : str
           Command to execute (can not end in '&', as background processes are
           not supported.
         split : bool, optional
           If True, split the output into an IPython SList.  Otherwise, an
           IPython LSString is returned.  These are objects similar to normal
           lists and strings, with a few convenience attributes for easier
           manipulation of line-based output.  You can use '?' on them for
           details.
         depth : int, optional
           How many frames above the caller are the local variables which should
           be expanded in the command string? The default (0) assumes that the
           expansion variables are in the stack frame calling this function.
         """
         if cmd.rstrip().endswith('&'):
             # this is *far* from a rigorous test
             raise OSError("Background processes not supported.")
         out = getoutput(self.var_expand(cmd, depth=depth+1))
         if split:
             out = SList(out.splitlines())
         else:
             out = LSString(out)
         return out
 
     #-------------------------------------------------------------------------
     # Things related to aliases
     #-------------------------------------------------------------------------
 
     def init_alias(self):
         self.alias_manager = AliasManager(shell=self, parent=self)
         self.configurables.append(self.alias_manager)
 
     #-------------------------------------------------------------------------
     # Things related to extensions
     #-------------------------------------------------------------------------
 
     def init_extension_manager(self):
         self.extension_manager = ExtensionManager(shell=self, parent=self)
         self.configurables.append(self.extension_manager)
 
     #-------------------------------------------------------------------------
     # Things related to payloads
     #-------------------------------------------------------------------------
 
     def init_payload(self):
         self.payload_manager = PayloadManager(parent=self)
         self.configurables.append(self.payload_manager)
     
     #-------------------------------------------------------------------------
     # Things related to widgets
     #-------------------------------------------------------------------------
     
     def init_comms(self):
         # not implemented in the base class
         pass
     
     #-------------------------------------------------------------------------
     # Things related to the prefilter
     #-------------------------------------------------------------------------
 
     def init_prefilter(self):
         self.prefilter_manager = PrefilterManager(shell=self, parent=self)
         self.configurables.append(self.prefilter_manager)
         # Ultimately this will be refactored in the new interpreter code, but
         # for now, we should expose the main prefilter method (there's legacy
         # code out there that may rely on this).
         self.prefilter = self.prefilter_manager.prefilter_lines
 
     def auto_rewrite_input(self, cmd):
         """Print to the screen the rewritten form of the user's command.
 
         This shows visual feedback by rewriting input lines that cause
         automatic calling to kick in, like::
 
           /f x
 
         into::
 
           ------> f(x)
 
         after the user's input prompt.  This helps the user understand that the
         input line was transformed automatically by IPython.
         """
         if not self.show_rewritten_input:
             return
         
         rw = self.prompt_manager.render('rewrite') + cmd
 
         try:
             # plain ascii works better w/ pyreadline, on some machines, so
             # we use it and only print uncolored rewrite if we have unicode
             rw = str(rw)
             print(rw, file=io.stdout)
         except UnicodeEncodeError:
             print("------> " + cmd)
 
     #-------------------------------------------------------------------------
     # Things related to extracting values/expressions from kernel and user_ns
     #-------------------------------------------------------------------------
 
     def _user_obj_error(self):
         """return simple exception dict
         
         for use in user_variables / expressions
         """
         
         etype, evalue, tb = self._get_exc_info()
         stb = self.InteractiveTB.get_exception_only(etype, evalue)
         
         exc_info = {
             u'status' : 'error',
             u'traceback' : stb,
             u'ename' : unicode_type(etype.__name__),
             u'evalue' : py3compat.safe_unicode(evalue),
         }
 
         return exc_info
     
     def _format_user_obj(self, obj):
         """format a user object to display dict
         
         for use in user_expressions / variables
         """
         
         data, md = self.display_formatter.format(obj)
         value = {
             'status' : 'ok',
             'data' : data,
             'metadata' : md,
         }
         return value
     
     def user_variables(self, names):
         """Get a list of variable names from the user's namespace.
 
         Parameters
         ----------
         names : list of strings
           A list of names of variables to be read from the user namespace.
 
         Returns
         -------
         A dict, keyed by the input names and with the rich mime-type repr(s) of each value.
         Each element will be a sub-dict of the same form as a display_data message.
         """
         out = {}
         user_ns = self.user_ns
         
         for varname in names:
             try:
                 value = self._format_user_obj(user_ns[varname])
             except:
                 value = self._user_obj_error()
             out[varname] = value
         return out
 
     def user_expressions(self, expressions):
         """Evaluate a dict of expressions in the user's namespace.
 
         Parameters
         ----------
         expressions : dict
           A dict with string keys and string values.  The expression values
           should be valid Python expressions, each of which will be evaluated
           in the user namespace.
 
         Returns
         -------
         A dict, keyed like the input expressions dict, with the rich mime-typed
         display_data of each value.
         """
         out = {}
         user_ns = self.user_ns
         global_ns = self.user_global_ns
         
         for key, expr in iteritems(expressions):
             try:
                 value = self._format_user_obj(eval(expr, global_ns, user_ns))
             except:
                 value = self._user_obj_error()
             out[key] = value
         return out
 
     #-------------------------------------------------------------------------
     # Things related to the running of code
     #-------------------------------------------------------------------------
 
     def ex(self, cmd):
         """Execute a normal python statement in user namespace."""
         with self.builtin_trap:
             exec(cmd, self.user_global_ns, self.user_ns)
 
     def ev(self, expr):
         """Evaluate python expression expr in user namespace.
 
         Returns the result of evaluation
         """
         with self.builtin_trap:
             return eval(expr, self.user_global_ns, self.user_ns)
 
     def safe_execfile(self, fname, *where, **kw):
         """A safe version of the builtin execfile().
 
         This version will never throw an exception, but instead print
         helpful error messages to the screen.  This only works on pure
         Python files with the .py extension.
 
         Parameters
         ----------
         fname : string
             The name of the file to be executed.
         where : tuple
             One or two namespaces, passed to execfile() as (globals,locals).
             If only one is given, it is passed as both.
         exit_ignore : bool (False)
             If True, then silence SystemExit for non-zero status (it is always
             silenced for zero status, as it is so common).
         raise_exceptions : bool (False)
             If True raise exceptions everywhere. Meant for testing.
 
         """
         kw.setdefault('exit_ignore', False)
         kw.setdefault('raise_exceptions', False)
 
         fname = os.path.abspath(os.path.expanduser(fname))
 
         # Make sure we can open the file
         try:
             with open(fname) as thefile:
                 pass
         except:
             warn('Could not open file <%s> for safe execution.' % fname)
             return
 
         # Find things also in current directory.  This is needed to mimic the
         # behavior of running a script from the system command line, where
         # Python inserts the script's directory into sys.path
         dname = os.path.dirname(fname)
 
         with prepended_to_syspath(dname):
             try:
                 py3compat.execfile(fname,*where)
             except SystemExit as status:
                 # If the call was made with 0 or None exit status (sys.exit(0)
                 # or sys.exit() ), don't bother showing a traceback, as both of
                 # these are considered normal by the OS:
                 # > python -c'import sys;sys.exit(0)'; echo $?
                 # 0
                 # > python -c'import sys;sys.exit()'; echo $?
                 # 0
                 # For other exit status, we show the exception unless
                 # explicitly silenced, but only in short form.
                 if kw['raise_exceptions']:
                     raise
                 if status.code and not kw['exit_ignore']:
                     self.showtraceback(exception_only=True)
             except:
                 if kw['raise_exceptions']:
                     raise
                 self.showtraceback()
 
     def safe_execfile_ipy(self, fname):
         """Like safe_execfile, but for .ipy files with IPython syntax.
 
         Parameters
         ----------
         fname : str
             The name of the file to execute.  The filename must have a
             .ipy extension.
         """
         fname = os.path.abspath(os.path.expanduser(fname))
 
         # Make sure we can open the file
         try:
             with open(fname) as thefile:
                 pass
         except:
             warn('Could not open file <%s> for safe execution.' % fname)
             return
 
         # Find things also in current directory.  This is needed to mimic the
         # behavior of running a script from the system command line, where
         # Python inserts the script's directory into sys.path
         dname = os.path.dirname(fname)
 
         with prepended_to_syspath(dname):
             try:
                 with open(fname) as thefile:
                     # self.run_cell currently captures all exceptions
                     # raised in user code.  It would be nice if there were
                     # versions of runlines, execfile that did raise, so
                     # we could catch the errors.
                     self.run_cell(thefile.read(), store_history=False, shell_futures=False)
             except:
                 self.showtraceback()
                 warn('Unknown failure executing file: <%s>' % fname)
 
     def safe_run_module(self, mod_name, where):
         """A safe version of runpy.run_module().
 
         This version will never throw an exception, but instead print
         helpful error messages to the screen.
 
         `SystemExit` exceptions with status code 0 or None are ignored.
 
         Parameters
         ----------
         mod_name : string
             The name of the module to be executed.
         where : dict
             The globals namespace.
         """
         try:
             try:
                 where.update(
                     runpy.run_module(str(mod_name), run_name="__main__",
                                      alter_sys=True)
                     )
             except SystemExit as status:
                 if status.code:
                     raise
         except:
             self.showtraceback()
             warn('Unknown failure executing module: <%s>' % mod_name)
 
     def _run_cached_cell_magic(self, magic_name, line):
         """Special method to call a cell magic with the data stored in self.
         """
         cell = self._current_cell_magic_body
         self._current_cell_magic_body = None
         return self.run_cell_magic(magic_name, line, cell)
 
     def run_cell(self, raw_cell, store_history=False, silent=False, shell_futures=True):
         """Run a complete IPython cell.
 
         Parameters
         ----------
         raw_cell : str
           The code (including IPython code such as %magic functions) to run.
         store_history : bool
           If True, the raw and translated cell will be stored in IPython's
           history. For user code calling back into IPython's machinery, this
           should be set to False.
         silent : bool
           If True, avoid side-effects, such as implicit displayhooks and
           and logging.  silent=True forces store_history=False.
         shell_futures : bool
           If True, the code will share future statements with the interactive
           shell. It will both be affected by previous __future__ imports, and
           any __future__ imports in the code will affect the shell. If False,
           __future__ imports are not shared in either direction.
         """
         if (not raw_cell) or raw_cell.isspace():
             return
         
         if silent:
             store_history = False
 
         self.input_transformer_manager.push(raw_cell)
         cell = self.input_transformer_manager.source_reset()
 
         # Our own compiler remembers the __future__ environment. If we want to
         # run code with a separate __future__ environment, use the default
         # compiler
         compiler = self.compile if shell_futures else CachingCompiler()
 
         with self.builtin_trap:
             prefilter_failed = False
             if len(cell.splitlines()) == 1:
                 try:
                     # use prefilter_lines to handle trailing newlines
                     # restore trailing newline for ast.parse
                     cell = self.prefilter_manager.prefilter_lines(cell) + '\n'
                 except AliasError as e:
                     error(e)
                     prefilter_failed = True
                 except Exception:
                     # don't allow prefilter errors to crash IPython
                     self.showtraceback()
                     prefilter_failed = True
 
             # Store raw and processed history
             if store_history:
                 self.history_manager.store_inputs(self.execution_count,
                                                   cell, raw_cell)
             if not silent:
                 self.logger.log(cell, raw_cell)
 
             if not prefilter_failed:
                 # don't run if prefilter failed
                 cell_name = self.compile.cache(cell, self.execution_count)
 
                 with self.display_trap:
                     try:
                         code_ast = compiler.ast_parse(cell, filename=cell_name)
                     except IndentationError:
                         self.showindentationerror()
                         if store_history:
                             self.execution_count += 1
                         return None
                     except (OverflowError, SyntaxError, ValueError, TypeError,
                             MemoryError):
                         self.showsyntaxerror()
                         if store_history:
                             self.execution_count += 1
                         return None
                     
                     code_ast = self.transform_ast(code_ast)
                     
                     interactivity = "none" if silent else self.ast_node_interactivity
                     self.run_ast_nodes(code_ast.body, cell_name,
                                        interactivity=interactivity, compiler=compiler)
                     
                     # Execute any registered post-execution functions.
                     # unless we are silent
                     post_exec = [] if silent else iteritems(self._post_execute)
                     
                     for func, status in post_exec:
                         if self.disable_failing_post_execute and not status:
                             continue
                         try:
                             func()
                         except KeyboardInterrupt:
                             print("\nKeyboardInterrupt", file=io.stderr)
                         except Exception:
                             # register as failing:
                             self._post_execute[func] = False
                             self.showtraceback()
                             print('\n'.join([
                                 "post-execution function %r produced an error." % func,
                                 "If this problem persists, you can disable failing post-exec functions with:",
                                 "",
                                 "    get_ipython().disable_failing_post_execute = True"
                             ]), file=io.stderr)
 
         if store_history:
             # Write output to the database. Does nothing unless
             # history output logging is enabled.
             self.history_manager.store_output(self.execution_count)
             # Each cell is a *single* input, regardless of how many lines it has
             self.execution_count += 1
     
     def transform_ast(self, node):
         """Apply the AST transformations from self.ast_transformers
         
         Parameters
         ----------
         node : ast.Node
           The root node to be transformed. Typically called with the ast.Module
           produced by parsing user input.
         
         Returns
         -------
         An ast.Node corresponding to the node it was called with. Note that it
         may also modify the passed object, so don't rely on references to the
         original AST.
         """
         for transformer in self.ast_transformers:
             try:
                 node = transformer.visit(node)
             except Exception:
                 warn("AST transformer %r threw an error. It will be unregistered." % transformer)
                 self.ast_transformers.remove(transformer)
         
         if self.ast_transformers:
             ast.fix_missing_locations(node)
         return node
                 
 
     def run_ast_nodes(self, nodelist, cell_name, interactivity='last_expr',
                         compiler=compile):
         """Run a sequence of AST nodes. The execution mode depends on the
         interactivity parameter.
 
         Parameters
         ----------
         nodelist : list
           A sequence of AST nodes to run.
         cell_name : str
           Will be passed to the compiler as the filename of the cell. Typically
           the value returned by ip.compile.cache(cell).
         interactivity : str
           'all', 'last', 'last_expr' or 'none', specifying which nodes should be
           run interactively (displaying output from expressions). 'last_expr'
           will run the last node interactively only if it is an expression (i.e.
           expressions in loops or other blocks are not displayed. Other values
           for this parameter will raise a ValueError.
         compiler : callable
           A function with the same interface as the built-in compile(), to turn
           the AST nodes into code objects. Default is the built-in compile().
         """
         if not nodelist:
             return
 
         if interactivity == 'last_expr':
             if isinstance(nodelist[-1], ast.Expr):
                 interactivity = "last"
             else:
                 interactivity = "none"
 
         if interactivity == 'none':
             to_run_exec, to_run_interactive = nodelist, []
         elif interactivity == 'last':
             to_run_exec, to_run_interactive = nodelist[:-1], nodelist[-1:]
         elif interactivity == 'all':
             to_run_exec, to_run_interactive = [], nodelist
         else:
             raise ValueError("Interactivity was %r" % interactivity)
 
         exec_count = self.execution_count
 
         try:
             for i, node in enumerate(to_run_exec):
                 mod = ast.Module([node])
                 code = compiler(mod, cell_name, "exec")
                 if self.run_code(code):
                     return True
 
             for i, node in enumerate(to_run_interactive):
                 mod = ast.Interactive([node])
                 code = compiler(mod, cell_name, "single")
                 if self.run_code(code):
                     return True
 
             # Flush softspace
             if softspace(sys.stdout, 0):
                 print()
 
         except:
             # It's possible to have exceptions raised here, typically by
             # compilation of odd code (such as a naked 'return' outside a
             # function) that did parse but isn't valid. Typically the exception
             # is a SyntaxError, but it's safest just to catch anything and show
             # the user a traceback.
 
             # We do only one try/except outside the loop to minimize the impact
             # on runtime, and also because if any node in the node list is
             # broken, we should stop execution completely.
             self.showtraceback()
 
         return False
 
     def run_code(self, code_obj):
         """Execute a code object.
 
         When an exception occurs, self.showtraceback() is called to display a
         traceback.
 
         Parameters
         ----------
         code_obj : code object
           A compiled code object, to be executed
 
         Returns
         -------
         False : successful execution.
         True : an error occurred.
         """
 
         # Set our own excepthook in case the user code tries to call it
         # directly, so that the IPython crash handler doesn't get triggered
         old_excepthook,sys.excepthook = sys.excepthook, self.excepthook
 
         # we save the original sys.excepthook in the instance, in case config
         # code (such as magics) needs access to it.
         self.sys_excepthook = old_excepthook
         outflag = 1  # happens in more places, so it's easier as default
         try:
             try:
                 self.hooks.pre_run_code_hook()
                 #rprint('Running code', repr(code_obj)) # dbg
                 exec(code_obj, self.user_global_ns, self.user_ns)
             finally:
                 # Reset our crash handler in place
                 sys.excepthook = old_excepthook
         except SystemExit:
             self.showtraceback(exception_only=True)
             warn("To exit: use 'exit', 'quit', or Ctrl-D.", level=1)
         except self.custom_exceptions:
             etype,value,tb = sys.exc_info()
             self.CustomTB(etype,value,tb)
         except:
             self.showtraceback()
         else:
             outflag = 0
         return outflag
 
     # For backwards compatibility
     runcode = run_code
 
     #-------------------------------------------------------------------------
     # Things related to GUI support and pylab
     #-------------------------------------------------------------------------
 
     def enable_gui(self, gui=None):
         raise NotImplementedError('Implement enable_gui in a subclass')
     
     def enable_matplotlib(self, gui=None):
         """Enable interactive matplotlib and inline figure support.
         
         This takes the following steps:
         
         1. select the appropriate eventloop and matplotlib backend
         2. set up matplotlib for interactive use with that backend
         3. configure formatters for inline figure display
         4. enable the selected gui eventloop
         
         Parameters
         ----------
         gui : optional, string
           If given, dictates the choice of matplotlib GUI backend to use
           (should be one of IPython's supported backends, 'qt', 'osx', 'tk',
           'gtk', 'wx' or 'inline'), otherwise we use the default chosen by
           matplotlib (as dictated by the matplotlib build-time options plus the
           user's matplotlibrc configuration file).  Note that not all backends
           make sense in all contexts, for example a terminal ipython can't
           display figures inline.
         """
         from IPython.core import pylabtools as pt
         gui, backend = pt.find_gui_and_backend(gui, self.pylab_gui_select)
     
         if gui != 'inline':
             # If we have our first gui selection, store it
             if self.pylab_gui_select is None:
                 self.pylab_gui_select = gui
             # Otherwise if they are different
             elif gui != self.pylab_gui_select:
                 print ('Warning: Cannot change to a different GUI toolkit: %s.'
                         ' Using %s instead.' % (gui, self.pylab_gui_select))
                 gui, backend = pt.find_gui_and_backend(self.pylab_gui_select)
         
         pt.activate_matplotlib(backend)
         pt.configure_inline_support(self, backend)
         
         # Now we must activate the gui pylab wants to use, and fix %run to take
         # plot updates into account
         self.enable_gui(gui)
         self.magics_manager.registry['ExecutionMagics'].default_runner = \
             pt.mpl_runner(self.safe_execfile)
         
         return gui, backend
 
     def enable_pylab(self, gui=None, import_all=True, welcome_message=False):
         """Activate pylab support at runtime.
 
         This turns on support for matplotlib, preloads into the interactive
         namespace all of numpy and pylab, and configures IPython to correctly
         interact with the GUI event loop.  The GUI backend to be used can be
         optionally selected with the optional ``gui`` argument.
         
         This method only adds preloading the namespace to InteractiveShell.enable_matplotlib.
 
         Parameters
         ----------
         gui : optional, string
           If given, dictates the choice of matplotlib GUI backend to use
           (should be one of IPython's supported backends, 'qt', 'osx', 'tk',
           'gtk', 'wx' or 'inline'), otherwise we use the default chosen by
           matplotlib (as dictated by the matplotlib build-time options plus the
           user's matplotlibrc configuration file).  Note that not all backends
           make sense in all contexts, for example a terminal ipython can't
           display figures inline.
         import_all : optional, bool, default: True
           Whether to do `from numpy import *` and `from pylab import *`
           in addition to module imports.
         welcome_message : deprecated
           This argument is ignored, no welcome message will be displayed.
         """
         from IPython.core.pylabtools import import_pylab
         
         gui, backend = self.enable_matplotlib(gui)
         
         # We want to prevent the loading of pylab to pollute the user's
         # namespace as shown by the %who* magics, so we execute the activation
         # code in an empty namespace, and we update *both* user_ns and
         # user_ns_hidden with this information.
         ns = {}
         import_pylab(ns, import_all)
         # warn about clobbered names
         ignored = set(["__builtins__"])
         both = set(ns).intersection(self.user_ns).difference(ignored)
         clobbered = [ name for name in both if self.user_ns[name] is not ns[name] ]
         self.user_ns.update(ns)
         self.user_ns_hidden.update(ns)
         return gui, backend, clobbered
 
     #-------------------------------------------------------------------------
     # Utilities
     #-------------------------------------------------------------------------
 
     def var_expand(self, cmd, depth=0, formatter=DollarFormatter()):
         """Expand python variables in a string.
 
         The depth argument indicates how many frames above the caller should
         be walked to look for the local namespace where to expand variables.
 
         The global namespace for expansion is always the user's interactive
         namespace.
         """
         ns = self.user_ns.copy()
         ns.update(sys._getframe(depth+1).f_locals)
         try:
             # We have to use .vformat() here, because 'self' is a valid and common
             # name, and expanding **ns for .format() would make it collide with
             # the 'self' argument of the method.
             cmd = formatter.vformat(cmd, args=[], kwargs=ns)
         except Exception:
             # if formatter couldn't format, just let it go untransformed
             pass
         return cmd
 
     def mktempfile(self, data=None, prefix='ipython_edit_'):
         """Make a new tempfile and return its filename.
 
         This makes a call to tempfile.mktemp, but it registers the created
         filename internally so ipython cleans it up at exit time.
 
         Optional inputs:
 
           - data(None): if data is given, it gets written out to the temp file
             immediately, and the file is closed again."""
 
         filename = tempfile.mktemp('.py', prefix)
         self.tempfiles.append(filename)
 
         if data:
             tmp_file = open(filename,'w')
             tmp_file.write(data)
             tmp_file.close()
         return filename
 
     # TODO:  This should be removed when Term is refactored.
     def write(self,data):
         """Write a string to the default output"""
         io.stdout.write(data)
 
     # TODO:  This should be removed when Term is refactored.
     def write_err(self,data):
         """Write a string to the default error output"""
         io.stderr.write(data)
 
     def ask_yes_no(self, prompt, default=None):
         if self.quiet:
             return True
         return ask_yes_no(prompt,default)
 
     def show_usage(self):
         """Show a usage message"""
         page.page(IPython.core.usage.interactive_usage)
 
     def extract_input_lines(self, range_str, raw=False):
         """Return as a string a set of input history slices.
 
         Parameters
         ----------
         range_str : string
             The set of slices is given as a string, like "~5/6-~4/2 4:8 9",
             since this function is for use by magic functions which get their
             arguments as strings. The number before the / is the session
             number: ~n goes n back from the current session.
 
-        Optional Parameters:
-          - raw(False): by default, the processed input is used.  If this is
-            true, the raw input history is used instead.
+        raw : bool, optional
+            By default, the processed input is used.  If this is true, the raw
+            input history is used instead.
 
-        Note that slices can be called with two notations:
+        Notes
+        -----
 
-        N:M -> standard python form, means including items N...(M-1).
+        Slices can be described with two notations:
 
-        N-M -> include items N..M (closed endpoint).
+        * ``N:M`` -> standard python form, means including items N...(M-1).
+        * ``N-M`` -> include items N..M (closed endpoint).
         """
         lines = self.history_manager.get_range_by_str(range_str, raw=raw)
         return "\n".join(x for _, _, x in lines)
 
     def find_user_code(self, target, raw=True, py_only=False, skip_encoding_cookie=True):
         """Get a code string from history, file, url, or a string or macro.
 
         This is mainly used by magic functions.
 
         Parameters
         ----------
 
         target : str
 
           A string specifying code to retrieve. This will be tried respectively
           as: ranges of input history (see %history for syntax), url,
           correspnding .py file, filename, or an expression evaluating to a
           string or Macro in the user namespace.
 
         raw : bool
           If true (default), retrieve raw history. Has no effect on the other
           retrieval mechanisms.
 
         py_only : bool (default False)
           Only try to fetch python code, do not try alternative methods to decode file
           if unicode fails.
 
         Returns
         -------
         A string of code.
 
         ValueError is raised if nothing is found, and TypeError if it evaluates
         to an object of another type. In each case, .args[0] is a printable
         message.
         """
         code = self.extract_input_lines(target, raw=raw)  # Grab history
         if code:
             return code
         utarget = unquote_filename(target)
         try:
             if utarget.startswith(('http://', 'https://')):
                 return openpy.read_py_url(utarget, skip_encoding_cookie=skip_encoding_cookie)
         except UnicodeDecodeError:
             if not py_only :
                 # Deferred import
                 try:
                     from urllib.request import urlopen  # Py3
                 except ImportError:
                     from urllib import urlopen
                 response = urlopen(target)
                 return response.read().decode('latin1')
             raise ValueError(("'%s' seem to be unreadable.") % utarget)
 
         potential_target = [target]
         try :
             potential_target.insert(0,get_py_filename(target))
         except IOError:
             pass
 
         for tgt in potential_target :
             if os.path.isfile(tgt):                        # Read file
                 try :
                     return openpy.read_py_file(tgt, skip_encoding_cookie=skip_encoding_cookie)
                 except UnicodeDecodeError :
                     if not py_only :
                         with io_open(tgt,'r', encoding='latin1') as f :
                             return f.read()
                     raise ValueError(("'%s' seem to be unreadable.") % target)
             elif os.path.isdir(os.path.expanduser(tgt)):
                 raise ValueError("'%s' is a directory, not a regular file." % target)
 
         try:                                              # User namespace
             codeobj = eval(target, self.user_ns)
         except Exception:
             raise ValueError(("'%s' was not found in history, as a file, url, "
                                 "nor in the user namespace.") % target)
         if isinstance(codeobj, string_types):
             return codeobj
         elif isinstance(codeobj, Macro):
             return codeobj.value
 
         raise TypeError("%s is neither a string nor a macro." % target,
                         codeobj)
 
     #-------------------------------------------------------------------------
     # Things related to IPython exiting
     #-------------------------------------------------------------------------
     def atexit_operations(self):
         """This will be executed at the time of exit.
 
         Cleanup operations and saving of persistent data that is done
         unconditionally by IPython should be performed here.
 
         For things that may depend on startup flags or platform specifics (such
         as having readline or not), register a separate atexit function in the
         code that has the appropriate information, rather than trying to
         clutter
         """
         # Close the history session (this stores the end time and line count)
         # this must be *before* the tempfile cleanup, in case of temporary
         # history db
         self.history_manager.end_session()
 
         # Cleanup all tempfiles left around
         for tfile in self.tempfiles:
             try:
                 os.unlink(tfile)
             except OSError:
                 pass
 
         # Clear all user namespaces to release all references cleanly.
         self.reset(new_session=False)
 
         # Run user hooks
         self.hooks.shutdown_hook()
 
     def cleanup(self):
         self.restore_sys_module_state()
 
 
 class InteractiveShellABC(with_metaclass(abc.ABCMeta, object)):
     """An abstract base class for InteractiveShell."""
 
 InteractiveShellABC.register(InteractiveShell)

IPython/core/magic.py

@@ -1,690 +1,702 b''
 # encoding: utf-8
 """Magic functions for InteractiveShell.
 """
 from __future__ import print_function
 
 #-----------------------------------------------------------------------------
 #  Copyright (C) 2001 Janko Hauser <[e-mail]> and
 #  Copyright (C) 2001 Fernando Perez <[e-mail]>
 #  Copyright (C) 2008 The IPython Development Team
 
 #  Distributed under the terms of the BSD License.  The full license is in
 #  the file COPYING, distributed as part of this software.
 #-----------------------------------------------------------------------------
 
 #-----------------------------------------------------------------------------
 # Imports
 #-----------------------------------------------------------------------------
 # Stdlib
 import os
 import re
 import sys
 import types
 from getopt import getopt, GetoptError
 
 # Our own
 from IPython.config.configurable import Configurable
 from IPython.core import oinspect
 from IPython.core.error import UsageError
 from IPython.core.inputsplitter import ESC_MAGIC, ESC_MAGIC2
 from IPython.external.decorator import decorator
 from IPython.utils.ipstruct import Struct
 from IPython.utils.process import arg_split
 from IPython.utils.py3compat import string_types, iteritems
 from IPython.utils.text import dedent
 from IPython.utils.traitlets import Bool, Dict, Instance, MetaHasTraits
 from IPython.utils.warn import error
 
 #-----------------------------------------------------------------------------
 # Globals
 #-----------------------------------------------------------------------------
 
 # A dict we'll use for each class that has magics, used as temporary storage to
 # pass information between the @line/cell_magic method decorators and the
 # @magics_class class decorator, because the method decorators have no
 # access to the class when they run.  See for more details:
 # http://stackoverflow.com/questions/2366713/can-a-python-decorator-of-an-instance-method-access-the-class
 
 magics = dict(line={}, cell={})
 
 magic_kinds = ('line', 'cell')
 magic_spec = ('line', 'cell', 'line_cell')
 magic_escapes = dict(line=ESC_MAGIC, cell=ESC_MAGIC2)
 
 #-----------------------------------------------------------------------------
 # Utility classes and functions
 #-----------------------------------------------------------------------------
 
 class Bunch: pass
 
 
 def on_off(tag):
     """Return an ON/OFF string for a 1/0 input. Simple utility function."""
     return ['OFF','ON'][tag]
 
 
 def compress_dhist(dh):
     """Compress a directory history into a new one with at most 20 entries.
 
     Return a new list made from the first and last 10 elements of dhist after
     removal of duplicates.
     """
     head, tail = dh[:-10], dh[-10:]
 
     newhead = []
     done = set()
     for h in head:
         if h in done:
             continue
         newhead.append(h)
         done.add(h)
 
     return newhead + tail
 
 
 def needs_local_scope(func):
     """Decorator to mark magic functions which need to local scope to run."""
     func.needs_local_scope = True
     return func
 
 #-----------------------------------------------------------------------------
 # Class and method decorators for registering magics
 #-----------------------------------------------------------------------------
 
 def magics_class(cls):
     """Class decorator for all subclasses of the main Magics class.
 
     Any class that subclasses Magics *must* also apply this decorator, to
     ensure that all the methods that have been decorated as line/cell magics
     get correctly registered in the class instance.  This is necessary because
     when method decorators run, the class does not exist yet, so they
     temporarily store their information into a module global.  Application of
     this class decorator copies that global data to the class instance and
     clears the global.
 
     Obviously, this mechanism is not thread-safe, which means that the
     *creation* of subclasses of Magic should only be done in a single-thread
     context.  Instantiation of the classes has no restrictions.  Given that
     these classes are typically created at IPython startup time and before user
     application code becomes active, in practice this should not pose any
     problems.
     """
     cls.registered = True
     cls.magics = dict(line = magics['line'],
                       cell = magics['cell'])
     magics['line'] = {}
     magics['cell'] = {}
     return cls
 
 
 def record_magic(dct, magic_kind, magic_name, func):
     """Utility function to store a function as a magic of a specific kind.
 
     Parameters
     ----------
     dct : dict
       A dictionary with 'line' and 'cell' subdicts.
 
     magic_kind : str
       Kind of magic to be stored.
 
     magic_name : str
       Key to store the magic as.
 
     func : function
       Callable object to store.
     """
     if magic_kind == 'line_cell':
         dct['line'][magic_name] = dct['cell'][magic_name] = func
     else:
         dct[magic_kind][magic_name] = func
 
 
 def validate_type(magic_kind):
     """Ensure that the given magic_kind is valid.
 
     Check that the given magic_kind is one of the accepted spec types (stored
     in the global `magic_spec`), raise ValueError otherwise.
     """
     if magic_kind not in magic_spec:
         raise ValueError('magic_kind must be one of %s, %s given' %
                          magic_kinds, magic_kind)
 
 
 # The docstrings for the decorator below will be fairly similar for the two
 # types (method and function), so we generate them here once and reuse the
 # templates below.
 _docstring_template = \
 """Decorate the given {0} as {1} magic.
 
 The decorator can be used with or without arguments, as follows.
 
 i) without arguments: it will create a {1} magic named as the {0} being
 decorated::
 
     @deco
     def foo(...)
 
 will create a {1} magic named `foo`.
 
 ii) with one string argument: which will be used as the actual name of the
 resulting magic::
 
     @deco('bar')
     def foo(...)
 
 will create a {1} magic named `bar`.
 """
 
 # These two are decorator factories.  While they are conceptually very similar,
 # there are enough differences in the details that it's simpler to have them
 # written as completely standalone functions rather than trying to share code
 # and make a single one with convoluted logic.
 
 def _method_magic_marker(magic_kind):
     """Decorator factory for methods in Magics subclasses.
     """
 
     validate_type(magic_kind)
 
     # This is a closure to capture the magic_kind.  We could also use a class,
     # but it's overkill for just that one bit of state.
     def magic_deco(arg):
         call = lambda f, *a, **k: f(*a, **k)
 
         if callable(arg):
             # "Naked" decorator call (just @foo, no args)
             func = arg
             name = func.__name__
             retval = decorator(call, func)
             record_magic(magics, magic_kind, name, name)
         elif isinstance(arg, string_types):
             # Decorator called with arguments (@foo('bar'))
             name = arg
             def mark(func, *a, **kw):
                 record_magic(magics, magic_kind, name, func.__name__)
                 return decorator(call, func)
             retval = mark
         else:
             raise TypeError("Decorator can only be called with "
                             "string or function")
         return retval
 
     # Ensure the resulting decorator has a usable docstring
     magic_deco.__doc__ = _docstring_template.format('method', magic_kind)
     return magic_deco
 
 
 def _function_magic_marker(magic_kind):
     """Decorator factory for standalone functions.
     """
     validate_type(magic_kind)
     
     # This is a closure to capture the magic_kind.  We could also use a class,
     # but it's overkill for just that one bit of state.
     def magic_deco(arg):
         call = lambda f, *a, **k: f(*a, **k)
 
         # Find get_ipython() in the caller's namespace
         caller = sys._getframe(1)
         for ns in ['f_locals', 'f_globals', 'f_builtins']:
             get_ipython = getattr(caller, ns).get('get_ipython')
             if get_ipython is not None:
                 break
         else:
             raise NameError('Decorator can only run in context where '
                             '`get_ipython` exists')
 
         ip = get_ipython()
 
         if callable(arg):
             # "Naked" decorator call (just @foo, no args)
             func = arg
             name = func.__name__
             ip.register_magic_function(func, magic_kind, name)
             retval = decorator(call, func)
         elif isinstance(arg, string_types):
             # Decorator called with arguments (@foo('bar'))
             name = arg
             def mark(func, *a, **kw):
                 ip.register_magic_function(func, magic_kind, name)
                 return decorator(call, func)
             retval = mark
         else:
             raise TypeError("Decorator can only be called with "
                              "string or function")
         return retval
 
     # Ensure the resulting decorator has a usable docstring
     ds = _docstring_template.format('function', magic_kind)
 
     ds += dedent("""
     Note: this decorator can only be used in a context where IPython is already
     active, so that the `get_ipython()` call succeeds.  You can therefore use
     it in your startup files loaded after IPython initializes, but *not* in the
     IPython configuration file itself, which is executed before IPython is
     fully up and running.  Any file located in the `startup` subdirectory of
     your configuration profile will be OK in this sense.
     """)
     
     magic_deco.__doc__ = ds
     return magic_deco
 
 
 # Create the actual decorators for public use
 
 # These three are used to decorate methods in class definitions
 line_magic = _method_magic_marker('line')
 cell_magic = _method_magic_marker('cell')
 line_cell_magic = _method_magic_marker('line_cell')
 
 # These three decorate standalone functions and perform the decoration
 # immediately.  They can only run where get_ipython() works
 register_line_magic = _function_magic_marker('line')
 register_cell_magic = _function_magic_marker('cell')
 register_line_cell_magic = _function_magic_marker('line_cell')
 
 #-----------------------------------------------------------------------------
 # Core Magic classes
 #-----------------------------------------------------------------------------
 
 class MagicsManager(Configurable):
     """Object that handles all magic-related functionality for IPython.
     """
     # Non-configurable class attributes
 
     # A two-level dict, first keyed by magic type, then by magic function, and
     # holding the actual callable object as value.  This is the dict used for
     # magic function dispatch
     magics = Dict
 
     # A registry of the original objects that we've been given holding magics.
     registry = Dict
 
     shell = Instance('IPython.core.interactiveshell.InteractiveShellABC')
 
     auto_magic = Bool(True, config=True, help=
         "Automatically call line magics without requiring explicit % prefix")
 
     def _auto_magic_changed(self, name, value):
         self.shell.automagic = value
     
     _auto_status = [
         'Automagic is OFF, % prefix IS needed for line magics.',
         'Automagic is ON, % prefix IS NOT needed for line magics.']
 
     user_magics = Instance('IPython.core.magics.UserMagics')
 
     def __init__(self, shell=None, config=None, user_magics=None, **traits):
 
         super(MagicsManager, self).__init__(shell=shell, config=config,
                                            user_magics=user_magics, **traits)
         self.magics = dict(line={}, cell={})
         # Let's add the user_magics to the registry for uniformity, so *all*
         # registered magic containers can be found there.
         self.registry[user_magics.__class__.__name__] = user_magics
 
     def auto_status(self):
         """Return descriptive string with automagic status."""
         return self._auto_status[self.auto_magic]
     
     def lsmagic(self):
         """Return a dict of currently available magic functions.
 
         The return dict has the keys 'line' and 'cell', corresponding to the
         two types of magics we support.  Each value is a list of names.
         """
         return self.magics
 
     def lsmagic_docs(self, brief=False, missing=''):
         """Return dict of documentation of magic functions.
 
         The return dict has the keys 'line' and 'cell', corresponding to the
         two types of magics we support. Each value is a dict keyed by magic
         name whose value is the function docstring. If a docstring is
         unavailable, the value of `missing` is used instead.
 
         If brief is True, only the first line of each docstring will be returned.
         """
         docs = {}
         for m_type in self.magics:
             m_docs = {}
             for m_name, m_func in iteritems(self.magics[m_type]):
                 if m_func.__doc__:
                     if brief:
                         m_docs[m_name] = m_func.__doc__.split('\n', 1)[0]
                     else:
                         m_docs[m_name] = m_func.__doc__.rstrip()
                 else:
                     m_docs[m_name] = missing
             docs[m_type] = m_docs
         return docs
 
     def register(self, *magic_objects):
         """Register one or more instances of Magics.
 
         Take one or more classes or instances of classes that subclass the main 
         `core.Magic` class, and register them with IPython to use the magic
         functions they provide.  The registration process will then ensure that
         any methods that have decorated to provide line and/or cell magics will
         be recognized with the `%x`/`%%x` syntax as a line/cell magic
         respectively.
 
         If classes are given, they will be instantiated with the default
         constructor.  If your classes need a custom constructor, you should
         instanitate them first and pass the instance.
 
         The provided arguments can be an arbitrary mix of classes and instances.
 
         Parameters
         ----------
         magic_objects : one or more classes or instances
         """
         # Start by validating them to ensure they have all had their magic
         # methods registered at the instance level
         for m in magic_objects:
             if not m.registered:
                 raise ValueError("Class of magics %r was constructed without "
                                  "the @register_magics class decorator")
             if type(m) in (type, MetaHasTraits):
                 # If we're given an uninstantiated class
                 m = m(shell=self.shell)
 
             # Now that we have an instance, we can register it and update the
             # table of callables
             self.registry[m.__class__.__name__] = m
             for mtype in magic_kinds:
                 self.magics[mtype].update(m.magics[mtype])
 
     def register_function(self, func, magic_kind='line', magic_name=None):
         """Expose a standalone function as magic function for IPython.
 
         This will create an IPython magic (line, cell or both) from a
         standalone function.  The functions should have the following
         signatures: 
 
         * For line magics: `def f(line)`
         * For cell magics: `def f(line, cell)`
         * For a function that does both: `def f(line, cell=None)`
 
         In the latter case, the function will be called with `cell==None` when
         invoked as `%f`, and with cell as a string when invoked as `%%f`.
 
         Parameters
         ----------
         func : callable
           Function to be registered as a magic.
 
         magic_kind : str
           Kind of magic, one of 'line', 'cell' or 'line_cell'
 
         magic_name : optional str
           If given, the name the magic will have in the IPython namespace.  By
           default, the name of the function itself is used.
         """
 
         # Create the new method in the user_magics and register it in the
         # global table
         validate_type(magic_kind)
         magic_name = func.__name__ if magic_name is None else magic_name
         setattr(self.user_magics, magic_name, func)
         record_magic(self.magics, magic_kind, magic_name, func)
 
     def define_magic(self, name, func):
         """[Deprecated] Expose own function as magic function for IPython.
 
         Example::
 
             def foo_impl(self, parameter_s=''):
                 'My very own magic!. (Use docstrings, IPython reads them).'
                 print 'Magic function. Passed parameter is between < >:'
                 print '<%s>' % parameter_s
                 print 'The self object is:', self
 
             ip.define_magic('foo',foo_impl)
         """
         meth = types.MethodType(func, self.user_magics)
         setattr(self.user_magics, name, meth)
         record_magic(self.magics, 'line', name, meth)
 
     def register_alias(self, alias_name, magic_name, magic_kind='line'):
         """Register an alias to a magic function.
 
         The alias is an instance of :class:`MagicAlias`, which holds the
         name and kind of the magic it should call. Binding is done at
         call time, so if the underlying magic function is changed the alias
         will call the new function.
 
         Parameters
         ----------
         alias_name : str
           The name of the magic to be registered.
 
         magic_name : str
           The name of an existing magic.
 
         magic_kind : str
           Kind of magic, one of 'line' or 'cell'
         """
 
         # `validate_type` is too permissive, as it allows 'line_cell'
         # which we do not handle.
         if magic_kind not in magic_kinds:
             raise ValueError('magic_kind must be one of %s, %s given' %
                              magic_kinds, magic_kind)
 
         alias = MagicAlias(self.shell, magic_name, magic_kind)
         setattr(self.user_magics, alias_name, alias)
         record_magic(self.magics, magic_kind, alias_name, alias)
 
 # Key base class that provides the central functionality for magics.
 
 
 class Magics(Configurable):
     """Base class for implementing magic functions.
 
     Shell functions which can be reached as %function_name. All magic
     functions should accept a string, which they can parse for their own
     needs. This can make some functions easier to type, eg `%cd ../`
     vs. `%cd("../")`
 
     Classes providing magic functions need to subclass this class, and they
     MUST:
 
     - Use the method decorators `@line_magic` and `@cell_magic` to decorate
       individual methods as magic functions, AND
 
     - Use the class decorator `@magics_class` to ensure that the magic
       methods are properly registered at the instance level upon instance
       initialization.
 
     See :mod:`magic_functions` for examples of actual implementation classes.
     """
     # Dict holding all command-line options for each magic.
     options_table = None
     # Dict for the mapping of magic names to methods, set by class decorator
     magics = None
     # Flag to check that the class decorator was properly applied
     registered = False
     # Instance of IPython shell
     shell = None
 
     def __init__(self, shell=None, **kwargs):
         if not(self.__class__.registered):
             raise ValueError('Magics subclass without registration - '
                              'did you forget to apply @magics_class?')
         if shell is not None:
             if hasattr(shell, 'configurables'):
                 shell.configurables.append(self)
             if hasattr(shell, 'config'):
                 kwargs.setdefault('parent', shell)
             kwargs['shell'] = shell
 
         self.shell = shell
         self.options_table = {}
         # The method decorators are run when the instance doesn't exist yet, so
         # they can only record the names of the methods they are supposed to
         # grab.  Only now, that the instance exists, can we create the proper
         # mapping to bound methods.  So we read the info off the original names
         # table and replace each method name by the actual bound method.
         # But we mustn't clobber the *class* mapping, in case of multiple instances.
         class_magics = self.magics
         self.magics = {}
         for mtype in magic_kinds:
             tab = self.magics[mtype] = {}
             cls_tab = class_magics[mtype]
             for magic_name, meth_name in iteritems(cls_tab):
                 if isinstance(meth_name, string_types):
                     # it's a method name, grab it
                     tab[magic_name] = getattr(self, meth_name)
                 else:
                     # it's the real thing
                     tab[magic_name] = meth_name
         # Configurable **needs** to be initiated at the end or the config
         # magics get screwed up.
         super(Magics, self).__init__(**kwargs)
 
     def arg_err(self,func):
         """Print docstring if incorrect arguments were passed"""
         print('Error in arguments:')
         print(oinspect.getdoc(func))
 
     def format_latex(self, strng):
         """Format a string for latex inclusion."""
 
         # Characters that need to be escaped for latex:
         escape_re = re.compile(r'(%|_|\$|#|&)',re.MULTILINE)
         # Magic command names as headers:
         cmd_name_re = re.compile(r'^(%s.*?):' % ESC_MAGIC,
                                  re.MULTILINE)
         # Magic commands
         cmd_re = re.compile(r'(?P<cmd>%s.+?\b)(?!\}\}:)' % ESC_MAGIC,
                             re.MULTILINE)
         # Paragraph continue
         par_re = re.compile(r'\\$',re.MULTILINE)
 
         # The "\n" symbol
         newline_re = re.compile(r'\\n')
 
         # Now build the string for output:
         #strng = cmd_name_re.sub(r'\n\\texttt{\\textsl{\\large \1}}:',strng)
         strng = cmd_name_re.sub(r'\n\\bigskip\n\\texttt{\\textbf{ \1}}:',
                                 strng)
         strng = cmd_re.sub(r'\\texttt{\g<cmd>}',strng)
         strng = par_re.sub(r'\\\\',strng)
         strng = escape_re.sub(r'\\\1',strng)
         strng = newline_re.sub(r'\\textbackslash{}n',strng)
         return strng
 
     def parse_options(self, arg_str, opt_str, *long_opts, **kw):
         """Parse options passed to an argument string.
 
-        The interface is similar to that of getopt(), but it returns back a
-        Struct with the options as keys and the stripped argument string still
-        as a string.
+        The interface is similar to that of :func:`getopt.getopt`, but it
+        returns a :class:`~IPython.utils.struct.Struct` with the options as keys
+        and the stripped argument string still as a string.
 
         arg_str is quoted as a true sys.argv vector by using shlex.split.
         This allows us to easily expand variables, glob files, quote
         arguments, etc.
 
-        Options:
-          -mode: default 'string'. If given as 'list', the argument string is
-          returned as a list (split on whitespace) instead of a string.
+        Parameters
+        ----------
+
+        arg_str : str
+          The arguments to parse.
 
-          -list_all: put all option values in lists. Normally only options
+        opt_str : str
+          The options specification.
+
+        mode : str, default 'string'
+          If given as 'list', the argument string is returned as a list (split
+          on whitespace) instead of a string.
+
+        list_all : bool, default False
+          Put all option values in lists. Normally only options
           appearing more than once are put in a list.
 
-          -posix (True): whether to split the input line in POSIX mode or not,
-          as per the conventions outlined in the shlex module from the
-          standard library."""
+        posix : bool, default True
+          Whether to split the input line in POSIX mode or not, as per the
+          conventions outlined in the :mod:`shlex` module from the standard
+          library.
+        """
 
         # inject default options at the beginning of the input line
         caller = sys._getframe(1).f_code.co_name
         arg_str = '%s %s' % (self.options_table.get(caller,''),arg_str)
 
         mode = kw.get('mode','string')
         if mode not in ['string','list']:
             raise ValueError('incorrect mode given: %s' % mode)
         # Get options
         list_all = kw.get('list_all',0)
         posix = kw.get('posix', os.name == 'posix')
         strict = kw.get('strict', True)
 
         # Check if we have more than one argument to warrant extra processing:
         odict = {}  # Dictionary with options
         args = arg_str.split()
         if len(args) >= 1:
             # If the list of inputs only has 0 or 1 thing in it, there's no
             # need to look for options
             argv = arg_split(arg_str, posix, strict)
             # Do regular option processing
             try:
                 opts,args = getopt(argv, opt_str, long_opts)
             except GetoptError as e:
                 raise UsageError('%s ( allowed: "%s" %s)' % (e.msg,opt_str,
                                         " ".join(long_opts)))
             for o,a in opts:
                 if o.startswith('--'):
                     o = o[2:]
                 else:
                     o = o[1:]
                 try:
                     odict[o].append(a)
                 except AttributeError:
                     odict[o] = [odict[o],a]
                 except KeyError:
                     if list_all:
                         odict[o] = [a]
                     else:
                         odict[o] = a
 
         # Prepare opts,args for return
         opts = Struct(odict)
         if mode == 'string':
             args = ' '.join(args)
 
         return opts,args
 
     def default_option(self, fn, optstr):
         """Make an entry in the options_table for fn, with value optstr"""
 
         if fn not in self.lsmagic():
             error("%s is not a magic function" % fn)
         self.options_table[fn] = optstr
 
 
 class MagicAlias(object):
     """An alias to another magic function.
 
     An alias is determined by its magic name and magic kind. Lookup
     is done at call time, so if the underlying magic changes the alias
     will call the new function.
 
     Use the :meth:`MagicsManager.register_alias` method or the
     `%alias_magic` magic function to create and register a new alias.
     """
     def __init__(self, shell, magic_name, magic_kind):
         self.shell = shell
         self.magic_name = magic_name
         self.magic_kind = magic_kind
 
         self.pretty_target = '%s%s' % (magic_escapes[self.magic_kind], self.magic_name)
         self.__doc__ = "Alias for `%s`." % self.pretty_target
 
         self._in_call = False
 
     def __call__(self, *args, **kwargs):
         """Call the magic alias."""
         fn = self.shell.find_magic(self.magic_name, self.magic_kind)
         if fn is None:
             raise UsageError("Magic `%s` not found." % self.pretty_target)
 
         # Protect against infinite recursion.
         if self._in_call:
             raise UsageError("Infinite recursion detected; "
                              "magic aliases cannot call themselves.")
         self._in_call = True
         try:
             return fn(*args, **kwargs)
         finally:
             self._in_call = False

IPython/core/magic_arguments.py

@@ -1,246 +1,278 b''
 ''' A decorator-based method of constructing IPython magics with `argparse`
 option handling.
 
 New magic functions can be defined like so::
 
     from IPython.core.magic_arguments import (argument, magic_arguments,
         parse_argstring)
 
     @magic_arguments()
     @argument('-o', '--option', help='An optional argument.')
     @argument('arg', type=int, help='An integer positional argument.')
     def magic_cool(self, arg):
         """ A really cool magic command.
 
     """
         args = parse_argstring(magic_cool, arg)
         ...
 
 The `@magic_arguments` decorator marks the function as having argparse arguments.
 The `@argument` decorator adds an argument using the same syntax as argparse's
 `add_argument()` method. More sophisticated uses may also require the
 `@argument_group` or `@kwds` decorator to customize the formatting and the
 parsing.
 
 Help text for the magic is automatically generated from the docstring and the
 arguments::
 
     In[1]: %cool?
         %cool [-o OPTION] arg
         
         A really cool magic command.
         
         positional arguments:
           arg                   An integer positional argument.
         
         optional arguments:
           -o OPTION, --option OPTION
                                 An optional argument.
 
 Inheritance diagram:
 
 .. inheritance-diagram:: IPython.core.magic_arguments
    :parts: 3
 
 '''
 #-----------------------------------------------------------------------------
 # Copyright (C) 2010-2011, IPython Development Team.
 #
 # Distributed under the terms of the Modified BSD License.
 #
 # The full license is in the file COPYING.txt, distributed with this software.
 #-----------------------------------------------------------------------------
 import argparse
+import re
 
 # Our own imports
 from IPython.core.error import UsageError
+from IPython.utils.decorators import undoc
 from IPython.utils.process import arg_split
 from IPython.utils.text import dedent
 
+NAME_RE = re.compile(r"[a-zA-Z][a-zA-Z0-9_-]*$")
+
+@undoc
 class MagicHelpFormatter(argparse.RawDescriptionHelpFormatter):
-    """ A HelpFormatter which dedents but otherwise preserves indentation.
+    """A HelpFormatter with a couple of changes to meet our needs.
     """
+    # Modified to dedent text.
     def _fill_text(self, text, width, indent):
         return argparse.RawDescriptionHelpFormatter._fill_text(self, dedent(text), width, indent)
 
+    # Modified to wrap argument placeholders in <> where necessary.
+    def _format_action_invocation(self, action):
+        if not action.option_strings:
+            metavar, = self._metavar_formatter(action, action.dest)(1)
+            return metavar
+
+        else:
+            parts = []
+
+            # if the Optional doesn't take a value, format is:
+            #    -s, --long
+            if action.nargs == 0:
+                parts.extend(action.option_strings)
+
+            # if the Optional takes a value, format is:
+            #    -s ARGS, --long ARGS
+            else:
+                default = action.dest.upper()
+                args_string = self._format_args(action, default)
+                # IPYTHON MODIFICATION: If args_string is not a plain name, wrap
+                # it in <> so it's valid RST.
+                if not NAME_RE.match(args_string):
+                    args_string = "<%s>" % args_string
+                for option_string in action.option_strings:
+                    parts.append('%s %s' % (option_string, args_string))
+
+            return ', '.join(parts)
+
+    # Override the default prefix ('usage') to our % magic escape,
+    # in a code block.
+    def add_usage(self, usage, actions, groups, prefix="::\n\n  %"):
+        super(MagicHelpFormatter, self).add_usage(usage, actions, groups, prefix)
+
 class MagicArgumentParser(argparse.ArgumentParser):
     """ An ArgumentParser tweaked for use by IPython magics.
     """
     def __init__(self,
                  prog=None,
                  usage=None,
                  description=None,
                  epilog=None,
                  parents=None,
                  formatter_class=MagicHelpFormatter,
                  prefix_chars='-',
                  argument_default=None,
                  conflict_handler='error',
                  add_help=False):
         if parents is None:
             parents = []
         super(MagicArgumentParser, self).__init__(prog=prog, usage=usage,
             description=description, epilog=epilog,
             parents=parents, formatter_class=formatter_class,
             prefix_chars=prefix_chars, argument_default=argument_default,
             conflict_handler=conflict_handler, add_help=add_help)
 
     def error(self, message):
         """ Raise a catchable error instead of exiting.
         """
         raise UsageError(message)
 
     def parse_argstring(self, argstring):
         """ Split a string into an argument list and parse that argument list.
         """
         argv = arg_split(argstring)
         return self.parse_args(argv)
 
 
 def construct_parser(magic_func):
     """ Construct an argument parser using the function decorations.
     """
     kwds = getattr(magic_func, 'argcmd_kwds', {})
     if 'description' not in kwds:
         kwds['description'] = getattr(magic_func, '__doc__', None)
     arg_name = real_name(magic_func)
     parser = MagicArgumentParser(arg_name, **kwds)
     # Reverse the list of decorators in order to apply them in the
     # order in which they appear in the source.
     group = None
     for deco in magic_func.decorators[::-1]:
         result = deco.add_to_parser(parser, group)
         if result is not None:
             group = result
 
-    # Replace the starting 'usage: ' with IPython's %.
-    help_text = parser.format_help()
-    if help_text.startswith('usage: '):
-        help_text = help_text.replace('usage: ', '%', 1)
-    else:
-        help_text = '%' + help_text
-
     # Replace the magic function's docstring with the full help text.
-    magic_func.__doc__ = help_text
+    magic_func.__doc__ = parser.format_help()
 
     return parser
 
 
 def parse_argstring(magic_func, argstring):
     """ Parse the string of arguments for the given magic function.
     """
     return magic_func.parser.parse_argstring(argstring)
 
 
 def real_name(magic_func):
     """ Find the real name of the magic.
     """
     magic_name = magic_func.__name__
     if magic_name.startswith('magic_'):
         magic_name = magic_name[len('magic_'):]
     return getattr(magic_func, 'argcmd_name', magic_name)
 
 
 class ArgDecorator(object):
     """ Base class for decorators to add ArgumentParser information to a method.
     """
 
     def __call__(self, func):
         if not getattr(func, 'has_arguments', False):
             func.has_arguments = True
             func.decorators = []
         func.decorators.append(self)
         return func
 
     def add_to_parser(self, parser, group):
         """ Add this object's information to the parser, if necessary.
         """
         pass
 
 
 class magic_arguments(ArgDecorator):
     """ Mark the magic as having argparse arguments and possibly adjust the
     name.
     """
 
     def __init__(self, name=None):
         self.name = name
 
     def __call__(self, func):
         if not getattr(func, 'has_arguments', False):
             func.has_arguments = True
             func.decorators = []
         if self.name is not None:
             func.argcmd_name = self.name
         # This should be the first decorator in the list of decorators, thus the
         # last to execute. Build the parser.
         func.parser = construct_parser(func)
         return func
 
 
 class ArgMethodWrapper(ArgDecorator):
 
     """
     Base class to define a wrapper for ArgumentParser method.
 
     Child class must define either `_method_name` or `add_to_parser`.
 
     """
 
     _method_name = None
 
     def __init__(self, *args, **kwds):
         self.args = args
         self.kwds = kwds
 
     def add_to_parser(self, parser, group):
         """ Add this object's information to the parser.
         """
         if group is not None:
             parser = group
         getattr(parser, self._method_name)(*self.args, **self.kwds)
         return None
 
 
 class argument(ArgMethodWrapper):
     """ Store arguments and keywords to pass to add_argument().
 
     Instances also serve to decorate command methods.
     """
     _method_name = 'add_argument'
 
 
 class defaults(ArgMethodWrapper):
     """ Store arguments and keywords to pass to set_defaults().
 
     Instances also serve to decorate command methods.
     """
     _method_name = 'set_defaults'
 
 
 class argument_group(ArgMethodWrapper):
     """ Store arguments and keywords to pass to add_argument_group().
 
     Instances also serve to decorate command methods.
     """
 
     def add_to_parser(self, parser, group):
         """ Add this object's information to the parser.
         """
         return parser.add_argument_group(*self.args, **self.kwds)
 
 
 class kwds(ArgDecorator):
     """ Provide other keywords to the sub-parser constructor.
     """
     def __init__(self, **kwds):
         self.kwds = kwds
 
     def __call__(self, func):
         func = super(kwds, self).__call__(func)
         func.argcmd_kwds = self.kwds
         return func
 
 
 __all__ = ['magic_arguments', 'argument', 'argument_group', 'kwds',
     'parse_argstring']

IPython/core/magics/basic.py

@@ -1,647 +1,648 b''
 """Implementation of basic magic functions.
 """
 #-----------------------------------------------------------------------------
 #  Copyright (c) 2012 The IPython Development Team.
 #
 #  Distributed under the terms of the Modified BSD License.
 #
 #  The full license is in the file COPYING.txt, distributed with this software.
 #-----------------------------------------------------------------------------
 
 #-----------------------------------------------------------------------------
 # Imports
 #-----------------------------------------------------------------------------
 from __future__ import print_function
 
 # Stdlib
 import io
 import json
 import sys
 from pprint import pformat
 
 # Our own packages
 from IPython.core import magic_arguments, page
 from IPython.core.error import UsageError
 from IPython.core.magic import Magics, magics_class, line_magic, magic_escapes
 from IPython.utils.text import format_screen, dedent, indent
 from IPython.testing.skipdoctest import skip_doctest
 from IPython.utils.ipstruct import Struct
 from IPython.utils.path import unquote_filename
 from IPython.utils.py3compat import unicode_type
 from IPython.utils.warn import warn, error
 
 #-----------------------------------------------------------------------------
 # Magics class implementation
 #-----------------------------------------------------------------------------
 
 class MagicsDisplay(object):
     def __init__(self, magics_manager):
         self.magics_manager = magics_manager
     
     def _lsmagic(self):
         """The main implementation of the %lsmagic"""
         mesc = magic_escapes['line']
         cesc = magic_escapes['cell']
         mman = self.magics_manager
         magics = mman.lsmagic()
         out = ['Available line magics:',
                mesc + ('  '+mesc).join(sorted(magics['line'])),
                '',
                'Available cell magics:',
                cesc + ('  '+cesc).join(sorted(magics['cell'])),
                '',
                mman.auto_status()]
         return '\n'.join(out)
 
     def _repr_pretty_(self, p, cycle):
         p.text(self._lsmagic())
     
     def __str__(self):
         return self._lsmagic()
     
     def _jsonable(self):
         """turn magics dict into jsonable dict of the same structure
         
         replaces object instances with their class names as strings
         """
         magic_dict = {}
         mman = self.magics_manager
         magics = mman.lsmagic()
         for key, subdict in magics.items():
             d = {}
             magic_dict[key] = d
             for name, obj in subdict.items():
                 try:
                     classname = obj.__self__.__class__.__name__
                 except AttributeError:
                     classname = 'Other'
                 
                 d[name] = classname
         return magic_dict
         
     def _repr_json_(self):
         return json.dumps(self._jsonable())
 
 
 @magics_class
 class BasicMagics(Magics):
     """Magics that provide central IPython functionality.
 
     These are various magics that don't fit into specific categories but that
     are all part of the base 'IPython experience'."""
 
     @magic_arguments.magic_arguments()
     @magic_arguments.argument(
         '-l', '--line', action='store_true',
         help="""Create a line magic alias."""
     )
     @magic_arguments.argument(
         '-c', '--cell', action='store_true',
         help="""Create a cell magic alias."""
     )
     @magic_arguments.argument(
         'name',
         help="""Name of the magic to be created."""
     )
     @magic_arguments.argument(
         'target',
         help="""Name of the existing line or cell magic."""
     )
     @line_magic
     def alias_magic(self, line=''):
         """Create an alias for an existing line or cell magic.
 
         Examples
         --------
         ::
+
           In [1]: %alias_magic t timeit
           Created `%t` as an alias for `%timeit`.
           Created `%%t` as an alias for `%%timeit`.
 
           In [2]: %t -n1 pass
           1 loops, best of 3: 954 ns per loop
 
           In [3]: %%t -n1
              ...: pass
              ...:
           1 loops, best of 3: 954 ns per loop
 
           In [4]: %alias_magic --cell whereami pwd
           UsageError: Cell magic function `%%pwd` not found.
           In [5]: %alias_magic --line whereami pwd
           Created `%whereami` as an alias for `%pwd`.
 
           In [6]: %whereami
           Out[6]: u'/home/testuser'
         """
         args = magic_arguments.parse_argstring(self.alias_magic, line)
         shell = self.shell
         mman = self.shell.magics_manager
         escs = ''.join(magic_escapes.values())
 
         target = args.target.lstrip(escs)
         name = args.name.lstrip(escs)
 
         # Find the requested magics.
         m_line = shell.find_magic(target, 'line')
         m_cell = shell.find_magic(target, 'cell')
         if args.line and m_line is None:
             raise UsageError('Line magic function `%s%s` not found.' %
                              (magic_escapes['line'], target))
         if args.cell and m_cell is None:
             raise UsageError('Cell magic function `%s%s` not found.' %
                              (magic_escapes['cell'], target))
 
         # If --line and --cell are not specified, default to the ones
         # that are available.
         if not args.line and not args.cell:
             if not m_line and not m_cell:
                 raise UsageError(
                     'No line or cell magic with name `%s` found.' % target
                 )
             args.line = bool(m_line)
             args.cell = bool(m_cell)
 
         if args.line:
             mman.register_alias(name, target, 'line')
             print('Created `%s%s` as an alias for `%s%s`.' % (
                 magic_escapes['line'], name,
                 magic_escapes['line'], target))
 
         if args.cell:
             mman.register_alias(name, target, 'cell')
             print('Created `%s%s` as an alias for `%s%s`.' % (
                 magic_escapes['cell'], name,
                 magic_escapes['cell'], target))
 
     @line_magic
     def lsmagic(self, parameter_s=''):
         """List currently available magic functions."""
         return MagicsDisplay(self.shell.magics_manager)
 
     def _magic_docs(self, brief=False, rest=False):
         """Return docstrings from magic functions."""
         mman = self.shell.magics_manager
         docs = mman.lsmagic_docs(brief, missing='No documentation')
 
         if rest:
             format_string = '**%s%s**::\n\n%s\n\n'
         else:
             format_string = '%s%s:\n%s\n'
 
         return ''.join(
             [format_string % (magic_escapes['line'], fname,
                               indent(dedent(fndoc)))
              for fname, fndoc in sorted(docs['line'].items())]
             +
             [format_string % (magic_escapes['cell'], fname,
                               indent(dedent(fndoc)))
              for fname, fndoc in sorted(docs['cell'].items())]
         )
 
     @line_magic
     def magic(self, parameter_s=''):
         """Print information about the magic function system.
 
         Supported formats: -latex, -brief, -rest
         """
 
         mode = ''
         try:
             mode = parameter_s.split()[0][1:]
             if mode == 'rest':
                 rest_docs = []
         except IndexError:
             pass
 
         brief = (mode == 'brief')
         rest = (mode == 'rest')
         magic_docs = self._magic_docs(brief, rest)
 
         if mode == 'latex':
             print(self.format_latex(magic_docs))
             return
         else:
             magic_docs = format_screen(magic_docs)
 
         out = ["""
 IPython's 'magic' functions
 ===========================
 
 The magic function system provides a series of functions which allow you to
 control the behavior of IPython itself, plus a lot of system-type
 features. There are two kinds of magics, line-oriented and cell-oriented.
 
 Line magics are prefixed with the % character and work much like OS
 command-line calls: they get as an argument the rest of the line, where
 arguments are passed without parentheses or quotes.  For example, this will
 time the given statement::
 
         %timeit range(1000)
 
 Cell magics are prefixed with a double %%, and they are functions that get as
 an argument not only the rest of the line, but also the lines below it in a
 separate argument.  These magics are called with two arguments: the rest of the
 call line and the body of the cell, consisting of the lines below the first.
 For example::
 
         %%timeit x = numpy.random.randn((100, 100))
         numpy.linalg.svd(x)
 
 will time the execution of the numpy svd routine, running the assignment of x
 as part of the setup phase, which is not timed.
 
 In a line-oriented client (the terminal or Qt console IPython), starting a new
 input with %% will automatically enter cell mode, and IPython will continue
 reading input until a blank line is given.  In the notebook, simply type the
 whole cell as one entity, but keep in mind that the %% escape can only be at
 the very start of the cell.
 
 NOTE: If you have 'automagic' enabled (via the command line option or with the
 %automagic function), you don't need to type in the % explicitly for line
 magics; cell magics always require an explicit '%%' escape.  By default,
 IPython ships with automagic on, so you should only rarely need the % escape.
 
 Example: typing '%cd mydir' (without the quotes) changes you working directory
 to 'mydir', if it exists.
 
 For a list of the available magic functions, use %lsmagic. For a description
 of any of them, type %magic_name?, e.g. '%cd?'.
 
 Currently the magic system has the following functions:""",
        magic_docs,
        "Summary of magic functions (from %slsmagic):" % magic_escapes['line'],
        str(self.lsmagic()),
        ]
         page.page('\n'.join(out))
 
 
     @line_magic
     def page(self, parameter_s=''):
         """Pretty print the object and display it through a pager.
 
         %page [options] OBJECT
 
         If no object is given, use _ (last output).
 
         Options:
 
           -r: page str(object), don't pretty-print it."""
 
         # After a function contributed by Olivier Aubert, slightly modified.
 
         # Process options/args
         opts, args = self.parse_options(parameter_s, 'r')
         raw = 'r' in opts
 
         oname = args and args or '_'
         info = self.shell._ofind(oname)
         if info['found']:
             txt = (raw and str or pformat)( info['obj'] )
             page.page(txt)
         else:
             print('Object `%s` not found' % oname)
 
     @line_magic
     def profile(self, parameter_s=''):
         """Print your currently active IPython profile."""
         from IPython.core.application import BaseIPythonApplication
         if BaseIPythonApplication.initialized():
             print(BaseIPythonApplication.instance().profile)
         else:
             error("profile is an application-level value, but you don't appear to be in an IPython application")
 
     @line_magic
     def pprint(self, parameter_s=''):
         """Toggle pretty printing on/off."""
         ptformatter = self.shell.display_formatter.formatters['text/plain']
         ptformatter.pprint = bool(1 - ptformatter.pprint)
         print('Pretty printing has been turned',
               ['OFF','ON'][ptformatter.pprint])
 
     @line_magic
     def colors(self, parameter_s=''):
         """Switch color scheme for prompts, info system and exception handlers.
 
         Currently implemented schemes: NoColor, Linux, LightBG.
 
         Color scheme names are not case-sensitive.
 
         Examples
         --------
         To get a plain black and white terminal::
 
           %colors nocolor
         """
         def color_switch_err(name):
             warn('Error changing %s color schemes.\n%s' %
                  (name, sys.exc_info()[1]))
 
 
         new_scheme = parameter_s.strip()
         if not new_scheme:
             raise UsageError(
                 "%colors: you must specify a color scheme. See '%colors?'")
         # local shortcut
         shell = self.shell
 
         import IPython.utils.rlineimpl as readline
 
         if not shell.colors_force and \
                 not readline.have_readline and \
                 (sys.platform == "win32" or sys.platform == "cli"):
             msg = """\
 Proper color support under MS Windows requires the pyreadline library.
 You can find it at:
 http://ipython.org/pyreadline.html
 Gary's readline needs the ctypes module, from:
 http://starship.python.net/crew/theller/ctypes
 (Note that ctypes is already part of Python versions 2.5 and newer).
 
 Defaulting color scheme to 'NoColor'"""
             new_scheme = 'NoColor'
             warn(msg)
 
         # readline option is 0
         if not shell.colors_force and not shell.has_readline:
             new_scheme = 'NoColor'
 
         # Set prompt colors
         try:
             shell.prompt_manager.color_scheme = new_scheme
         except:
             color_switch_err('prompt')
         else:
             shell.colors = \
                    shell.prompt_manager.color_scheme_table.active_scheme_name
         # Set exception colors
         try:
             shell.InteractiveTB.set_colors(scheme = new_scheme)
             shell.SyntaxTB.set_colors(scheme = new_scheme)
         except:
             color_switch_err('exception')
 
         # Set info (for 'object?') colors
         if shell.color_info:
             try:
                 shell.inspector.set_active_scheme(new_scheme)
             except:
                 color_switch_err('object inspector')
         else:
             shell.inspector.set_active_scheme('NoColor')
 
     @line_magic
     def xmode(self, parameter_s=''):
         """Switch modes for the exception handlers.
 
         Valid modes: Plain, Context and Verbose.
 
         If called without arguments, acts as a toggle."""
 
         def xmode_switch_err(name):
             warn('Error changing %s exception modes.\n%s' %
                  (name,sys.exc_info()[1]))
 
         shell = self.shell
         new_mode = parameter_s.strip().capitalize()
         try:
             shell.InteractiveTB.set_mode(mode=new_mode)
             print('Exception reporting mode:',shell.InteractiveTB.mode)
         except:
             xmode_switch_err('user')
 
     @line_magic
     def quickref(self,arg):
         """ Show a quick reference sheet """
         from IPython.core.usage import quick_reference
         qr = quick_reference + self._magic_docs(brief=True)
         page.page(qr)
 
     @line_magic
     def doctest_mode(self, parameter_s=''):
         """Toggle doctest mode on and off.
 
         This mode is intended to make IPython behave as much as possible like a
         plain Python shell, from the perspective of how its prompts, exceptions
         and output look.  This makes it easy to copy and paste parts of a
         session into doctests.  It does so by:
 
         - Changing the prompts to the classic ``>>>`` ones.
         - Changing the exception reporting mode to 'Plain'.
         - Disabling pretty-printing of output.
 
         Note that IPython also supports the pasting of code snippets that have
         leading '>>>' and '...' prompts in them.  This means that you can paste
         doctests from files or docstrings (even if they have leading
         whitespace), and the code will execute correctly.  You can then use
         '%history -t' to see the translated history; this will give you the
         input after removal of all the leading prompts and whitespace, which
         can be pasted back into an editor.
 
         With these features, you can switch into this mode easily whenever you
         need to do testing and changes to doctests, without having to leave
         your existing IPython session.
         """
 
         # Shorthands
         shell = self.shell
         pm = shell.prompt_manager
         meta = shell.meta
         disp_formatter = self.shell.display_formatter
         ptformatter = disp_formatter.formatters['text/plain']
         # dstore is a data store kept in the instance metadata bag to track any
         # changes we make, so we can undo them later.
         dstore = meta.setdefault('doctest_mode',Struct())
         save_dstore = dstore.setdefault
 
         # save a few values we'll need to recover later
         mode = save_dstore('mode',False)
         save_dstore('rc_pprint',ptformatter.pprint)
         save_dstore('xmode',shell.InteractiveTB.mode)
         save_dstore('rc_separate_out',shell.separate_out)
         save_dstore('rc_separate_out2',shell.separate_out2)
         save_dstore('rc_prompts_pad_left',pm.justify)
         save_dstore('rc_separate_in',shell.separate_in)
         save_dstore('rc_active_types',disp_formatter.active_types)
         save_dstore('prompt_templates',(pm.in_template, pm.in2_template, pm.out_template))
 
         if mode == False:
             # turn on
             pm.in_template = '>>> '
             pm.in2_template = '... '
             pm.out_template = ''
 
             # Prompt separators like plain python
             shell.separate_in = ''
             shell.separate_out = ''
             shell.separate_out2 = ''
 
             pm.justify = False
 
             ptformatter.pprint = False
             disp_formatter.active_types = ['text/plain']
 
             shell.magic('xmode Plain')
         else:
             # turn off
             pm.in_template, pm.in2_template, pm.out_template = dstore.prompt_templates
 
             shell.separate_in = dstore.rc_separate_in
 
             shell.separate_out = dstore.rc_separate_out
             shell.separate_out2 = dstore.rc_separate_out2
 
             pm.justify = dstore.rc_prompts_pad_left
 
             ptformatter.pprint = dstore.rc_pprint
             disp_formatter.active_types = dstore.rc_active_types
 
             shell.magic('xmode ' + dstore.xmode)
 
         # Store new mode and inform
         dstore.mode = bool(1-int(mode))
         mode_label = ['OFF','ON'][dstore.mode]
         print('Doctest mode is:', mode_label)
 
     @line_magic
     def gui(self, parameter_s=''):
         """Enable or disable IPython GUI event loop integration.
 
         %gui [GUINAME]
 
         This magic replaces IPython's threaded shells that were activated
         using the (pylab/wthread/etc.) command line flags.  GUI toolkits
         can now be enabled at runtime and keyboard
         interrupts should work without any problems.  The following toolkits
         are supported:  wxPython, PyQt4, PyGTK, Tk and Cocoa (OSX)::
 
             %gui wx      # enable wxPython event loop integration
             %gui qt4|qt  # enable PyQt4 event loop integration
             %gui gtk     # enable PyGTK event loop integration
             %gui gtk3    # enable Gtk3 event loop integration
             %gui tk      # enable Tk event loop integration
             %gui osx     # enable Cocoa event loop integration
                          # (requires %matplotlib 1.1)
             %gui         # disable all event loop integration
 
         WARNING:  after any of these has been called you can simply create
         an application object, but DO NOT start the event loop yourself, as
         we have already handled that.
         """
         opts, arg = self.parse_options(parameter_s, '')
         if arg=='': arg = None
         try:
             return self.shell.enable_gui(arg)
         except Exception as e:
             # print simple error message, rather than traceback if we can't
             # hook up the GUI
             error(str(e))
 
     @skip_doctest
     @line_magic
     def precision(self, s=''):
         """Set floating point precision for pretty printing.
 
         Can set either integer precision or a format string.
 
         If numpy has been imported and precision is an int,
         numpy display precision will also be set, via ``numpy.set_printoptions``.
 
         If no argument is given, defaults will be restored.
 
         Examples
         --------
         ::
 
             In [1]: from math import pi
 
             In [2]: %precision 3
             Out[2]: u'%.3f'
 
             In [3]: pi
             Out[3]: 3.142
 
             In [4]: %precision %i
             Out[4]: u'%i'
 
             In [5]: pi
             Out[5]: 3
 
             In [6]: %precision %e
             Out[6]: u'%e'
 
             In [7]: pi**10
             Out[7]: 9.364805e+04
 
             In [8]: %precision
             Out[8]: u'%r'
 
             In [9]: pi**10
             Out[9]: 93648.047476082982
         """
         ptformatter = self.shell.display_formatter.formatters['text/plain']
         ptformatter.float_precision = s
         return ptformatter.float_format
 
     @magic_arguments.magic_arguments()
     @magic_arguments.argument(
         '-e', '--export', action='store_true', default=False,
         help='Export IPython history as a notebook. The filename argument '
              'is used to specify the notebook name and format. For example '
              'a filename of notebook.ipynb will result in a notebook name '
              'of "notebook" and a format of "json". Likewise using a ".py" '
              'file extension will write the notebook as a Python script'
     )
     @magic_arguments.argument(
         '-f', '--format',
         help='Convert an existing IPython notebook to a new format. This option '
              'specifies the new format and can have the values: json, py. '
              'The target filename is chosen automatically based on the new '
              'format. The filename argument gives the name of the source file.'
     )
     @magic_arguments.argument(
         'filename', type=unicode_type,
         help='Notebook name or filename'
     )
     @line_magic
     def notebook(self, s):
         """Export and convert IPython notebooks.
 
         This function can export the current IPython history to a notebook file
         or can convert an existing notebook file into a different format. For
         example, to export the history to "foo.ipynb" do "%notebook -e foo.ipynb".
         To export the history to "foo.py" do "%notebook -e foo.py". To convert
         "foo.ipynb" to "foo.json" do "%notebook -f json foo.ipynb". Possible
         formats include (json/ipynb, py).
         """
         args = magic_arguments.parse_argstring(self.notebook, s)
 
         from IPython.nbformat import current
         args.filename = unquote_filename(args.filename)
         if args.export:
             fname, name, format = current.parse_filename(args.filename)
             cells = []
             hist = list(self.shell.history_manager.get_range())
             for session, prompt_number, input in hist[:-1]:
                 cells.append(current.new_code_cell(prompt_number=prompt_number,
                                                    input=input))
             worksheet = current.new_worksheet(cells=cells)
             nb = current.new_notebook(name=name,worksheets=[worksheet])
             with io.open(fname, 'w', encoding='utf-8') as f:
                 current.write(nb, f, format);
         elif args.format is not None:
             old_fname, old_name, old_format = current.parse_filename(args.filename)
             new_format = args.format
             if new_format == u'xml':
                 raise ValueError('Notebooks cannot be written as xml.')
             elif new_format == u'ipynb' or new_format == u'json':
                 new_fname = old_name + u'.ipynb'
                 new_format = u'json'
             elif new_format == u'py':
                 new_fname = old_name + u'.py'
             else:
                 raise ValueError('Invalid notebook format: %s' % new_format)
             with io.open(old_fname, 'r', encoding='utf-8') as f:
                 nb = current.read(f, old_format)
             with io.open(new_fname, 'w', encoding='utf-8') as f:
                 current.write(nb, f, new_format)

IPython/core/magics/code.py

@@ -1,696 +1,696 b''
 """Implementation of code management magic functions.
 """
 from __future__ import print_function
 #-----------------------------------------------------------------------------
 #  Copyright (c) 2012 The IPython Development Team.
 #
 #  Distributed under the terms of the Modified BSD License.
 #
 #  The full license is in the file COPYING.txt, distributed with this software.
 #-----------------------------------------------------------------------------
 
 #-----------------------------------------------------------------------------
 # Imports
 #-----------------------------------------------------------------------------
 
 # Stdlib
 import inspect
 import io
 import os
 import re
 import sys
 import ast
 from itertools import chain
 
 # Our own packages
 from IPython.core.error import TryNext, StdinNotImplementedError, UsageError
 from IPython.core.macro import Macro
 from IPython.core.magic import Magics, magics_class, line_magic
 from IPython.core.oinspect import find_file, find_source_lines
 from IPython.testing.skipdoctest import skip_doctest
 from IPython.utils import py3compat
 from IPython.utils.py3compat import string_types
 from IPython.utils.contexts import preserve_keys
 from IPython.utils.path import get_py_filename, unquote_filename
 from IPython.utils.warn import warn, error
 from IPython.utils.text import get_text_list
 
 #-----------------------------------------------------------------------------
 # Magic implementation classes
 #-----------------------------------------------------------------------------
 
 # Used for exception handling in magic_edit
 class MacroToEdit(ValueError): pass
 
 ipython_input_pat = re.compile(r"<ipython\-input\-(\d+)-[a-z\d]+>$")
 
 # To match, e.g. 8-10 1:5 :10 3-
 range_re = re.compile(r"""
 (?P<start>\d+)?
 ((?P<sep>[\-:])
  (?P<end>\d+)?)?
 $""", re.VERBOSE)
 
 
 def extract_code_ranges(ranges_str):
     """Turn a string of range for %%load into 2-tuples of (start, stop)
     ready to use as a slice of the content splitted by lines.
 
     Examples
     --------
     list(extract_input_ranges("5-10 2"))
     [(4, 10), (1, 2)]
     """
     for range_str in ranges_str.split():
         rmatch = range_re.match(range_str)
         if not rmatch:
             continue
         sep = rmatch.group("sep")
         start = rmatch.group("start")
         end = rmatch.group("end")
 
         if sep == '-':
             start = int(start) - 1 if start else None
             end = int(end) if end else None
         elif sep == ':':
             start = int(start) - 1 if start else None
             end = int(end) - 1 if end else None
         else:
             end = int(start)
             start = int(start) - 1
         yield (start, end)
 
 
 @skip_doctest
 def extract_symbols(code, symbols):
     """
     Return a tuple  (blocks, not_found)
     where ``blocks`` is a list of code fragments
     for each symbol parsed from code, and ``not_found`` are
     symbols not found in the code.
 
     For example::
 
         >>> code = '''a = 10
 
         def b(): return 42
 
         class A: pass'''
 
         >>> extract_symbols(code, 'A,b,z')
         (["class A: pass", "def b(): return 42"], ['z'])
     """
     symbols = symbols.split(',')
 
     # this will raise SyntaxError if code isn't valid Python
     py_code = ast.parse(code)
 
     marks = [(getattr(s, 'name', None), s.lineno) for s in py_code.body]
     code = code.split('\n')
 
     symbols_lines = {}
     
     # we already know the start_lineno of each symbol (marks). 
     # To find each end_lineno, we traverse in reverse order until each 
     # non-blank line
     end = len(code)  
     for name, start in reversed(marks):
         while not code[end - 1].strip():
             end -= 1
         if name:
             symbols_lines[name] = (start - 1, end)
         end = start - 1
 
     # Now symbols_lines is a map
     # {'symbol_name': (start_lineno, end_lineno), ...}
     
     # fill a list with chunks of codes for each requested symbol
     blocks = []
     not_found = []
     for symbol in symbols:
         if symbol in symbols_lines:
             start, end = symbols_lines[symbol]
             blocks.append('\n'.join(code[start:end]) + '\n')
         else:
             not_found.append(symbol)
 
     return blocks, not_found
 
 
 class InteractivelyDefined(Exception):
     """Exception for interactively defined variable in magic_edit"""
     def __init__(self, index):
         self.index = index
 
 
 @magics_class
 class CodeMagics(Magics):
     """Magics related to code management (loading, saving, editing, ...)."""
 
     @line_magic
     def save(self, parameter_s=''):
         """Save a set of lines or a macro to a given filename.
 
         Usage:\\
           %save [options] filename n1-n2 n3-n4 ... n5 .. n6 ...
 
         Options:
 
           -r: use 'raw' input.  By default, the 'processed' history is used,
           so that magics are loaded in their transformed version to valid
           Python.  If this option is given, the raw input as typed as the
           command line is used instead.
           
           -f: force overwrite.  If file exists, %save will prompt for overwrite
           unless -f is given.
 
           -a: append to the file instead of overwriting it.
 
         This function uses the same syntax as %history for input ranges,
         then saves the lines to the filename you specify.
 
         It adds a '.py' extension to the file if you don't do so yourself, and
         it asks for confirmation before overwriting existing files.
 
         If `-r` option is used, the default extension is `.ipy`.
         """
 
         opts,args = self.parse_options(parameter_s,'fra',mode='list')
         if not args:
             raise UsageError('Missing filename.')
         raw = 'r' in opts
         force = 'f' in opts
         append = 'a' in opts
         mode = 'a' if append else 'w'
         ext = u'.ipy' if raw else u'.py'
         fname, codefrom = unquote_filename(args[0]), " ".join(args[1:])
         if not fname.endswith((u'.py',u'.ipy')):
             fname += ext
         file_exists = os.path.isfile(fname)
         if file_exists and not force and not append:
             try:
                 overwrite = self.shell.ask_yes_no('File `%s` exists. Overwrite (y/[N])? ' % fname, default='n')
             except StdinNotImplementedError:
                 print("File `%s` exists. Use `%%save -f %s` to force overwrite" % (fname, parameter_s))
                 return
             if not overwrite :
                 print('Operation cancelled.')
                 return
         try:
             cmds = self.shell.find_user_code(codefrom,raw)
         except (TypeError, ValueError) as e:
             print(e.args[0])
             return
         out = py3compat.cast_unicode(cmds)
         with io.open(fname, mode, encoding="utf-8") as f:
             if not file_exists or not append:
                 f.write(u"# coding: utf-8\n")
             f.write(out)
             # make sure we end on a newline
             if not out.endswith(u'\n'):
                 f.write(u'\n')
         print('The following commands were written to file `%s`:' % fname)
         print(cmds)
 
     @line_magic
     def pastebin(self, parameter_s=''):
         """Upload code to Github's Gist paste bin, returning the URL.
 
         Usage:\\
           %pastebin [-d "Custom description"] 1-7
 
         The argument can be an input history range, a filename, or the name of a
         string or macro.
 
         Options:
 
           -d: Pass a custom description for the gist. The default will say
               "Pasted from IPython".
         """
         opts, args = self.parse_options(parameter_s, 'd:')
 
         try:
             code = self.shell.find_user_code(args)
         except (ValueError, TypeError) as e:
             print(e.args[0])
             return
 
         # Deferred import
         try:
             from urllib.request import urlopen # Py 3
         except ImportError:
             from urllib2 import urlopen
         import json
         post_data = json.dumps({
           "description": opts.get('d', "Pasted from IPython"),
           "public": True,
           "files": {
             "file1.py": {
               "content": code
             }
           }
         }).encode('utf-8')
 
         response = urlopen("https://api.github.com/gists", post_data)
         response_data = json.loads(response.read().decode('utf-8'))
         return response_data['html_url']
 
     @line_magic
     def loadpy(self, arg_s):
         """Alias of `%load`
 
         `%loadpy` has gained some flexibility and dropped the requirement of a `.py`
         extension. So it has been renamed simply into %load. You can look at
         `%load`'s docstring for more info.
         """
         self.load(arg_s)
 
     @line_magic
     def load(self, arg_s):
         """Load code into the current frontend.
 
         Usage:\\
           %load [options] source
 
           where source can be a filename, URL, input history range or macro
 
         Options:
-        --------
+
           -r <lines>: Specify lines or ranges of lines to load from the source.
           Ranges could be specified as x-y (x..y) or in python-style x:y 
           (x..(y-1)). Both limits x and y can be left blank (meaning the 
           beginning and end of the file, respectively).
 
           -s <symbols>: Specify function or classes to load from python source. 
 
           -y : Don't ask confirmation for loading source above 200 000 characters.
 
         This magic command can either take a local filename, a URL, an history
         range (see %history) or a macro as argument, it will prompt for
         confirmation before loading source with more than 200 000 characters, unless
         -y flag is passed or if the frontend does not support raw_input::
 
         %load myscript.py
         %load 7-27
         %load myMacro
         %load http://www.example.com/myscript.py
         %load -r 5-10 myscript.py
         %load -r 10-20,30,40: foo.py
         %load -s MyClass,wonder_function myscript.py
         """
         opts,args = self.parse_options(arg_s,'ys:r:')
 
         if not args:
             raise UsageError('Missing filename, URL, input history range, '
                              'or macro.')
 
         contents = self.shell.find_user_code(args)
 
         if 's' in opts:
             try:
                 blocks, not_found = extract_symbols(contents, opts['s'])
             except SyntaxError:
                 # non python code
                 error("Unable to parse the input as valid Python code")
                 return
 
             if len(not_found) == 1:
                 warn('The symbol `%s` was not found' % not_found[0])
             elif len(not_found) > 1:
                 warn('The symbols %s were not found' % get_text_list(not_found,
                                                                      wrap_item_with='`')
                 )
 
             contents = '\n'.join(blocks)
 
         if 'r' in opts:
             ranges = opts['r'].replace(',', ' ')
             lines = contents.split('\n')
             slices = extract_code_ranges(ranges)
             contents = [lines[slice(*slc)] for slc in slices]
             contents = '\n'.join(chain.from_iterable(contents))
 
         l = len(contents)
 
         # 200 000 is ~ 2500 full 80 caracter lines
         # so in average, more than 5000 lines
         if l > 200000 and 'y' not in opts:
             try:
                 ans = self.shell.ask_yes_no(("The text you're trying to load seems pretty big"\
                 " (%d characters). Continue (y/[N]) ?" % l), default='n' )
             except StdinNotImplementedError:
                 #asume yes if raw input not implemented
                 ans = True
 
             if ans is False :
                 print('Operation cancelled.')
                 return
 
         self.shell.set_next_input(contents)
 
     @staticmethod
     def _find_edit_target(shell, args, opts, last_call):
         """Utility method used by magic_edit to find what to edit."""
 
         def make_filename(arg):
             "Make a filename from the given args"
             arg = unquote_filename(arg)
             try:
                 filename = get_py_filename(arg)
             except IOError:
                 # If it ends with .py but doesn't already exist, assume we want
                 # a new file.
                 if arg.endswith('.py'):
                     filename = arg
                 else:
                     filename = None
             return filename
 
         # Set a few locals from the options for convenience:
         opts_prev = 'p' in opts
         opts_raw = 'r' in opts
 
         # custom exceptions
         class DataIsObject(Exception): pass
 
         # Default line number value
         lineno = opts.get('n',None)
 
         if opts_prev:
             args = '_%s' % last_call[0]
             if args not in shell.user_ns:
                 args = last_call[1]
 
         # by default this is done with temp files, except when the given
         # arg is a filename
         use_temp = True
 
         data = ''
 
         # First, see if the arguments should be a filename.
         filename = make_filename(args)
         if filename:
             use_temp = False
         elif args:
             # Mode where user specifies ranges of lines, like in %macro.
             data = shell.extract_input_lines(args, opts_raw)
             if not data:
                 try:
                     # Load the parameter given as a variable. If not a string,
                     # process it as an object instead (below)
 
                     #print '*** args',args,'type',type(args)  # dbg
                     data = eval(args, shell.user_ns)
                     if not isinstance(data, string_types):
                         raise DataIsObject
 
                 except (NameError,SyntaxError):
                     # given argument is not a variable, try as a filename
                     filename = make_filename(args)
                     if filename is None:
                         warn("Argument given (%s) can't be found as a variable "
                              "or as a filename." % args)
                         return (None, None, None)
                     use_temp = False
 
                 except DataIsObject:
                     # macros have a special edit function
                     if isinstance(data, Macro):
                         raise MacroToEdit(data)
 
                     # For objects, try to edit the file where they are defined
                     filename = find_file(data)
                     if filename:
                         if 'fakemodule' in filename.lower() and \
                             inspect.isclass(data):
                             # class created by %edit? Try to find source
                             # by looking for method definitions instead, the
                             # __module__ in those classes is FakeModule.
                             attrs = [getattr(data, aname) for aname in dir(data)]
                             for attr in attrs:
                                 if not inspect.ismethod(attr):
                                     continue
                                 filename = find_file(attr)
                                 if filename and \
                                   'fakemodule' not in filename.lower():
                                     # change the attribute to be the edit
                                     # target instead
                                     data = attr
                                     break
                         
                         m = ipython_input_pat.match(os.path.basename(filename))
                         if m:
                             raise InteractivelyDefined(int(m.groups()[0]))
                         
                         datafile = 1
                     if filename is None:
                         filename = make_filename(args)
                         datafile = 1
                         if filename is not None:
                             # only warn about this if we get a real name
                             warn('Could not find file where `%s` is defined.\n'
                              'Opening a file named `%s`' % (args, filename))
                     # Now, make sure we can actually read the source (if it was
                     # in a temp file it's gone by now).
                     if datafile:
                         if lineno is None:
                             lineno = find_source_lines(data)
                         if lineno is None:
                             filename = make_filename(args)
                             if filename is None:
                                 warn('The file where `%s` was defined '
                                      'cannot be read or found.' % data)
                                 return (None, None, None)
                     use_temp = False
 
         if use_temp:
             filename = shell.mktempfile(data)
             print('IPython will make a temporary file named:',filename)
 
         # use last_call to remember the state of the previous call, but don't
         # let it be clobbered by successive '-p' calls.
         try:
             last_call[0] = shell.displayhook.prompt_count
             if not opts_prev:
                 last_call[1] = args
         except:
             pass
 
 
         return filename, lineno, use_temp
 
     def _edit_macro(self,mname,macro):
         """open an editor with the macro data in a file"""
         filename = self.shell.mktempfile(macro.value)
         self.shell.hooks.editor(filename)
 
         # and make a new macro object, to replace the old one
         with open(filename) as mfile:
             mvalue = mfile.read()
         self.shell.user_ns[mname] = Macro(mvalue)
 
     @skip_doctest
     @line_magic
     def edit(self, parameter_s='',last_call=['','']):
         """Bring up an editor and execute the resulting code.
 
         Usage:
           %edit [options] [args]
 
         %edit runs IPython's editor hook. The default version of this hook is
         set to call the editor specified by your $EDITOR environment variable.
         If this isn't found, it will default to vi under Linux/Unix and to
         notepad under Windows. See the end of this docstring for how to change
         the editor hook.
 
         You can also set the value of this editor via the
         ``TerminalInteractiveShell.editor`` option in your configuration file.
         This is useful if you wish to use a different editor from your typical
         default with IPython (and for Windows users who typically don't set
         environment variables).
 
         This command allows you to conveniently edit multi-line code right in
         your IPython session.
 
         If called without arguments, %edit opens up an empty editor with a
         temporary file and will execute the contents of this file when you
         close it (don't forget to save it!).
 
 
         Options:
 
         -n <number>: open the editor at a specified line number.  By default,
         the IPython editor hook uses the unix syntax 'editor +N filename', but
         you can configure this by providing your own modified hook if your
         favorite editor supports line-number specifications with a different
         syntax.
 
         -p: this will call the editor with the same data as the previous time
         it was used, regardless of how long ago (in your current session) it
         was.
 
         -r: use 'raw' input.  This option only applies to input taken from the
         user's history.  By default, the 'processed' history is used, so that
         magics are loaded in their transformed version to valid Python.  If
         this option is given, the raw input as typed as the command line is
         used instead.  When you exit the editor, it will be executed by
         IPython's own processor.
 
         -x: do not execute the edited code immediately upon exit. This is
         mainly useful if you are editing programs which need to be called with
         command line arguments, which you can then do using %run.
 
 
         Arguments:
 
         If arguments are given, the following possibilities exist:
 
         - If the argument is a filename, IPython will load that into the
           editor. It will execute its contents with execfile() when you exit,
           loading any code in the file into your interactive namespace.
 
         - The arguments are ranges of input history,  e.g. "7 ~1/4-6".
           The syntax is the same as in the %history magic.
 
         - If the argument is a string variable, its contents are loaded
           into the editor. You can thus edit any string which contains
           python code (including the result of previous edits).
 
         - If the argument is the name of an object (other than a string),
           IPython will try to locate the file where it was defined and open the
           editor at the point where it is defined. You can use `%edit function`
           to load an editor exactly at the point where 'function' is defined,
           edit it and have the file be executed automatically.
 
         - If the object is a macro (see %macro for details), this opens up your
           specified editor with a temporary file containing the macro's data.
           Upon exit, the macro is reloaded with the contents of the file.
 
         Note: opening at an exact line is only supported under Unix, and some
         editors (like kedit and gedit up to Gnome 2.8) do not understand the
         '+NUMBER' parameter necessary for this feature. Good editors like
         (X)Emacs, vi, jed, pico and joe all do.
 
         After executing your code, %edit will return as output the code you
         typed in the editor (except when it was an existing file). This way
         you can reload the code in further invocations of %edit as a variable,
         via _<NUMBER> or Out[<NUMBER>], where <NUMBER> is the prompt number of
         the output.
 
         Note that %edit is also available through the alias %ed.
 
         This is an example of creating a simple function inside the editor and
         then modifying it. First, start up the editor::
 
           In [1]: edit
           Editing... done. Executing edited code...
           Out[1]: 'def foo():\\n    print "foo() was defined in an editing
           session"\\n'
 
         We can then call the function foo()::
 
           In [2]: foo()
           foo() was defined in an editing session
 
         Now we edit foo.  IPython automatically loads the editor with the
         (temporary) file where foo() was previously defined::
 
           In [3]: edit foo
           Editing... done. Executing edited code...
 
         And if we call foo() again we get the modified version::
 
           In [4]: foo()
           foo() has now been changed!
 
         Here is an example of how to edit a code snippet successive
         times. First we call the editor::
 
           In [5]: edit
           Editing... done. Executing edited code...
           hello
           Out[5]: "print 'hello'\\n"
 
         Now we call it again with the previous output (stored in _)::
 
           In [6]: edit _
           Editing... done. Executing edited code...
           hello world
           Out[6]: "print 'hello world'\\n"
 
         Now we call it with the output #8 (stored in _8, also as Out[8])::
 
           In [7]: edit _8
           Editing... done. Executing edited code...
           hello again
           Out[7]: "print 'hello again'\\n"
 
 
         Changing the default editor hook:
 
         If you wish to write your own editor hook, you can put it in a
         configuration file which you load at startup time.  The default hook
         is defined in the IPython.core.hooks module, and you can use that as a
         starting example for further modifications.  That file also has
         general instructions on how to set a new hook for use once you've
         defined it."""
         opts,args = self.parse_options(parameter_s,'prxn:')
 
         try:
             filename, lineno, is_temp = self._find_edit_target(self.shell, 
                                                        args, opts, last_call)
         except MacroToEdit as e:
             self._edit_macro(args, e.args[0])
             return
         except InteractivelyDefined as e:
             print("Editing In[%i]" % e.index)
             args = str(e.index)
             filename, lineno, is_temp = self._find_edit_target(self.shell, 
                                                        args, opts, last_call)
         if filename is None:
             # nothing was found, warnings have already been issued,
             # just give up.
             return
 
         # do actual editing here
         print('Editing...', end=' ')
         sys.stdout.flush()
         try:
             # Quote filenames that may have spaces in them
             if ' ' in filename:
                 filename = "'%s'" % filename
             self.shell.hooks.editor(filename,lineno)
         except TryNext:
             warn('Could not open editor')
             return
 
         # XXX TODO: should this be generalized for all string vars?
         # For now, this is special-cased to blocks created by cpaste
         if args.strip() == 'pasted_block':
             with open(filename, 'r') as f:
                 self.shell.user_ns['pasted_block'] = f.read()
 
         if 'x' in opts:  # -x prevents actual execution
             print()
         else:
             print('done. Executing edited code...')
             with preserve_keys(self.shell.user_ns, '__file__'):
                 if not is_temp:
                     self.shell.user_ns['__file__'] = filename
                 if 'r' in opts:    # Untranslated IPython code
                     with open(filename, 'r') as f:
                         source = f.read()
                     self.shell.run_cell(source, store_history=False)
                 else:
                     self.shell.safe_execfile(filename, self.shell.user_ns,
                                              self.shell.user_ns)
 
         if is_temp:
             try:
                 return open(filename).read()
             except IOError as msg:
                 if msg.filename == filename:
                     warn('File not found. Did you forget to save?')
                     return
                 else:
                     self.shell.showtraceback()

IPython/core/tests/test_magic_arguments.py

@@ -1,118 +1,118 b''
 #-----------------------------------------------------------------------------
 # Copyright (C) 2010-2011, IPython Development Team.
 #
 # Distributed under the terms of the Modified BSD License.
 #
 # The full license is in the file COPYING.txt, distributed with this software.
 #-----------------------------------------------------------------------------
 
 import argparse
 from nose.tools import assert_equal
 
 from IPython.core.magic_arguments import (argument, argument_group, kwds,
     magic_arguments, parse_argstring, real_name)
 
 
 @magic_arguments()
 @argument('-f', '--foo', help="an argument")
 def magic_foo1(self, args):
     """ A docstring.
     """
     return parse_argstring(magic_foo1, args)
 
 
 @magic_arguments()
 def magic_foo2(self, args):
     """ A docstring.
     """
     return parse_argstring(magic_foo2, args)
 
 
 @magic_arguments()
 @argument('-f', '--foo', help="an argument")
 @argument_group('Group')
 @argument('-b', '--bar', help="a grouped argument")
 @argument_group('Second Group')
 @argument('-z', '--baz', help="another grouped argument")
 def magic_foo3(self, args):
     """ A docstring.
     """
     return parse_argstring(magic_foo3, args)
 
 
 @magic_arguments()
 @kwds(argument_default=argparse.SUPPRESS)
 @argument('-f', '--foo', help="an argument")
 def magic_foo4(self, args):
     """ A docstring.
     """
     return parse_argstring(magic_foo4, args)
 
 
 @magic_arguments('frobnicate')
 @argument('-f', '--foo', help="an argument")
 def magic_foo5(self, args):
     """ A docstring.
     """
     return parse_argstring(magic_foo5, args)
 
 
 @magic_arguments()
 @argument('-f', '--foo', help="an argument")
 def magic_magic_foo(self, args):
     """ A docstring.
     """
     return parse_argstring(magic_magic_foo, args)
 
 
 @magic_arguments()
 @argument('-f', '--foo', help="an argument")
 def foo(self, args):
     """ A docstring.
     """
     return parse_argstring(foo, args)
 
 
 def test_magic_arguments():
-    assert_equal(magic_foo1.__doc__, '%foo1 [-f FOO]\n\n A docstring.\n\noptional arguments:\n  -f FOO, --foo FOO  an argument\n')
+    assert_equal(magic_foo1.__doc__, '::\n\n  %foo1 [-f FOO]\n\n A docstring.\n\noptional arguments:\n  -f FOO, --foo FOO  an argument\n')
     assert_equal(getattr(magic_foo1, 'argcmd_name', None), None)
     assert_equal(real_name(magic_foo1), 'foo1')
     assert_equal(magic_foo1(None, ''), argparse.Namespace(foo=None))
     assert hasattr(magic_foo1, 'has_arguments')
 
-    assert_equal(magic_foo2.__doc__, '%foo2\n\n A docstring.\n')
+    assert_equal(magic_foo2.__doc__, '::\n\n  %foo2\n\n A docstring.\n')
     assert_equal(getattr(magic_foo2, 'argcmd_name', None), None)
     assert_equal(real_name(magic_foo2), 'foo2')
     assert_equal(magic_foo2(None, ''), argparse.Namespace())
     assert hasattr(magic_foo2, 'has_arguments')
 
-    assert_equal(magic_foo3.__doc__, '%foo3 [-f FOO] [-b BAR] [-z BAZ]\n\n A docstring.\n\noptional arguments:\n  -f FOO, --foo FOO  an argument\n\nGroup:\n  -b BAR, --bar BAR  a grouped argument\n\nSecond Group:\n  -z BAZ, --baz BAZ  another grouped argument\n')
+    assert_equal(magic_foo3.__doc__, '::\n\n  %foo3 [-f FOO] [-b BAR] [-z BAZ]\n\n A docstring.\n\noptional arguments:\n  -f FOO, --foo FOO  an argument\n\nGroup:\n  -b BAR, --bar BAR  a grouped argument\n\nSecond Group:\n  -z BAZ, --baz BAZ  another grouped argument\n')
     assert_equal(getattr(magic_foo3, 'argcmd_name', None), None)
     assert_equal(real_name(magic_foo3), 'foo3')
     assert_equal(magic_foo3(None, ''),
                        argparse.Namespace(bar=None, baz=None, foo=None))
     assert hasattr(magic_foo3, 'has_arguments')
 
-    assert_equal(magic_foo4.__doc__, '%foo4 [-f FOO]\n\n A docstring.\n\noptional arguments:\n  -f FOO, --foo FOO  an argument\n')
+    assert_equal(magic_foo4.__doc__, '::\n\n  %foo4 [-f FOO]\n\n A docstring.\n\noptional arguments:\n  -f FOO, --foo FOO  an argument\n')
     assert_equal(getattr(magic_foo4, 'argcmd_name', None), None)
     assert_equal(real_name(magic_foo4), 'foo4')
     assert_equal(magic_foo4(None, ''), argparse.Namespace())
     assert hasattr(magic_foo4, 'has_arguments')
 
-    assert_equal(magic_foo5.__doc__, '%frobnicate [-f FOO]\n\n A docstring.\n\noptional arguments:\n  -f FOO, --foo FOO  an argument\n')
+    assert_equal(magic_foo5.__doc__, '::\n\n  %frobnicate [-f FOO]\n\n A docstring.\n\noptional arguments:\n  -f FOO, --foo FOO  an argument\n')
     assert_equal(getattr(magic_foo5, 'argcmd_name', None), 'frobnicate')
     assert_equal(real_name(magic_foo5), 'frobnicate')
     assert_equal(magic_foo5(None, ''), argparse.Namespace(foo=None))
     assert hasattr(magic_foo5, 'has_arguments')
 
-    assert_equal(magic_magic_foo.__doc__, '%magic_foo [-f FOO]\n\n A docstring.\n\noptional arguments:\n  -f FOO, --foo FOO  an argument\n')
+    assert_equal(magic_magic_foo.__doc__, '::\n\n  %magic_foo [-f FOO]\n\n A docstring.\n\noptional arguments:\n  -f FOO, --foo FOO  an argument\n')
     assert_equal(getattr(magic_magic_foo, 'argcmd_name', None), None)
     assert_equal(real_name(magic_magic_foo), 'magic_foo')
     assert_equal(magic_magic_foo(None, ''), argparse.Namespace(foo=None))
     assert hasattr(magic_magic_foo, 'has_arguments')
 
-    assert_equal(foo.__doc__, '%foo [-f FOO]\n\n A docstring.\n\noptional arguments:\n  -f FOO, --foo FOO  an argument\n')
+    assert_equal(foo.__doc__, '::\n\n  %foo [-f FOO]\n\n A docstring.\n\noptional arguments:\n  -f FOO, --foo FOO  an argument\n')
     assert_equal(getattr(foo, 'argcmd_name', None), None)
     assert_equal(real_name(foo), 'foo')
     assert_equal(foo(None, ''), argparse.Namespace(foo=None))
     assert hasattr(foo, 'has_arguments')

IPython/core/ultratb.py

@@ -1,1267 +1,1269 b''
 # -*- coding: utf-8 -*-
 """
 ultratb.py -- Spice up your tracebacks!
 
-* ColorTB
+**ColorTB**
+
 I've always found it a bit hard to visually parse tracebacks in Python.  The
 ColorTB class is a solution to that problem.  It colors the different parts of a
 traceback in a manner similar to what you would expect from a syntax-highlighting
 text editor.
 
 Installation instructions for ColorTB::
 
     import sys,ultratb
     sys.excepthook = ultratb.ColorTB()
 
-* VerboseTB
+**VerboseTB**
+
 I've also included a port of Ka-Ping Yee's "cgitb.py" that produces all kinds
 of useful info when a traceback occurs.  Ping originally had it spit out HTML
 and intended it for CGI programmers, but why should they have all the fun?  I
 altered it to spit out colored text to the terminal.  It's a bit overwhelming,
 but kind of neat, and maybe useful for long-running programs that you believe
 are bug-free.  If a crash *does* occur in that type of program you want details.
 Give it a shot--you'll love it or you'll hate it.
 
 .. note::
 
   The Verbose mode prints the variables currently visible where the exception
   happened (shortening their strings if too long). This can potentially be
   very slow, if you happen to have a huge data structure whose string
   representation is complex to compute. Your computer may appear to freeze for
   a while with cpu usage at 100%. If this occurs, you can cancel the traceback
   with Ctrl-C (maybe hitting it more than once).
 
   If you encounter this kind of situation often, you may want to use the
   Verbose_novars mode instead of the regular Verbose, which avoids formatting
   variables (but otherwise includes the information and context given by
   Verbose).
 
 
 Installation instructions for ColorTB::
 
     import sys,ultratb
     sys.excepthook = ultratb.VerboseTB()
 
 Note:  Much of the code in this module was lifted verbatim from the standard
 library module 'traceback.py' and Ka-Ping Yee's 'cgitb.py'.
 
 Color schemes
 -------------
 
 The colors are defined in the class TBTools through the use of the
 ColorSchemeTable class. Currently the following exist:
 
   - NoColor: allows all of this module to be used in any terminal (the color
     escapes are just dummy blank strings).
 
   - Linux: is meant to look good in a terminal like the Linux console (black
     or very dark background).
 
   - LightBG: similar to Linux but swaps dark/light colors to be more readable
     in light background terminals.
 
 You can implement other color schemes easily, the syntax is fairly
 self-explanatory. Please send back new schemes you develop to the author for
 possible inclusion in future releases.
 
 Inheritance diagram:
 
 .. inheritance-diagram:: IPython.core.ultratb
    :parts: 3
 """
 
 #*****************************************************************************
 #       Copyright (C) 2001 Nathaniel Gray <[e-mail]>
 #       Copyright (C) 2001-2004 Fernando Perez <[e-mail]>
 #
 #  Distributed under the terms of the BSD License.  The full license is in
 #  the file COPYING, distributed as part of this software.
 #*****************************************************************************
 
 from __future__ import unicode_literals
 from __future__ import print_function
 
 import inspect
 import keyword
 import linecache
 import os
 import pydoc
 import re
 import sys
 import time
 import tokenize
 import traceback
 import types
 
 try:                           # Python 2
     generate_tokens = tokenize.generate_tokens
 except AttributeError:         # Python 3
     generate_tokens = tokenize.tokenize
 
 # For purposes of monkeypatching inspect to fix a bug in it.
 from inspect import getsourcefile, getfile, getmodule,\
      ismodule, isclass, ismethod, isfunction, istraceback, isframe, iscode
 
 # IPython's own modules
 # Modified pdb which doesn't damage IPython's readline handling
 from IPython import get_ipython
 from IPython.core import debugger
 from IPython.core.display_trap import DisplayTrap
 from IPython.core.excolors import exception_colors
 from IPython.utils import PyColorize
 from IPython.utils import io
 from IPython.utils import openpy
 from IPython.utils import path as util_path
 from IPython.utils import py3compat
 from IPython.utils import ulinecache
 from IPython.utils.data import uniq_stable
 from IPython.utils.warn import info, error
 
 # Globals
 # amount of space to put line numbers before verbose tracebacks
 INDENT_SIZE = 8
 
 # Default color scheme.  This is used, for example, by the traceback
 # formatter.  When running in an actual IPython instance, the user's rc.colors
 # value is used, but havinga module global makes this functionality available
 # to users of ultratb who are NOT running inside ipython.
 DEFAULT_SCHEME = 'NoColor'
 
 #---------------------------------------------------------------------------
 # Code begins
 
 # Utility functions
 def inspect_error():
     """Print a message about internal inspect errors.
 
     These are unfortunately quite common."""
 
     error('Internal Python error in the inspect module.\n'
           'Below is the traceback from this internal error.\n')
 
 # This function is a monkeypatch we apply to the Python inspect module. We have
 # now found when it's needed (see discussion on issue gh-1456), and we have a
 # test case (IPython.core.tests.test_ultratb.ChangedPyFileTest) that fails if
 # the monkeypatch is not applied. TK, Aug 2012.
 def findsource(object):
     """Return the entire source file and starting line number for an object.
 
     The argument may be a module, class, method, function, traceback, frame,
     or code object.  The source code is returned as a list of all the lines
     in the file and the line number indexes a line in that list.  An IOError
     is raised if the source code cannot be retrieved.
 
     FIXED version with which we monkeypatch the stdlib to work around a bug."""
 
     file = getsourcefile(object) or getfile(object)
     # If the object is a frame, then trying to get the globals dict from its
     # module won't work. Instead, the frame object itself has the globals
     # dictionary.
     globals_dict = None
     if inspect.isframe(object):
         # XXX: can this ever be false?
         globals_dict = object.f_globals
     else:
         module = getmodule(object, file)
         if module:
             globals_dict = module.__dict__
     lines = linecache.getlines(file, globals_dict)
     if not lines:
         raise IOError('could not get source code')
 
     if ismodule(object):
         return lines, 0
 
     if isclass(object):
         name = object.__name__
         pat = re.compile(r'^(\s*)class\s*' + name + r'\b')
         # make some effort to find the best matching class definition:
         # use the one with the least indentation, which is the one
         # that's most probably not inside a function definition.
         candidates = []
         for i in range(len(lines)):
             match = pat.match(lines[i])
             if match:
                 # if it's at toplevel, it's already the best one
                 if lines[i][0] == 'c':
                     return lines, i
                 # else add whitespace to candidate list
                 candidates.append((match.group(1), i))
         if candidates:
             # this will sort by whitespace, and by line number,
             # less whitespace first
             candidates.sort()
             return lines, candidates[0][1]
         else:
             raise IOError('could not find class definition')
 
     if ismethod(object):
         object = object.__func__
     if isfunction(object):
         object = object.__code__
     if istraceback(object):
         object = object.tb_frame
     if isframe(object):
         object = object.f_code
     if iscode(object):
         if not hasattr(object, 'co_firstlineno'):
             raise IOError('could not find function definition')
         pat = re.compile(r'^(\s*def\s)|(.*(?<!\w)lambda(:|\s))|^(\s*@)')
         pmatch = pat.match
         # fperez - fix: sometimes, co_firstlineno can give a number larger than
         # the length of lines, which causes an error.  Safeguard against that.
         lnum = min(object.co_firstlineno,len(lines))-1
         while lnum > 0:
             if pmatch(lines[lnum]): break
             lnum -= 1
 
         return lines, lnum
     raise IOError('could not find code object')
 
 # Monkeypatch inspect to apply our bugfix.  This code only works with Python >= 2.5
 inspect.findsource = findsource
 
 def fix_frame_records_filenames(records):
     """Try to fix the filenames in each record from inspect.getinnerframes().
 
     Particularly, modules loaded from within zip files have useless filenames
     attached to their code object, and inspect.getinnerframes() just uses it.
     """
     fixed_records = []
     for frame, filename, line_no, func_name, lines, index in records:
         # Look inside the frame's globals dictionary for __file__, which should
         # be better.
         better_fn = frame.f_globals.get('__file__', None)
         if isinstance(better_fn, str):
             # Check the type just in case someone did something weird with
             # __file__. It might also be None if the error occurred during
             # import.
             filename = better_fn
         fixed_records.append((frame, filename, line_no, func_name, lines, index))
     return fixed_records
 
 
 def _fixed_getinnerframes(etb, context=1,tb_offset=0):
     LNUM_POS, LINES_POS, INDEX_POS =  2, 4, 5
 
     records  = fix_frame_records_filenames(inspect.getinnerframes(etb, context))
 
     # If the error is at the console, don't build any context, since it would
     # otherwise produce 5 blank lines printed out (there is no file at the
     # console)
     rec_check = records[tb_offset:]
     try:
         rname = rec_check[0][1]
         if rname == '<ipython console>' or rname.endswith('<string>'):
             return rec_check
     except IndexError:
         pass
 
     aux = traceback.extract_tb(etb)
     assert len(records) == len(aux)
     for i, (file, lnum, _, _) in zip(range(len(records)), aux):
         maybeStart = lnum-1 - context//2
         start =  max(maybeStart, 0)
         end   = start + context
         lines = ulinecache.getlines(file)[start:end]
         buf = list(records[i])
         buf[LNUM_POS] = lnum
         buf[INDEX_POS] = lnum - 1 - start
         buf[LINES_POS] = lines
         records[i] = tuple(buf)
     return records[tb_offset:]
 
 # Helper function -- largely belongs to VerboseTB, but we need the same
 # functionality to produce a pseudo verbose TB for SyntaxErrors, so that they
 # can be recognized properly by ipython.el's py-traceback-line-re
 # (SyntaxErrors have to be treated specially because they have no traceback)
 
 _parser = PyColorize.Parser()
 
 def _format_traceback_lines(lnum, index, lines, Colors, lvals=None,scheme=None):
     numbers_width = INDENT_SIZE - 1
     res = []
     i = lnum - index
 
     # This lets us get fully syntax-highlighted tracebacks.
     if scheme is None:
         ipinst = get_ipython()
         if ipinst is not None:
             scheme = ipinst.colors
         else:
             scheme = DEFAULT_SCHEME
 
     _line_format = _parser.format2
 
     for line in lines:
         line = py3compat.cast_unicode(line)
 
         new_line, err = _line_format(line, 'str', scheme)
         if not err: line = new_line
 
         if i == lnum:
             # This is the line with the error
             pad = numbers_width - len(str(i))
             if pad >= 3:
                 marker = '-'*(pad-3) + '-> '
             elif pad == 2:
                 marker = '> '
             elif pad == 1:
                 marker = '>'
             else:
                 marker = ''
             num = marker + str(i)
             line = '%s%s%s %s%s' %(Colors.linenoEm, num,
                                    Colors.line, line, Colors.Normal)
         else:
             num = '%*s' % (numbers_width,i)
             line = '%s%s%s %s' %(Colors.lineno, num,
                                  Colors.Normal, line)
 
         res.append(line)
         if lvals and i == lnum:
             res.append(lvals + '\n')
         i = i + 1
     return res
 
 
 #---------------------------------------------------------------------------
 # Module classes
 class TBTools(object):
     """Basic tools used by all traceback printer classes."""
 
     # Number of frames to skip when reporting tracebacks
     tb_offset = 0
 
     def __init__(self, color_scheme='NoColor', call_pdb=False, ostream=None):
         # Whether to call the interactive pdb debugger after printing
         # tracebacks or not
         self.call_pdb = call_pdb
 
         # Output stream to write to.  Note that we store the original value in
         # a private attribute and then make the public ostream a property, so
         # that we can delay accessing io.stdout until runtime.  The way
         # things are written now, the io.stdout object is dynamically managed
         # so a reference to it should NEVER be stored statically.  This
         # property approach confines this detail to a single location, and all
         # subclasses can simply access self.ostream for writing.
         self._ostream = ostream
 
         # Create color table
         self.color_scheme_table = exception_colors()
 
         self.set_colors(color_scheme)
         self.old_scheme = color_scheme  # save initial value for toggles
 
         if call_pdb:
             self.pdb = debugger.Pdb(self.color_scheme_table.active_scheme_name)
         else:
             self.pdb = None
 
     def _get_ostream(self):
         """Output stream that exceptions are written to.
 
         Valid values are:
 
         - None: the default, which means that IPython will dynamically resolve
           to io.stdout.  This ensures compatibility with most tools, including
           Windows (where plain stdout doesn't recognize ANSI escapes).
 
         - Any object with 'write' and 'flush' attributes.
         """
         return io.stdout if self._ostream is None else self._ostream
 
     def _set_ostream(self, val):
         assert val is None or (hasattr(val, 'write') and hasattr(val, 'flush'))
         self._ostream = val
 
     ostream = property(_get_ostream, _set_ostream)
 
     def set_colors(self,*args,**kw):
         """Shorthand access to the color table scheme selector method."""
 
         # Set own color table
         self.color_scheme_table.set_active_scheme(*args,**kw)
         # for convenience, set Colors to the active scheme
         self.Colors = self.color_scheme_table.active_colors
         # Also set colors of debugger
         if hasattr(self,'pdb') and self.pdb is not None:
             self.pdb.set_colors(*args,**kw)
 
     def color_toggle(self):
         """Toggle between the currently active color scheme and NoColor."""
 
         if self.color_scheme_table.active_scheme_name == 'NoColor':
             self.color_scheme_table.set_active_scheme(self.old_scheme)
             self.Colors = self.color_scheme_table.active_colors
         else:
             self.old_scheme = self.color_scheme_table.active_scheme_name
             self.color_scheme_table.set_active_scheme('NoColor')
             self.Colors = self.color_scheme_table.active_colors
 
     def stb2text(self, stb):
         """Convert a structured traceback (a list) to a string."""
         return '\n'.join(stb)
 
     def text(self, etype, value, tb, tb_offset=None, context=5):
         """Return formatted traceback.
 
         Subclasses may override this if they add extra arguments.
         """
         tb_list = self.structured_traceback(etype, value, tb,
                                             tb_offset, context)
         return self.stb2text(tb_list)
 
     def structured_traceback(self, etype, evalue, tb, tb_offset=None,
                              context=5, mode=None):
         """Return a list of traceback frames.
 
         Must be implemented by each class.
         """
         raise NotImplementedError()
 
 
 #---------------------------------------------------------------------------
 class ListTB(TBTools):
     """Print traceback information from a traceback list, with optional color.
 
     Calling requires 3 arguments: (etype, evalue, elist)
     as would be obtained by::
     
       etype, evalue, tb = sys.exc_info()
       if tb:
         elist = traceback.extract_tb(tb)
       else:
         elist = None
 
     It can thus be used by programs which need to process the traceback before
     printing (such as console replacements based on the code module from the
     standard library).
 
     Because they are meant to be called without a full traceback (only a
     list), instances of this class can't call the interactive pdb debugger."""
 
     def __init__(self,color_scheme = 'NoColor', call_pdb=False, ostream=None):
         TBTools.__init__(self, color_scheme=color_scheme, call_pdb=call_pdb,
                          ostream=ostream)
 
     def __call__(self, etype, value, elist):
         self.ostream.flush()
         self.ostream.write(self.text(etype, value, elist))
         self.ostream.write('\n')
 
     def structured_traceback(self, etype, value, elist, tb_offset=None,
                              context=5):
         """Return a color formatted string with the traceback info.
 
         Parameters
         ----------
         etype : exception type
           Type of the exception raised.
 
         value : object
           Data stored in the exception
 
         elist : list
           List of frames, see class docstring for details.
 
         tb_offset : int, optional
           Number of frames in the traceback to skip.  If not given, the
           instance value is used (set in constructor).
 
         context : int, optional
           Number of lines of context information to print.
 
         Returns
         -------
         String with formatted exception.
         """
         tb_offset = self.tb_offset if tb_offset is None else tb_offset
         Colors = self.Colors
         out_list = []
         if elist:
 
             if tb_offset and len(elist) > tb_offset:
                 elist = elist[tb_offset:]
 
             out_list.append('Traceback %s(most recent call last)%s:' %
                                 (Colors.normalEm, Colors.Normal) + '\n')
             out_list.extend(self._format_list(elist))
         # The exception info should be a single entry in the list.
         lines = ''.join(self._format_exception_only(etype, value))
         out_list.append(lines)
 
         # Note: this code originally read:
 
         ## for line in lines[:-1]:
         ##     out_list.append(" "+line)
         ## out_list.append(lines[-1])
 
         # This means it was indenting everything but the last line by a little
         # bit.  I've disabled this for now, but if we see ugliness somewhre we
         # can restore it.
 
         return out_list
 
     def _format_list(self, extracted_list):
         """Format a list of traceback entry tuples for printing.
 
         Given a list of tuples as returned by extract_tb() or
         extract_stack(), return a list of strings ready for printing.
         Each string in the resulting list corresponds to the item with the
         same index in the argument list.  Each string ends in a newline;
         the strings may contain internal newlines as well, for those items
         whose source text line is not None.
 
         Lifted almost verbatim from traceback.py
         """
 
         Colors = self.Colors
         list = []
         for filename, lineno, name, line in extracted_list[:-1]:
             item = '  File %s"%s"%s, line %s%d%s, in %s%s%s\n' % \
                     (Colors.filename, filename, Colors.Normal,
                      Colors.lineno, lineno, Colors.Normal,
                      Colors.name, name, Colors.Normal)
             if line:
                 item += '    %s\n' % line.strip()
             list.append(item)
         # Emphasize the last entry
         filename, lineno, name, line = extracted_list[-1]
         item = '%s  File %s"%s"%s, line %s%d%s, in %s%s%s%s\n' % \
                 (Colors.normalEm,
                  Colors.filenameEm, filename, Colors.normalEm,
                  Colors.linenoEm, lineno, Colors.normalEm,
                  Colors.nameEm, name, Colors.normalEm,
                  Colors.Normal)
         if line:
             item += '%s    %s%s\n' % (Colors.line, line.strip(),
                                             Colors.Normal)
         list.append(item)
         #from pprint import pformat; print 'LISTTB', pformat(list) # dbg
         return list
 
     def _format_exception_only(self, etype, value):
         """Format the exception part of a traceback.
 
         The arguments are the exception type and value such as given by
         sys.exc_info()[:2]. The return value is a list of strings, each ending
         in a newline.  Normally, the list contains a single string; however,
         for SyntaxError exceptions, it contains several lines that (when
         printed) display detailed information about where the syntax error
         occurred.  The message indicating which exception occurred is the
         always last string in the list.
 
         Also lifted nearly verbatim from traceback.py
         """
         have_filedata = False
         Colors = self.Colors
         list = []
         stype = Colors.excName + etype.__name__ + Colors.Normal
         if value is None:
             # Not sure if this can still happen in Python 2.6 and above
             list.append( py3compat.cast_unicode(stype) + '\n')
         else:
             if issubclass(etype, SyntaxError):
                 have_filedata = True
                 #print 'filename is',filename  # dbg
                 if not value.filename: value.filename = "<string>"
                 if value.lineno:
                     lineno = value.lineno
                     textline = ulinecache.getline(value.filename, value.lineno)
                 else:
                     lineno = 'unknown'
                     textline = ''
                 list.append('%s  File %s"%s"%s, line %s%s%s\n' % \
                         (Colors.normalEm,
                          Colors.filenameEm, py3compat.cast_unicode(value.filename), Colors.normalEm,
                          Colors.linenoEm, lineno, Colors.Normal  ))
                 if textline == '':
                     textline = py3compat.cast_unicode(value.text, "utf-8")
 
                 if textline is not None:
                     i = 0
                     while i < len(textline) and textline[i].isspace():
                         i += 1
                     list.append('%s    %s%s\n' % (Colors.line,
                                                   textline.strip(),
                                                   Colors.Normal))
                     if value.offset is not None:
                         s = '    '
                         for c in textline[i:value.offset-1]:
                             if c.isspace():
                                 s += c
                             else:
                                 s += ' '
                         list.append('%s%s^%s\n' % (Colors.caret, s,
                                                    Colors.Normal) )
 
             try:
                 s = value.msg
             except Exception:
                 s = self._some_str(value)
             if s:
                 list.append('%s%s:%s %s\n' % (str(stype), Colors.excName,
                                               Colors.Normal, s))
             else:
                 list.append('%s\n' % str(stype))
 
         # sync with user hooks
         if have_filedata:
             ipinst = get_ipython()
             if ipinst is not None:
                 ipinst.hooks.synchronize_with_editor(value.filename, value.lineno, 0)
 
         return list
 
     def get_exception_only(self, etype, value):
         """Only print the exception type and message, without a traceback.
 
         Parameters
         ----------
         etype : exception type
         value : exception value
         """
         return ListTB.structured_traceback(self, etype, value, [])
 
 
     def show_exception_only(self, etype, evalue):
         """Only print the exception type and message, without a traceback.
 
         Parameters
         ----------
         etype : exception type
         value : exception value
         """
         # This method needs to use __call__ from *this* class, not the one from
         # a subclass whose signature or behavior may be different
         ostream = self.ostream
         ostream.flush()
         ostream.write('\n'.join(self.get_exception_only(etype, evalue)))
         ostream.flush()
 
     def _some_str(self, value):
         # Lifted from traceback.py
         try:
             return str(value)
         except:
             return '<unprintable %s object>' % type(value).__name__
 
 #----------------------------------------------------------------------------
 class VerboseTB(TBTools):
     """A port of Ka-Ping Yee's cgitb.py module that outputs color text instead
     of HTML.  Requires inspect and pydoc.  Crazy, man.
 
     Modified version which optionally strips the topmost entries from the
     traceback, to be used with alternate interpreters (because their own code
     would appear in the traceback)."""
 
     def __init__(self,color_scheme = 'Linux', call_pdb=False, ostream=None,
                  tb_offset=0, long_header=False, include_vars=True,
                  check_cache=None):
         """Specify traceback offset, headers and color scheme.
 
         Define how many frames to drop from the tracebacks. Calling it with
         tb_offset=1 allows use of this handler in interpreters which will have
         their own code at the top of the traceback (VerboseTB will first
         remove that frame before printing the traceback info)."""
         TBTools.__init__(self, color_scheme=color_scheme, call_pdb=call_pdb,
                          ostream=ostream)
         self.tb_offset = tb_offset
         self.long_header = long_header
         self.include_vars = include_vars
         # By default we use linecache.checkcache, but the user can provide a
         # different check_cache implementation.  This is used by the IPython
         # kernel to provide tracebacks for interactive code that is cached,
         # by a compiler instance that flushes the linecache but preserves its
         # own code cache.
         if check_cache is None:
             check_cache = linecache.checkcache
         self.check_cache = check_cache
 
     def structured_traceback(self, etype, evalue, etb, tb_offset=None,
                              context=5):
         """Return a nice text document describing the traceback."""
 
         tb_offset = self.tb_offset if tb_offset is None else tb_offset
 
         # some locals
         try:
             etype = etype.__name__
         except AttributeError:
             pass
         Colors        = self.Colors   # just a shorthand + quicker name lookup
         ColorsNormal  = Colors.Normal  # used a lot
         col_scheme    = self.color_scheme_table.active_scheme_name
         indent        = ' '*INDENT_SIZE
         em_normal     = '%s\n%s%s' % (Colors.valEm, indent,ColorsNormal)
         undefined     = '%sundefined%s' % (Colors.em, ColorsNormal)
         exc = '%s%s%s' % (Colors.excName,etype,ColorsNormal)
 
         # some internal-use functions
         def text_repr(value):
             """Hopefully pretty robust repr equivalent."""
             # this is pretty horrible but should always return *something*
             try:
                 return pydoc.text.repr(value)
             except KeyboardInterrupt:
                 raise
             except:
                 try:
                     return repr(value)
                 except KeyboardInterrupt:
                     raise
                 except:
                     try:
                         # all still in an except block so we catch
                         # getattr raising
                         name = getattr(value, '__name__', None)
                         if name:
                             # ick, recursion
                             return text_repr(name)
                         klass = getattr(value, '__class__', None)
                         if klass:
                             return '%s instance' % text_repr(klass)
                     except KeyboardInterrupt:
                         raise
                     except:
                         return 'UNRECOVERABLE REPR FAILURE'
         def eqrepr(value, repr=text_repr): return '=%s' % repr(value)
         def nullrepr(value, repr=text_repr): return ''
 
         # meat of the code begins
         try:
             etype = etype.__name__
         except AttributeError:
             pass
 
         if self.long_header:
             # Header with the exception type, python version, and date
             pyver = 'Python ' + sys.version.split()[0] + ': ' + sys.executable
             date = time.ctime(time.time())
 
             head = '%s%s%s\n%s%s%s\n%s' % (Colors.topline, '-'*75, ColorsNormal,
                                            exc, ' '*(75-len(str(etype))-len(pyver)),
                                            pyver, date.rjust(75) )
             head += "\nA problem occured executing Python code.  Here is the sequence of function"\
                     "\ncalls leading up to the error, with the most recent (innermost) call last."
         else:
             # Simplified header
             head = '%s%s%s\n%s%s' % (Colors.topline, '-'*75, ColorsNormal,exc,
                                      'Traceback (most recent call last)'.\
                                                   rjust(75 - len(str(etype)) ) )
         frames = []
         # Flush cache before calling inspect.  This helps alleviate some of the
         # problems with python 2.3's inspect.py.
         ##self.check_cache()
         # Drop topmost frames if requested
         try:
             # Try the default getinnerframes and Alex's: Alex's fixes some
             # problems, but it generates empty tracebacks for console errors
             # (5 blanks lines) where none should be returned.
             #records = inspect.getinnerframes(etb, context)[tb_offset:]
             #print 'python records:', records # dbg
             records = _fixed_getinnerframes(etb, context, tb_offset)
             #print 'alex   records:', records # dbg
         except:
 
             # FIXME: I've been getting many crash reports from python 2.3
             # users, traceable to inspect.py.  If I can find a small test-case
             # to reproduce this, I should either write a better workaround or
             # file a bug report against inspect (if that's the real problem).
             # So far, I haven't been able to find an isolated example to
             # reproduce the problem.
             inspect_error()
             traceback.print_exc(file=self.ostream)
             info('\nUnfortunately, your original traceback can not be constructed.\n')
             return ''
 
         # build some color string templates outside these nested loops
         tpl_link       = '%s%%s%s' % (Colors.filenameEm,ColorsNormal)
         tpl_call       = 'in %s%%s%s%%s%s' % (Colors.vName, Colors.valEm,
                                               ColorsNormal)
         tpl_call_fail  = 'in %s%%s%s(***failed resolving arguments***)%s' % \
                          (Colors.vName, Colors.valEm, ColorsNormal)
         tpl_local_var  = '%s%%s%s' % (Colors.vName, ColorsNormal)
         tpl_global_var = '%sglobal%s %s%%s%s' % (Colors.em, ColorsNormal,
                                                  Colors.vName, ColorsNormal)
         tpl_name_val   = '%%s %s= %%s%s' % (Colors.valEm, ColorsNormal)
         tpl_line       = '%s%%s%s %%s' % (Colors.lineno, ColorsNormal)
         tpl_line_em    = '%s%%s%s %%s%s' % (Colors.linenoEm,Colors.line,
                                             ColorsNormal)
 
         # now, loop over all records printing context and info
         abspath = os.path.abspath
         for frame, file, lnum, func, lines, index in records:
             #print '*** record:',file,lnum,func,lines,index  # dbg
             if not file:
                 file = '?'
             elif not(file.startswith(str("<")) and file.endswith(str(">"))):
                 # Guess that filenames like <string> aren't real filenames, so
                 # don't call abspath on them.                    
                 try:
                     file = abspath(file)
                 except OSError:
                     # Not sure if this can still happen: abspath now works with
                     # file names like <string>
                     pass
             file = py3compat.cast_unicode(file, util_path.fs_encoding)
             link = tpl_link % file
             args, varargs, varkw, locals = inspect.getargvalues(frame)
 
             if func == '?':
                 call = ''
             else:
                 # Decide whether to include variable details or not
                 var_repr = self.include_vars and eqrepr or nullrepr
                 try:
                     call = tpl_call % (func,inspect.formatargvalues(args,
                                                 varargs, varkw,
                                                 locals,formatvalue=var_repr))
                 except KeyError:
                     # This happens in situations like errors inside generator
                     # expressions, where local variables are listed in the
                     # line, but can't be extracted from the frame.  I'm not
                     # 100% sure this isn't actually a bug in inspect itself,
                     # but since there's no info for us to compute with, the
                     # best we can do is report the failure and move on.  Here
                     # we must *not* call any traceback construction again,
                     # because that would mess up use of %debug later on.  So we
                     # simply report the failure and move on.  The only
                     # limitation will be that this frame won't have locals
                     # listed in the call signature.  Quite subtle problem...
                     # I can't think of a good way to validate this in a unit
                     # test, but running a script consisting of:
                     #  dict( (k,v.strip()) for (k,v) in range(10) )
                     # will illustrate the error, if this exception catch is
                     # disabled.
                     call = tpl_call_fail % func
             
             # Don't attempt to tokenize binary files.
             if file.endswith(('.so', '.pyd', '.dll')):
                 frames.append('%s %s\n' % (link,call))
                 continue
             elif file.endswith(('.pyc','.pyo')):
                 # Look up the corresponding source file.
                 file = openpy.source_from_cache(file)
 
             def linereader(file=file, lnum=[lnum], getline=ulinecache.getline):
                 line = getline(file, lnum[0])
                 lnum[0] += 1
                 return line
 
             # Build the list of names on this line of code where the exception
             # occurred.
             try:
                 names = []
                 name_cont = False
                 
                 for token_type, token, start, end, line in generate_tokens(linereader):
                     # build composite names
                     if token_type == tokenize.NAME and token not in keyword.kwlist:
                         if name_cont:
                             # Continuation of a dotted name
                             try:
                                 names[-1].append(token)
                             except IndexError:
                                 names.append([token])
                             name_cont = False
                         else:
                             # Regular new names.  We append everything, the caller
                             # will be responsible for pruning the list later.  It's
                             # very tricky to try to prune as we go, b/c composite
                             # names can fool us.  The pruning at the end is easy
                             # to do (or the caller can print a list with repeated
                             # names if so desired.
                             names.append([token])
                     elif token == '.':
                         name_cont = True
                     elif token_type == tokenize.NEWLINE:
                         break
                         
             except (IndexError, UnicodeDecodeError):
                 # signals exit of tokenizer
                 pass
             except tokenize.TokenError as msg:
                 _m = ("An unexpected error occurred while tokenizing input\n"
                       "The following traceback may be corrupted or invalid\n"
                       "The error message is: %s\n" % msg)
                 error(_m)
 
             # Join composite names (e.g. "dict.fromkeys")
             names = ['.'.join(n) for n in names]
             # prune names list of duplicates, but keep the right order
             unique_names = uniq_stable(names)
 
             # Start loop over vars
             lvals = []
             if self.include_vars:
                 for name_full in unique_names:
                     name_base = name_full.split('.',1)[0]
                     if name_base in frame.f_code.co_varnames:
                         if name_base in locals:
                             try:
                                 value = repr(eval(name_full,locals))
                             except:
                                 value = undefined
                         else:
                             value = undefined
                         name = tpl_local_var % name_full
                     else:
                         if name_base in frame.f_globals:
                             try:
                                 value = repr(eval(name_full,frame.f_globals))
                             except:
                                 value = undefined
                         else:
                             value = undefined
                         name = tpl_global_var % name_full
                     lvals.append(tpl_name_val % (name,value))
             if lvals:
                 lvals = '%s%s' % (indent,em_normal.join(lvals))
             else:
                 lvals = ''
 
             level = '%s %s\n' % (link,call)
 
             if index is None:
                 frames.append(level)
             else:
                 frames.append('%s%s' % (level,''.join(
                     _format_traceback_lines(lnum,index,lines,Colors,lvals,
                                             col_scheme))))
 
         # Get (safely) a string form of the exception info
         try:
             etype_str,evalue_str = map(str,(etype,evalue))
         except:
             # User exception is improperly defined.
             etype,evalue = str,sys.exc_info()[:2]
             etype_str,evalue_str = map(str,(etype,evalue))
         # ... and format it
         exception = ['%s%s%s: %s' % (Colors.excName, etype_str,
                                      ColorsNormal, py3compat.cast_unicode(evalue_str))]
         if (not py3compat.PY3) and type(evalue) is types.InstanceType:
             try:
                 names = [w for w in dir(evalue) if isinstance(w, py3compat.string_types)]
             except:
                 # Every now and then, an object with funny inernals blows up
                 # when dir() is called on it.  We do the best we can to report
                 # the problem and continue
                 _m = '%sException reporting error (object with broken dir())%s:'
                 exception.append(_m % (Colors.excName,ColorsNormal))
                 etype_str,evalue_str = map(str,sys.exc_info()[:2])
                 exception.append('%s%s%s: %s' % (Colors.excName,etype_str,
                                      ColorsNormal, py3compat.cast_unicode(evalue_str)))
                 names = []
             for name in names:
                 value = text_repr(getattr(evalue, name))
                 exception.append('\n%s%s = %s' % (indent, name, value))
 
         # vds: >>
         if records:
              filepath, lnum = records[-1][1:3]
              #print "file:", str(file), "linenb", str(lnum) # dbg
              filepath = os.path.abspath(filepath)
              ipinst = get_ipython()
              if ipinst is not None:
                  ipinst.hooks.synchronize_with_editor(filepath, lnum, 0)
         # vds: <<
 
         # return all our info assembled as a single string
         # return '%s\n\n%s\n%s' % (head,'\n'.join(frames),''.join(exception[0]) )
         return [head] + frames + [''.join(exception[0])]
 
     def debugger(self,force=False):
         """Call up the pdb debugger if desired, always clean up the tb
         reference.
 
         Keywords:
 
           - force(False): by default, this routine checks the instance call_pdb
             flag and does not actually invoke the debugger if the flag is false.
             The 'force' option forces the debugger to activate even if the flag
             is false.
 
         If the call_pdb flag is set, the pdb interactive debugger is
         invoked. In all cases, the self.tb reference to the current traceback
         is deleted to prevent lingering references which hamper memory
         management.
 
         Note that each call to pdb() does an 'import readline', so if your app
         requires a special setup for the readline completers, you'll have to
         fix that by hand after invoking the exception handler."""
 
         if force or self.call_pdb:
             if self.pdb is None:
                 self.pdb = debugger.Pdb(
                     self.color_scheme_table.active_scheme_name)
             # the system displayhook may have changed, restore the original
             # for pdb
             display_trap = DisplayTrap(hook=sys.__displayhook__)
             with display_trap:
                 self.pdb.reset()
                 # Find the right frame so we don't pop up inside ipython itself
                 if hasattr(self,'tb') and self.tb is not None:
                     etb = self.tb
                 else:
                     etb = self.tb = sys.last_traceback
                 while self.tb is not None and self.tb.tb_next is not None:
                     self.tb = self.tb.tb_next
                 if etb and etb.tb_next:
                     etb = etb.tb_next
                 self.pdb.botframe = etb.tb_frame
                 self.pdb.interaction(self.tb.tb_frame, self.tb)
 
         if hasattr(self,'tb'):
             del self.tb
 
     def handler(self, info=None):
         (etype, evalue, etb) = info or sys.exc_info()
         self.tb = etb
         ostream = self.ostream
         ostream.flush()
         ostream.write(self.text(etype, evalue, etb))
         ostream.write('\n')
         ostream.flush()
 
     # Changed so an instance can just be called as VerboseTB_inst() and print
     # out the right info on its own.
     def __call__(self, etype=None, evalue=None, etb=None):
         """This hook can replace sys.excepthook (for Python 2.1 or higher)."""
         if etb is None:
             self.handler()
         else:
             self.handler((etype, evalue, etb))
         try:
             self.debugger()
         except KeyboardInterrupt:
             print("\nKeyboardInterrupt")
 
 #----------------------------------------------------------------------------
 class FormattedTB(VerboseTB, ListTB):
     """Subclass ListTB but allow calling with a traceback.
 
     It can thus be used as a sys.excepthook for Python > 2.1.
 
     Also adds 'Context' and 'Verbose' modes, not available in ListTB.
 
     Allows a tb_offset to be specified. This is useful for situations where
     one needs to remove a number of topmost frames from the traceback (such as
     occurs with python programs that themselves execute other python code,
     like Python shells).  """
 
     def __init__(self, mode='Plain', color_scheme='Linux', call_pdb=False,
                  ostream=None,
                  tb_offset=0, long_header=False, include_vars=False,
                  check_cache=None):
 
         # NEVER change the order of this list. Put new modes at the end:
         self.valid_modes = ['Plain','Context','Verbose']
         self.verbose_modes = self.valid_modes[1:3]
 
         VerboseTB.__init__(self, color_scheme=color_scheme, call_pdb=call_pdb,
                            ostream=ostream, tb_offset=tb_offset,
                            long_header=long_header, include_vars=include_vars,
                            check_cache=check_cache)
 
         # Different types of tracebacks are joined with different separators to
         # form a single string.  They are taken from this dict
         self._join_chars = dict(Plain='', Context='\n', Verbose='\n')
         # set_mode also sets the tb_join_char attribute
         self.set_mode(mode)
 
     def _extract_tb(self,tb):
         if tb:
             return traceback.extract_tb(tb)
         else:
             return None
 
     def structured_traceback(self, etype, value, tb, tb_offset=None, context=5):
         tb_offset = self.tb_offset if tb_offset is None else tb_offset
         mode = self.mode
         if mode in self.verbose_modes:
             # Verbose modes need a full traceback
             return VerboseTB.structured_traceback(
                 self, etype, value, tb, tb_offset, context
             )
         else:
             # We must check the source cache because otherwise we can print
             # out-of-date source code.
             self.check_cache()
             # Now we can extract and format the exception
             elist = self._extract_tb(tb)
             return ListTB.structured_traceback(
                 self, etype, value, elist, tb_offset, context
             )
 
     def stb2text(self, stb):
         """Convert a structured traceback (a list) to a string."""
         return self.tb_join_char.join(stb)
 
 
     def set_mode(self,mode=None):
         """Switch to the desired mode.
 
         If mode is not specified, cycles through the available modes."""
 
         if not mode:
             new_idx = ( self.valid_modes.index(self.mode) + 1 ) % \
                       len(self.valid_modes)
             self.mode = self.valid_modes[new_idx]
         elif mode not in self.valid_modes:
             raise ValueError('Unrecognized mode in FormattedTB: <'+mode+'>\n'
                              'Valid modes: '+str(self.valid_modes))
         else:
             self.mode = mode
         # include variable details only in 'Verbose' mode
         self.include_vars = (self.mode == self.valid_modes[2])
         # Set the join character for generating text tracebacks
         self.tb_join_char = self._join_chars[self.mode]
 
     # some convenient shorcuts
     def plain(self):
         self.set_mode(self.valid_modes[0])
 
     def context(self):
         self.set_mode(self.valid_modes[1])
 
     def verbose(self):
         self.set_mode(self.valid_modes[2])
 
 #----------------------------------------------------------------------------
 class AutoFormattedTB(FormattedTB):
     """A traceback printer which can be called on the fly.
 
     It will find out about exceptions by itself.
 
     A brief example::
 
         AutoTB = AutoFormattedTB(mode = 'Verbose',color_scheme='Linux')
         try:
           ...
         except:
           AutoTB()  # or AutoTB(out=logfile) where logfile is an open file object
     """
 
     def __call__(self,etype=None,evalue=None,etb=None,
                  out=None,tb_offset=None):
         """Print out a formatted exception traceback.
 
         Optional arguments:
           - out: an open file-like object to direct output to.
 
           - tb_offset: the number of frames to skip over in the stack, on a
           per-call basis (this overrides temporarily the instance's tb_offset
           given at initialization time.  """
 
 
         if out is None:
             out = self.ostream
         out.flush()
         out.write(self.text(etype, evalue, etb, tb_offset))
         out.write('\n')
         out.flush()
         # FIXME: we should remove the auto pdb behavior from here and leave
         # that to the clients.
         try:
             self.debugger()
         except KeyboardInterrupt:
             print("\nKeyboardInterrupt")
 
     def structured_traceback(self, etype=None, value=None, tb=None,
                              tb_offset=None, context=5):
         if etype is None:
             etype,value,tb = sys.exc_info()
         self.tb = tb
         return FormattedTB.structured_traceback(
             self, etype, value, tb, tb_offset, context)
 
 #---------------------------------------------------------------------------
 
 # A simple class to preserve Nathan's original functionality.
 class ColorTB(FormattedTB):
     """Shorthand to initialize a FormattedTB in Linux colors mode."""
     def __init__(self,color_scheme='Linux',call_pdb=0):
         FormattedTB.__init__(self,color_scheme=color_scheme,
                              call_pdb=call_pdb)
 
 
 class SyntaxTB(ListTB):
     """Extension which holds some state: the last exception value"""
 
     def __init__(self,color_scheme = 'NoColor'):
         ListTB.__init__(self,color_scheme)
         self.last_syntax_error = None
 
     def __call__(self, etype, value, elist):
         self.last_syntax_error = value
         ListTB.__call__(self,etype,value,elist)
 
     def structured_traceback(self, etype, value, elist, tb_offset=None,
                              context=5):
         # If the source file has been edited, the line in the syntax error can
         # be wrong (retrieved from an outdated cache). This replaces it with
         # the current value.
         if isinstance(value, SyntaxError) \
                 and isinstance(value.filename, py3compat.string_types) \
                 and isinstance(value.lineno, int):
             linecache.checkcache(value.filename)
             newtext = ulinecache.getline(value.filename, value.lineno)
             if newtext:
                 value.text = newtext
         return super(SyntaxTB, self).structured_traceback(etype, value, elist,
                              tb_offset=tb_offset, context=context)
 
     def clear_err_state(self):
         """Return the current error state and clear it"""
         e = self.last_syntax_error
         self.last_syntax_error = None
         return e
 
     def stb2text(self, stb):
         """Convert a structured traceback (a list) to a string."""
         return ''.join(stb)
 
 
 #----------------------------------------------------------------------------
 # module testing (minimal)
 if __name__ == "__main__":
     def spam(c, d_e):
         (d, e) = d_e
         x = c + d
         y = c * d
         foo(x, y)
 
     def foo(a, b, bar=1):
         eggs(a, b + bar)
 
     def eggs(f, g, z=globals()):
         h = f + g
         i = f - g
         return h / i
 
     print('')
     print('*** Before ***')
     try:
         print(spam(1, (2, 3)))
     except:
         traceback.print_exc()
     print('')
 
     handler = ColorTB()
     print('*** ColorTB ***')
     try:
         print(spam(1, (2, 3)))
     except:
         handler(*sys.exc_info())
     print('')
 
     handler = VerboseTB()
     print('*** VerboseTB ***')
     try:
         print(spam(1, (2, 3)))
     except:
         handler(*sys.exc_info())
     print('')
 

IPython/extensions/cythonmagic.py

@@ -1,341 +1,345 b''
 # -*- coding: utf-8 -*-
 """
 =====================
 Cython related magics
 =====================
 
 Magic command interface for interactive work with Cython
 
 .. note::
 
   The ``Cython`` package needs to be installed separately. It
   can be obtained using ``easy_install`` or ``pip``.
 
 Usage
 =====
 
 To enable the magics below, execute ``%load_ext cythonmagic``.
 
 ``%%cython``
 
 {CYTHON_DOC}
 
 ``%%cython_inline``
 
 {CYTHON_INLINE_DOC}
 
 ``%%cython_pyximport``
 
 {CYTHON_PYXIMPORT_DOC}
 
 Author:
 * Brian Granger
 
 Parts of this code were taken from Cython.inline.
 """
 #-----------------------------------------------------------------------------
 # Copyright (C) 2010-2011, IPython Development Team.
 #
 # Distributed under the terms of the Modified BSD License.
 #
 # The full license is in the file COPYING.txt, distributed with this software.
 #-----------------------------------------------------------------------------
 
 from __future__ import print_function
 
 import imp
 import io
 import os
 import re
 import sys
 import time
 
 try:
     reload
 except NameError:   # Python 3
     from imp import reload
 
 try:
     import hashlib
 except ImportError:
     import md5 as hashlib
 
 from distutils.core import Distribution, Extension
 from distutils.command.build_ext import build_ext
 
 from IPython.core import display
 from IPython.core import magic_arguments
 from IPython.core.magic import Magics, magics_class, cell_magic
 from IPython.utils import py3compat
 from IPython.utils.path import get_ipython_cache_dir
+from IPython.utils.text import dedent
 
 import Cython
 from Cython.Compiler.Errors import CompileError
 from Cython.Build.Dependencies import cythonize
 
 
 @magics_class
 class CythonMagics(Magics):
 
     def __init__(self, shell):
         super(CythonMagics,self).__init__(shell)
         self._reloads = {}
         self._code_cache = {}
 
     def _import_all(self, module):
         for k,v in module.__dict__.items():
             if not k.startswith('__'):
                 self.shell.push({k:v})
 
     @cell_magic
     def cython_inline(self, line, cell):
         """Compile and run a Cython code cell using Cython.inline.
 
         This magic simply passes the body of the cell to Cython.inline
         and returns the result. If the variables `a` and `b` are defined
         in the user's namespace, here is a simple example that returns
         their sum::
 
             %%cython_inline
             return a+b
 
         For most purposes, we recommend the usage of the `%%cython` magic.
         """
         locs = self.shell.user_global_ns
         globs = self.shell.user_ns
         return Cython.inline(cell, locals=locs, globals=globs)
 
     @cell_magic
     def cython_pyximport(self, line, cell):
         """Compile and import a Cython code cell using pyximport.
 
         The contents of the cell are written to a `.pyx` file in the current
         working directory, which is then imported using `pyximport`. This
         magic requires a module name to be passed::
 
             %%cython_pyximport modulename
             def f(x):
                 return 2.0*x
 
         The compiled module is then imported and all of its symbols are
         injected into the user's namespace. For most purposes, we recommend
         the usage of the `%%cython` magic.
         """
         module_name = line.strip()
         if not module_name:
             raise ValueError('module name must be given')
         fname = module_name + '.pyx'
         with io.open(fname, 'w', encoding='utf-8') as f:
             f.write(cell)
         if 'pyximport' not in sys.modules:
             import pyximport
             pyximport.install(reload_support=True)
         if module_name in self._reloads:
             module = self._reloads[module_name]
             reload(module)
         else:
             __import__(module_name)
             module = sys.modules[module_name]
             self._reloads[module_name] = module
         self._import_all(module)
 
     @magic_arguments.magic_arguments()
     @magic_arguments.argument(
         '-c', '--compile-args', action='append', default=[],
         help="Extra flags to pass to compiler via the `extra_compile_args` "
              "Extension flag (can be specified  multiple times)."
     )
     @magic_arguments.argument(
         '--link-args', action='append', default=[],
         help="Extra flags to pass to linker via the `extra_link_args` "
              "Extension flag (can be specified  multiple times)."
     )
     @magic_arguments.argument(
         '-l', '--lib', action='append', default=[],
         help="Add a library to link the extension against (can be specified "
              "multiple times)."
     )
     @magic_arguments.argument(
         '-n', '--name',
         help="Specify a name for the Cython module."
     )
     @magic_arguments.argument(
         '-L', dest='library_dirs', metavar='dir', action='append', default=[],
         help="Add a path to the list of libary directories (can be specified "
              "multiple times)."
     )
     @magic_arguments.argument(
         '-I', '--include', action='append', default=[],
         help="Add a path to the list of include directories (can be specified "
              "multiple times)."
     )
     @magic_arguments.argument(
         '-+', '--cplus', action='store_true', default=False,
         help="Output a C++ rather than C file."
     )
     @magic_arguments.argument(
         '-f', '--force', action='store_true', default=False,
         help="Force the compilation of a new module, even if the source has been "
              "previously compiled."
     )
     @magic_arguments.argument(
         '-a', '--annotate', action='store_true', default=False,
         help="Produce a colorized HTML version of the source."
     )
     @cell_magic
     def cython(self, line, cell):
         """Compile and import everything from a Cython code cell.
 
         The contents of the cell are written to a `.pyx` file in the
         directory `IPYTHONDIR/cython` using a filename with the hash of the
         code. This file is then cythonized and compiled. The resulting module
         is imported and all of its symbols are injected into the user's
         namespace. The usage is similar to that of `%%cython_pyximport` but
         you don't have to pass a module name::
 
             %%cython
             def f(x):
                 return 2.0*x
 
         To compile OpenMP codes, pass the required  `--compile-args`
         and `--link-args`.  For example with gcc::
 
             %%cython --compile-args=-fopenmp --link-args=-fopenmp
             ...
         """
         args = magic_arguments.parse_argstring(self.cython, line)
         code = cell if cell.endswith('\n') else cell+'\n'
         lib_dir = os.path.join(get_ipython_cache_dir(), 'cython')
         quiet = True
         key = code, sys.version_info, sys.executable, Cython.__version__
 
         if not os.path.exists(lib_dir):
             os.makedirs(lib_dir)
 
         if args.force:
             # Force a new module name by adding the current time to the
             # key which is hashed to determine the module name.
             key += time.time(),
 
         if args.name:
             module_name = py3compat.unicode_to_str(args.name)
         else:
             module_name = "_cython_magic_" + hashlib.md5(str(key).encode('utf-8')).hexdigest()
         module_path = os.path.join(lib_dir, module_name + self.so_ext)
 
         have_module = os.path.isfile(module_path)
         need_cythonize = not have_module
 
         if args.annotate:
             html_file = os.path.join(lib_dir, module_name + '.html')
             if not os.path.isfile(html_file):
                 need_cythonize = True
 
         if need_cythonize:
             c_include_dirs = args.include
             if 'numpy' in code:
                 import numpy
                 c_include_dirs.append(numpy.get_include())
             pyx_file = os.path.join(lib_dir, module_name + '.pyx')
             pyx_file = py3compat.cast_bytes_py2(pyx_file, encoding=sys.getfilesystemencoding())
             with io.open(pyx_file, 'w', encoding='utf-8') as f:
                 f.write(code)
             extension = Extension(
                 name = module_name,
                 sources = [pyx_file],
                 include_dirs = c_include_dirs,
                 library_dirs = args.library_dirs,
                 extra_compile_args = args.compile_args,
                 extra_link_args = args.link_args,
                 libraries = args.lib,
                 language = 'c++' if args.cplus else 'c',
             )
             build_extension = self._get_build_extension()
             try:
                 opts = dict(
                     quiet=quiet,
                     annotate = args.annotate,
                     force = True,
                     )
                 build_extension.extensions = cythonize([extension], **opts)
             except CompileError:
                 return
 
         if not have_module:
             build_extension.build_temp = os.path.dirname(pyx_file)
             build_extension.build_lib  = lib_dir
             build_extension.run()
             self._code_cache[key] = module_name
 
         module = imp.load_dynamic(module_name, module_path)
         self._import_all(module)
 
         if args.annotate:
             try:
                 with io.open(html_file, encoding='utf-8') as f:
                     annotated_html = f.read()
             except IOError as e:
                 # File could not be opened. Most likely the user has a version
                 # of Cython before 0.15.1 (when `cythonize` learned the
                 # `force` keyword argument) and has already compiled this
                 # exact source without annotation.
                 print('Cython completed successfully but the annotated '
                       'source could not be read.', file=sys.stderr)
                 print(e, file=sys.stderr)
             else:
                 return display.HTML(self.clean_annotated_html(annotated_html))
 
     @property
     def so_ext(self):
         """The extension suffix for compiled modules."""
         try:
             return self._so_ext
         except AttributeError:
             self._so_ext = self._get_build_extension().get_ext_filename('')
             return self._so_ext
 
     def _clear_distutils_mkpath_cache(self):
         """clear distutils mkpath cache
         
         prevents distutils from skipping re-creation of dirs that have been removed
         """
         try:
             from distutils.dir_util import _path_created
         except ImportError:
             pass
         else:
             _path_created.clear()
     
     def _get_build_extension(self):
         self._clear_distutils_mkpath_cache()
         dist = Distribution()
         config_files = dist.find_config_files()
         try:
             config_files.remove('setup.cfg')
         except ValueError:
             pass
         dist.parse_config_files(config_files)
         build_extension = build_ext(dist)
         build_extension.finalize_options()
         return build_extension
 
     @staticmethod
     def clean_annotated_html(html):
         """Clean up the annotated HTML source.
 
         Strips the link to the generated C or C++ file, which we do not
         present to the user.
         """
         r = re.compile('<p>Raw output: <a href="(.*)">(.*)</a>')
         html = '\n'.join(l for l in html.splitlines() if not r.match(l))
         return html
 
 __doc__ = __doc__.format(
-                CYTHON_DOC = ' '*8 + CythonMagics.cython.__doc__,
-                CYTHON_INLINE_DOC = ' '*8 + CythonMagics.cython_inline.__doc__,
-                CYTHON_PYXIMPORT_DOC = ' '*8 + CythonMagics.cython_pyximport.__doc__,
+                # rST doesn't see the -+ flag as part of an option list, so we
+                # hide it from the module-level docstring.
+                CYTHON_DOC = dedent(CythonMagics.cython.__doc__\
+                            .replace('-+, --cplus','--cplus    ')),
+                CYTHON_INLINE_DOC = dedent(CythonMagics.cython_inline.__doc__),
+                CYTHON_PYXIMPORT_DOC = dedent(CythonMagics.cython_pyximport.__doc__),
 )
 
 def load_ipython_extension(ip):
     """Load the extension in IPython."""
     ip.register_magics(CythonMagics)

IPython/extensions/octavemagic.py

@@ -1,371 +1,374 b''
 # -*- coding: utf-8 -*-
 """
 ===========
 octavemagic
 ===========
 
 Magics for interacting with Octave via oct2py.
 
 .. note::
 
   The ``oct2py`` module needs to be installed separately and
   can be obtained using ``easy_install`` or ``pip``.
 
   You will also need a working copy of GNU Octave.
 
 Usage
 =====
 
 To enable the magics below, execute ``%load_ext octavemagic``.
 
 ``%octave``
 
 {OCTAVE_DOC}
 
 ``%octave_push``
 
 {OCTAVE_PUSH_DOC}
 
 ``%octave_pull``
 
 {OCTAVE_PULL_DOC}
 
 """
 
 #-----------------------------------------------------------------------------
 #  Copyright (C) 2012 The IPython Development Team
 #
 #  Distributed under the terms of the BSD License.  The full license is in
 #  the file COPYING, distributed as part of this software.
 #-----------------------------------------------------------------------------
 
 import tempfile
 from glob import glob
 from shutil import rmtree
 
 import numpy as np
 import oct2py
 from xml.dom import minidom
 
 from IPython.core.displaypub import publish_display_data
 from IPython.core.magic import (Magics, magics_class, line_magic,
                                 line_cell_magic, needs_local_scope)
 from IPython.testing.skipdoctest import skip_doctest
 from IPython.core.magic_arguments import (
     argument, magic_arguments, parse_argstring
 )
 from IPython.utils.py3compat import unicode_to_str
+from IPython.utils.text import dedent
 
 class OctaveMagicError(oct2py.Oct2PyError):
     pass
 
 _mimetypes = {'png' : 'image/png',
              'svg' : 'image/svg+xml',
              'jpg' : 'image/jpeg',
               'jpeg': 'image/jpeg'}
 
 @magics_class
 class OctaveMagics(Magics):
     """A set of magics useful for interactive work with Octave via oct2py.
     """
     def __init__(self, shell):
         """
         Parameters
         ----------
         shell : IPython shell
 
         """
         super(OctaveMagics, self).__init__(shell)
         self._oct = oct2py.Oct2Py()
         self._plot_format = 'png'
 
         # Allow publish_display_data to be overridden for
         # testing purposes.
         self._publish_display_data = publish_display_data
 
 
     def _fix_gnuplot_svg_size(self, image, size=None):
         """
         GnuPlot SVGs do not have height/width attributes.  Set
         these to be the same as the viewBox, so that the browser
         scales the image correctly.
 
         Parameters
         ----------
         image : str
             SVG data.
         size : tuple of int
             Image width, height.
 
         """
         (svg,) = minidom.parseString(image).getElementsByTagName('svg')
         viewbox = svg.getAttribute('viewBox').split(' ')
 
         if size is not None:
             width, height = size
         else:
             width, height = viewbox[2:]
 
         svg.setAttribute('width', '%dpx' % width)
         svg.setAttribute('height', '%dpx' % height)
         return svg.toxml()
 
 
     @skip_doctest
     @line_magic
     def octave_push(self, line):
         '''
         Line-level magic that pushes a variable to Octave.
 
         `line` should be made up of whitespace separated variable names in the
         IPython namespace::
 
             In [7]: import numpy as np
 
             In [8]: X = np.arange(5)
 
             In [9]: X.mean()
             Out[9]: 2.0
 
             In [10]: %octave_push X
 
             In [11]: %octave mean(X)
             Out[11]: 2.0
 
         '''
         inputs = line.split(' ')
         for input in inputs:
             input = unicode_to_str(input)
             self._oct.put(input, self.shell.user_ns[input])
 
 
     @skip_doctest
     @line_magic
     def octave_pull(self, line):
         '''
         Line-level magic that pulls a variable from Octave.
 
+        ::
+
             In [18]: _ = %octave x = [1 2; 3 4]; y = 'hello'
 
             In [19]: %octave_pull x y
 
             In [20]: x
             Out[20]:
             array([[ 1.,  2.],
                    [ 3.,  4.]])
 
             In [21]: y
             Out[21]: 'hello'
 
         '''
         outputs = line.split(' ')
         for output in outputs:
             output = unicode_to_str(output)
             self.shell.push({output: self._oct.get(output)})
 
 
     @skip_doctest
     @magic_arguments()
     @argument(
         '-i', '--input', action='append',
         help='Names of input variables to be pushed to Octave. Multiple names '
              'can be passed, separated by commas with no whitespace.'
         )
     @argument(
         '-o', '--output', action='append',
         help='Names of variables to be pulled from Octave after executing cell '
              'body. Multiple names can be passed, separated by commas with no '
              'whitespace.'
         )
     @argument(
         '-s', '--size', action='store',
         help='Pixel size of plots, "width,height". Default is "-s 400,250".'
         )
     @argument(
         '-f', '--format', action='store',
         help='Plot format (png, svg or jpg).'
         )
 
     @needs_local_scope
     @argument(
         'code',
         nargs='*',
         )
     @line_cell_magic
     def octave(self, line, cell=None, local_ns=None):
         '''
         Execute code in Octave, and pull some of the results back into the
-        Python namespace.
+        Python namespace::
 
             In [9]: %octave X = [1 2; 3 4]; mean(X)
             Out[9]: array([[ 2., 3.]])
 
         As a cell, this will run a block of Octave code, without returning any
         value::
 
             In [10]: %%octave
                ....: p = [-2, -1, 0, 1, 2]
                ....: polyout(p, 'x')
 
             -2*x^4 - 1*x^3 + 0*x^2 + 1*x^1 + 2
 
-        In the notebook, plots are published as the output of the cell, e.g.
+        In the notebook, plots are published as the output of the cell, e.g.::
 
-        %octave plot([1 2 3], [4 5 6])
+            %octave plot([1 2 3], [4 5 6])
 
         will create a line plot.
 
         Objects can be passed back and forth between Octave and IPython via the
         -i and -o flags in line::
 
             In [14]: Z = np.array([1, 4, 5, 10])
 
             In [15]: %octave -i Z mean(Z)
             Out[15]: array([ 5.])
 
 
             In [16]: %octave -o W W = Z * mean(Z)
             Out[16]: array([  5.,  20.,  25.,  50.])
 
             In [17]: W
             Out[17]: array([  5.,  20.,  25.,  50.])
 
         The size and format of output plots can be specified::
 
             In [18]: %%octave -s 600,800 -f svg
                 ...: plot([1, 2, 3]);
 
         '''
         args = parse_argstring(self.octave, line)
 
         # arguments 'code' in line are prepended to the cell lines
         if cell is None:
             code = ''
             return_output = True
         else:
             code = cell
             return_output = False
 
         code = ' '.join(args.code) + code
 
         # if there is no local namespace then default to an empty dict
         if local_ns is None:
             local_ns = {}
 
         if args.input:
             for input in ','.join(args.input).split(','):
                 input = unicode_to_str(input)
                 try:
                     val = local_ns[input]
                 except KeyError:
                     val = self.shell.user_ns[input]
                 self._oct.put(input, val)
 
         # generate plots in a temporary directory
         plot_dir = tempfile.mkdtemp().replace('\\', '/')
         if args.size is not None:
             size = args.size
         else:
             size = '400,240'
 
         if args.format is not None:
             plot_format = args.format
         else:
             plot_format = 'png'
 
         pre_call = '''
         global __ipy_figures = [];
         page_screen_output(0);
 
         function fig_create(src, event)
           global __ipy_figures;
           __ipy_figures(size(__ipy_figures) + 1) = src;
           set(src, "visible", "off");
         end
 
         set(0, 'DefaultFigureCreateFcn', @fig_create);
 
         close all;
         clear ans;
 
         # ___<end_pre_call>___ #
         '''
 
         post_call = '''
         # ___<start_post_call>___ #
 
         # Save output of the last execution
         if exist("ans") == 1
           _ = ans;
         else
           _ = nan;
         end
 
         for f = __ipy_figures
           outfile = sprintf('%(plot_dir)s/__ipy_oct_fig_%%03d.png', f);
           try
             print(f, outfile, '-d%(plot_format)s', '-tight', '-S%(size)s');
           end
         end
 
         ''' % locals()
 
         code = ' '.join((pre_call, code, post_call))
         try:
             text_output = self._oct.run(code, verbose=False)
         except (oct2py.Oct2PyError) as exception:
             msg = exception.message
             msg = msg.split('# ___<end_pre_call>___ #')[1]
             msg = msg.split('# ___<start_post_call>___ #')[0]
             raise OctaveMagicError('Octave could not complete execution.  '
                                    'Traceback (currently broken in oct2py): %s'
                                    % msg)
 
         key = 'OctaveMagic.Octave'
         display_data = []
 
         # Publish text output
         if text_output:
             display_data.append((key, {'text/plain': text_output}))
 
         # Publish images
         images = [open(imgfile, 'rb').read() for imgfile in \
                   glob("%s/*" % plot_dir)]
         rmtree(plot_dir)
 
         plot_mime_type = _mimetypes.get(plot_format, 'image/png')
         width, height = [int(s) for s in size.split(',')]
         for image in images:
             if plot_format == 'svg':
                 image = self._fix_gnuplot_svg_size(image, size=(width, height))
             display_data.append((key, {plot_mime_type: image}))
 
         if args.output:
             for output in ','.join(args.output).split(','):
                 output = unicode_to_str(output)
                 self.shell.push({output: self._oct.get(output)})
 
         for source, data in display_data:
             self._publish_display_data(source, data)
 
         if return_output:
             ans = self._oct.get('_')
 
             # Unfortunately, Octave doesn't have a "None" object,
             # so we can't return any NaN outputs
             if np.isscalar(ans) and np.isnan(ans):
                 ans = None
 
             return ans
 
 
 __doc__ = __doc__.format(
-    OCTAVE_DOC = ' '*8 + OctaveMagics.octave.__doc__,
-    OCTAVE_PUSH_DOC = ' '*8 + OctaveMagics.octave_push.__doc__,
-    OCTAVE_PULL_DOC = ' '*8 + OctaveMagics.octave_pull.__doc__
+    OCTAVE_DOC = dedent(OctaveMagics.octave.__doc__),
+    OCTAVE_PUSH_DOC = dedent(OctaveMagics.octave_push.__doc__),
+    OCTAVE_PULL_DOC = dedent(OctaveMagics.octave_pull.__doc__)
     )
 
 
 def load_ipython_extension(ip):
     """Load the extension in IPython."""
     ip.register_magics(OctaveMagics)

IPython/extensions/rmagic.py

@@ -1,695 +1,696 b''
 # -*- coding: utf-8 -*-
 """
 ======
 Rmagic
 ======
 
 Magic command interface for interactive work with R via rpy2
 
 .. note::
 
   The ``rpy2`` package needs to be installed separately. It
   can be obtained using ``easy_install`` or ``pip``.
 
   You will also need a working copy of R.
 
 Usage
 =====
 
 To enable the magics below, execute ``%load_ext rmagic``.
 
 ``%R``
 
 {R_DOC}
 
 ``%Rpush``
 
 {RPUSH_DOC}
 
 ``%Rpull``
 
 {RPULL_DOC}
 
 ``%Rget``
 
 {RGET_DOC}
 
 """
 from __future__ import print_function
 
 #-----------------------------------------------------------------------------
 #  Copyright (C) 2012 The IPython Development Team
 #
 #  Distributed under the terms of the BSD License.  The full license is in
 #  the file COPYING, distributed as part of this software.
 #-----------------------------------------------------------------------------
 
 import sys
 import tempfile
 from glob import glob
 from shutil import rmtree
 
 # numpy and rpy2 imports
 
 import numpy as np
 
 import rpy2.rinterface as ri
 import rpy2.robjects as ro
 try:
     from rpy2.robjects import pandas2ri
     pandas2ri.activate()
 except ImportError:
     pandas2ri = None
     from rpy2.robjects import numpy2ri
     numpy2ri.activate()
 
 # IPython imports
 
 from IPython.core.displaypub import publish_display_data
 from IPython.core.magic import (Magics, magics_class, line_magic,
                                 line_cell_magic, needs_local_scope)
 from IPython.testing.skipdoctest import skip_doctest
 from IPython.core.magic_arguments import (
     argument, magic_arguments, parse_argstring
 )
 from IPython.external.simplegeneric import generic
 from IPython.utils.py3compat import (str_to_unicode, unicode_to_str, PY3,
                                      unicode_type)
+from IPython.utils.text import dedent
 
 class RInterpreterError(ri.RRuntimeError):
     """An error when running R code in a %%R magic cell."""
     def __init__(self, line, err, stdout):
         self.line = line
         self.err = err.rstrip()
         self.stdout = stdout.rstrip()
     
     def __unicode__(self):
         s = 'Failed to parse and evaluate line %r.\nR error message: %r' % \
                 (self.line, self.err)
         if self.stdout and (self.stdout != self.err):
             s += '\nR stdout:\n' + self.stdout
         return s
     
     if PY3:
         __str__ = __unicode__
     else:
         def __str__(self):
             return unicode_to_str(unicode(self), 'utf-8')
 
 def Rconverter(Robj, dataframe=False):
     """
     Convert an object in R's namespace to one suitable
     for ipython's namespace.
 
     For a data.frame, it tries to return a structured array.
     It first checks for colnames, then names.
     If all are NULL, it returns np.asarray(Robj), else
     it tries to construct a recarray
 
     Parameters
     ----------
 
     Robj: an R object returned from rpy2
     """
     is_data_frame = ro.r('is.data.frame')
     colnames = ro.r('colnames')
     rownames = ro.r('rownames') # with pandas, these could be used for the index
     names = ro.r('names')
 
     if dataframe:
         as_data_frame = ro.r('as.data.frame')
         cols = colnames(Robj)
         _names = names(Robj)
         if cols != ri.NULL:
             Robj = as_data_frame(Robj)
             names = tuple(np.array(cols))
         elif _names != ri.NULL:
             names = tuple(np.array(_names))
         else: # failed to find names
             return np.asarray(Robj)
         Robj = np.rec.fromarrays(Robj, names = names)
     return np.asarray(Robj)
 
 @generic
 def pyconverter(pyobj):
     """Convert Python objects to R objects. Add types using the decorator:
     
     @pyconverter.when_type
     """
     return pyobj
 
 # The default conversion for lists seems to make them a nested list. That has
 # some advantages, but is rarely convenient, so for interactive use, we convert
 # lists to a numpy array, which becomes an R vector.
 @pyconverter.when_type(list)
 def pyconverter_list(pyobj):
     return np.asarray(pyobj)
 
 if pandas2ri is None:
     # pandas2ri was new in rpy2 2.3.3, so for now we'll fallback to pandas'
     # conversion function.
     try:
         from pandas import DataFrame
         from pandas.rpy.common import convert_to_r_dataframe
         @pyconverter.when_type(DataFrame)
         def pyconverter_dataframe(pyobj):
             return convert_to_r_dataframe(pyobj, strings_as_factors=True)
     except ImportError:
         pass
 
 @magics_class
 class RMagics(Magics):
     """A set of magics useful for interactive work with R via rpy2.
     """
 
     def __init__(self, shell, Rconverter=Rconverter,
                  pyconverter=pyconverter,
                  cache_display_data=False):
         """
         Parameters
         ----------
 
         shell : IPython shell
         
         Rconverter : callable
             To be called on values taken from R before putting them in the
             IPython namespace.
 
         pyconverter : callable
             To be called on values in ipython namespace before 
             assigning to variables in rpy2.
 
         cache_display_data : bool
             If True, the published results of the final call to R are 
             cached in the variable 'display_cache'.
 
         """
         super(RMagics, self).__init__(shell)
         self.cache_display_data = cache_display_data
 
         self.r = ro.R()
 
         self.Rstdout_cache = []
         self.pyconverter = pyconverter
         self.Rconverter = Rconverter
 
     def eval(self, line):
         '''
         Parse and evaluate a line of R code with rpy2.
         Returns the output to R's stdout() connection, 
         the value generated by evaluating the code, and a
         boolean indicating whether the return value would be
         visible if the line of code were evaluated in an R REPL.
         
         R Code evaluation and visibility determination are
         done via an R call of the form withVisible({<code>})
         
         '''
         old_writeconsole = ri.get_writeconsole()
         ri.set_writeconsole(self.write_console)
         try:
             res = ro.r("withVisible({%s})" % line)
             value = res[0] #value (R object)
             visible = ro.conversion.ri2py(res[1])[0] #visible (boolean)
         except (ri.RRuntimeError, ValueError) as exception:
             warning_or_other_msg = self.flush() # otherwise next return seems to have copy of error
             raise RInterpreterError(line, str_to_unicode(str(exception)), warning_or_other_msg)
         text_output = self.flush()
         ri.set_writeconsole(old_writeconsole)
         return text_output, value, visible
 
     def write_console(self, output):
         '''
         A hook to capture R's stdout in a cache.
         '''
         self.Rstdout_cache.append(output)
 
     def flush(self):
         '''
         Flush R's stdout cache to a string, returning the string.
         '''
         value = ''.join([str_to_unicode(s, 'utf-8') for s in self.Rstdout_cache])
         self.Rstdout_cache = []
         return value
 
     @skip_doctest
     @needs_local_scope
     @line_magic
     def Rpush(self, line, local_ns=None):
         '''
         A line-level magic for R that pushes
         variables from python to rpy2. The line should be made up
         of whitespace separated variable names in the IPython
         namespace::
 
             In [7]: import numpy as np
 
             In [8]: X = np.array([4.5,6.3,7.9])
 
             In [9]: X.mean()
             Out[9]: 6.2333333333333343
 
             In [10]: %Rpush X
 
             In [11]: %R mean(X)
             Out[11]: array([ 6.23333333])
 
         '''
         if local_ns is None:
             local_ns = {}
 
         inputs = line.split(' ')
         for input in inputs:
             try:
                 val = local_ns[input]
             except KeyError:
                 try:
                     val = self.shell.user_ns[input]
                 except KeyError:
                     # reraise the KeyError as a NameError so that it looks like
                     # the standard python behavior when you use an unnamed
                     # variable
                     raise NameError("name '%s' is not defined" % input)
 
             self.r.assign(input, self.pyconverter(val))
 
     @skip_doctest
     @magic_arguments()
     @argument(
         '-d', '--as_dataframe', action='store_true',
         default=False,
         help='Convert objects to data.frames before returning to ipython.'
         )
     @argument(
         'outputs',
         nargs='*',
         )
     @line_magic
     def Rpull(self, line):
         '''
         A line-level magic for R that pulls
         variables from python to rpy2::
 
             In [18]: _ = %R x = c(3,4,6.7); y = c(4,6,7); z = c('a',3,4)
 
             In [19]: %Rpull x  y z
 
             In [20]: x
             Out[20]: array([ 3. ,  4. ,  6.7])
 
             In [21]: y
             Out[21]: array([ 4.,  6.,  7.])
 
             In [22]: z
             Out[22]:
             array(['a', '3', '4'],
                   dtype='|S1')
 
 
         If --as_dataframe, then each object is returned as a structured array
         after first passed through "as.data.frame" in R before
         being calling self.Rconverter. 
         This is useful when a structured array is desired as output, or
         when the object in R has mixed data types. 
         See the %%R docstring for more examples.
 
         Notes
         -----
 
         Beware that R names can have '.' so this is not fool proof.
         To avoid this, don't name your R objects with '.'s...
 
         '''
         args = parse_argstring(self.Rpull, line)
         outputs = args.outputs
         for output in outputs:
             self.shell.push({output:self.Rconverter(self.r(output),dataframe=args.as_dataframe)})
 
     @skip_doctest
     @magic_arguments()
     @argument(
         '-d', '--as_dataframe', action='store_true',
         default=False,
         help='Convert objects to data.frames before returning to ipython.'
         )
     @argument(
         'output',
         nargs=1,
         type=str,
         )
     @line_magic
     def Rget(self, line):
         '''
         Return an object from rpy2, possibly as a structured array (if possible).
         Similar to Rpull except only one argument is accepted and the value is 
         returned rather than pushed to self.shell.user_ns::
 
             In [3]: dtype=[('x', '<i4'), ('y', '<f8'), ('z', '|S1')]
 
             In [4]: datapy = np.array([(1, 2.9, 'a'), (2, 3.5, 'b'), (3, 2.1, 'c'), (4, 5, 'e')], dtype=dtype)
 
             In [5]: %R -i datapy
 
             In [6]: %Rget datapy
             Out[6]: 
             array([['1', '2', '3', '4'],
                    ['2', '3', '2', '5'],
                    ['a', 'b', 'c', 'e']], 
                   dtype='|S1')
 
             In [7]: %Rget -d datapy
             Out[7]: 
             array([(1, 2.9, 'a'), (2, 3.5, 'b'), (3, 2.1, 'c'), (4, 5.0, 'e')], 
                   dtype=[('x', '<i4'), ('y', '<f8'), ('z', '|S1')])
 
         '''
         args = parse_argstring(self.Rget, line)
         output = args.output
         return self.Rconverter(self.r(output[0]),dataframe=args.as_dataframe)
 
 
     @skip_doctest
     @magic_arguments()
     @argument(
         '-i', '--input', action='append',
         help='Names of input variable from shell.user_ns to be assigned to R variables of the same names after calling self.pyconverter. Multiple names can be passed separated only by commas with no whitespace.'
         )
     @argument(
         '-o', '--output', action='append',
         help='Names of variables to be pushed from rpy2 to shell.user_ns after executing cell body and applying self.Rconverter. Multiple names can be passed separated only by commas with no whitespace.'
         )
     @argument(
         '-w', '--width', type=int,
         help='Width of png plotting device sent as an argument to *png* in R.'
         )
     @argument(
         '-h', '--height', type=int,
         help='Height of png plotting device sent as an argument to *png* in R.'
         )
 
     @argument(
         '-d', '--dataframe', action='append',
         help='Convert these objects to data.frames and return as structured arrays.'
         )
     @argument(
         '-u', '--units', type=unicode_type, choices=["px", "in", "cm", "mm"],
         help='Units of png plotting device sent as an argument to *png* in R. One of ["px", "in", "cm", "mm"].'
         )
     @argument(
         '-r', '--res', type=int,
         help='Resolution of png plotting device sent as an argument to *png* in R. Defaults to 72 if *units* is one of ["in", "cm", "mm"].'
         )
     @argument(
         '-p', '--pointsize', type=int,
         help='Pointsize of png plotting device sent as an argument to *png* in R.'
         )
     @argument(
         '-b', '--bg',
         help='Background of png plotting device sent as an argument to *png* in R.'
         )
     @argument(
         '-n', '--noreturn',
         help='Force the magic to not return anything.',
         action='store_true',
         default=False
         )
     @argument(
         'code',
         nargs='*',
         )
     @needs_local_scope
     @line_cell_magic
     def R(self, line, cell=None, local_ns=None):
         '''
         Execute code in R, and pull some of the results back into the Python namespace.
 
         In line mode, this will evaluate an expression and convert the returned value to a Python object.
         The return value is determined by rpy2's behaviour of returning the result of evaluating the
         final line. 
 
         Multiple R lines can be executed by joining them with semicolons::
 
             In [9]: %R X=c(1,4,5,7); sd(X); mean(X)
             Out[9]: array([ 4.25])
 
         In cell mode, this will run a block of R code. The resulting value
         is printed if it would printed be when evaluating the same code 
         within a standard R REPL.
         
         Nothing is returned to python by default in cell mode::
 
             In [10]: %%R
                ....: Y = c(2,4,3,9)
                ....: summary(lm(Y~X))
 
             Call:
             lm(formula = Y ~ X)
 
             Residuals:
                 1     2     3     4
              0.88 -0.24 -2.28  1.64
 
             Coefficients:
                         Estimate Std. Error t value Pr(>|t|)
             (Intercept)   0.0800     2.3000   0.035    0.975
             X             1.0400     0.4822   2.157    0.164
 
             Residual standard error: 2.088 on 2 degrees of freedom
             Multiple R-squared: 0.6993,Adjusted R-squared: 0.549
             F-statistic: 4.651 on 1 and 2 DF,  p-value: 0.1638
 
         In the notebook, plots are published as the output of the cell::
 
             %R plot(X, Y)
 
         will create a scatter plot of X bs Y.
 
         If cell is not None and line has some R code, it is prepended to
         the R code in cell.
 
         Objects can be passed back and forth between rpy2 and python via the -i -o flags in line::
 
             In [14]: Z = np.array([1,4,5,10])
 
             In [15]: %R -i Z mean(Z)
             Out[15]: array([ 5.])
 
 
             In [16]: %R -o W W=Z*mean(Z)
             Out[16]: array([  5.,  20.,  25.,  50.])
 
             In [17]: W
             Out[17]: array([  5.,  20.,  25.,  50.])
 
         The return value is determined by these rules:
 
         * If the cell is not None, the magic returns None.
 
         * If the cell evaluates as False, the resulting value is returned
           unless the final line prints something to the console, in
           which case None is returned.
 
         * If the final line results in a NULL value when evaluated
           by rpy2, then None is returned.
 
         * No attempt is made to convert the final value to a structured array.
           Use the --dataframe flag or %Rget to push / return a structured array.
 
         * If the -n flag is present, there is no return value.
 
         * A trailing ';' will also result in no return value as the last
           value in the line is an empty string.
 
         The --dataframe argument will attempt to return structured arrays. 
         This is useful for dataframes with
         mixed data types. Note also that for a data.frame, 
         if it is returned as an ndarray, it is transposed::
 
             In [18]: dtype=[('x', '<i4'), ('y', '<f8'), ('z', '|S1')]
 
             In [19]: datapy = np.array([(1, 2.9, 'a'), (2, 3.5, 'b'), (3, 2.1, 'c'), (4, 5, 'e')], dtype=dtype)
 
             In [20]: %%R -o datar
             datar = datapy
                ....: 
 
             In [21]: datar
             Out[21]: 
             array([['1', '2', '3', '4'],
                    ['2', '3', '2', '5'],
                    ['a', 'b', 'c', 'e']], 
                   dtype='|S1')
 
             In [22]: %%R -d datar
             datar = datapy
                ....: 
 
             In [23]: datar
             Out[23]: 
             array([(1, 2.9, 'a'), (2, 3.5, 'b'), (3, 2.1, 'c'), (4, 5.0, 'e')], 
                   dtype=[('x', '<i4'), ('y', '<f8'), ('z', '|S1')])
 
         The --dataframe argument first tries colnames, then names.
         If both are NULL, it returns an ndarray (i.e. unstructured)::
 
             In [1]: %R mydata=c(4,6,8.3); NULL
 
             In [2]: %R -d mydata
 
             In [3]: mydata
             Out[3]: array([ 4. ,  6. ,  8.3])
 
             In [4]: %R names(mydata) = c('a','b','c'); NULL
 
             In [5]: %R -d mydata
 
             In [6]: mydata
             Out[6]: 
             array((4.0, 6.0, 8.3), 
                   dtype=[('a', '<f8'), ('b', '<f8'), ('c', '<f8')])
 
             In [7]: %R -o mydata
 
             In [8]: mydata
             Out[8]: array([ 4. ,  6. ,  8.3])
 
         '''
 
         args = parse_argstring(self.R, line)
 
         # arguments 'code' in line are prepended to
         # the cell lines
 
         if cell is None:
             code = ''
             return_output = True
             line_mode = True
         else:
             code = cell
             return_output = False
             line_mode = False
 
         code = ' '.join(args.code) + code
 
         # if there is no local namespace then default to an empty dict
         if local_ns is None:
             local_ns = {}
 
         if args.input:
             for input in ','.join(args.input).split(','):
                 try:
                     val = local_ns[input]
                 except KeyError:
                     try:
                         val = self.shell.user_ns[input]
                     except KeyError:
                         raise NameError("name '%s' is not defined" % input)
                 self.r.assign(input, self.pyconverter(val))
 
         if getattr(args, 'units') is not None:
             if args.units != "px" and getattr(args, 'res') is None:
                 args.res = 72
             args.units = '"%s"' % args.units
 
         png_argdict = dict([(n, getattr(args, n)) for n in ['units', 'res', 'height', 'width', 'bg', 'pointsize']])
         png_args = ','.join(['%s=%s' % (o,v) for o, v in png_argdict.items() if v is not None])
         # execute the R code in a temporary directory
 
         tmpd = tempfile.mkdtemp()
         self.r('png("%s/Rplots%%03d.png",%s)' % (tmpd.replace('\\', '/'), png_args))
 
         text_output = ''
         try:
             if line_mode:
                 for line in code.split(';'):
                     text_result, result, visible = self.eval(line)
                     text_output += text_result
                 if text_result:
                     # the last line printed something to the console so we won't return it
                     return_output = False
             else:
                 text_result, result, visible = self.eval(code)
                 text_output += text_result
                 if visible:
                     old_writeconsole = ri.get_writeconsole()
                     ri.set_writeconsole(self.write_console) 
                     ro.r.show(result)
                     text_output += self.flush()
                     ri.set_writeconsole(old_writeconsole)
         
         except RInterpreterError as e:
             print(e.stdout)
             if not e.stdout.endswith(e.err):
                 print(e.err)
             rmtree(tmpd)
             return
 
         self.r('dev.off()')
 
         # read out all the saved .png files
 
         images = [open(imgfile, 'rb').read() for imgfile in glob("%s/Rplots*png" % tmpd)]
 
         # now publish the images
         # mimicking IPython/zmq/pylab/backend_inline.py
         fmt = 'png'
         mimetypes = { 'png' : 'image/png', 'svg' : 'image/svg+xml' }
         mime = mimetypes[fmt]
 
         # publish the printed R objects, if any
 
         display_data = []
         if text_output:
             display_data.append(('RMagic.R', {'text/plain':text_output}))
 
         # flush text streams before sending figures, helps a little with output
         for image in images:
             # synchronization in the console (though it's a bandaid, not a real sln)
             sys.stdout.flush(); sys.stderr.flush()
             display_data.append(('RMagic.R', {mime: image}))
 
         # kill the temporary directory
         rmtree(tmpd)
 
         # try to turn every output into a numpy array
         # this means that output are assumed to be castable
         # as numpy arrays
 
         if args.output:
             for output in ','.join(args.output).split(','):
                 self.shell.push({output:self.Rconverter(self.r(output), dataframe=False)})
 
         if args.dataframe:
             for output in ','.join(args.dataframe).split(','):
                 self.shell.push({output:self.Rconverter(self.r(output), dataframe=True)})
 
         for tag, disp_d in display_data:
             publish_display_data(tag, disp_d)
 
         # this will keep a reference to the display_data
         # which might be useful to other objects who happen to use
         # this method
 
         if self.cache_display_data:
             self.display_cache = display_data
 
         # if in line mode and return_output, return the result as an ndarray
         if return_output and not args.noreturn:
             if result != ri.NULL:
                 return self.Rconverter(result, dataframe=False)
 
 __doc__ = __doc__.format(
-                R_DOC = ' '*8 + RMagics.R.__doc__,
-                RPUSH_DOC = ' '*8 + RMagics.Rpush.__doc__,
-                RPULL_DOC = ' '*8 + RMagics.Rpull.__doc__,
-                RGET_DOC = ' '*8 + RMagics.Rget.__doc__
+                R_DOC = dedent(RMagics.R.__doc__),
+                RPUSH_DOC = dedent(RMagics.Rpush.__doc__),
+                RPULL_DOC = dedent(RMagics.Rpull.__doc__),
+                RGET_DOC = dedent(RMagics.Rget.__doc__)
 )
 
 
 def load_ipython_extension(ip):
     """Load the extension in IPython."""
     ip.register_magics(RMagics)
     # Initialising rpy2 interferes with readline. Since, at this point, we've
     # probably just loaded rpy2, we reset the delimiters. See issue gh-2759.
     if ip.has_readline:
         ip.readline.set_completer_delims(ip.readline_delims)

IPython/html/services/notebooks/handlers.py

@@ -1,278 +1,281 b''
 """Tornado handlers for the notebooks web service.
 
 Authors:
 
 * Brian Granger
 """
 
 #-----------------------------------------------------------------------------
 #  Copyright (C) 2011  The IPython Development Team
 #
 #  Distributed under the terms of the BSD License.  The full license is in
 #  the file COPYING, distributed as part of this software.
 #-----------------------------------------------------------------------------
 
 #-----------------------------------------------------------------------------
 # Imports
 #-----------------------------------------------------------------------------
 
 import json
 
 from tornado import web
 
 from IPython.html.utils import url_path_join, url_escape
 from IPython.utils.jsonutil import date_default
 
 from IPython.html.base.handlers import IPythonHandler, json_errors
 
 #-----------------------------------------------------------------------------
 # Notebook web service handlers
 #-----------------------------------------------------------------------------
 
 
 class NotebookHandler(IPythonHandler):
 
     SUPPORTED_METHODS = (u'GET', u'PUT', u'PATCH', u'POST', u'DELETE')
 
     def notebook_location(self, name, path=''):
         """Return the full URL location of a notebook based.
         
         Parameters
         ----------
         name : unicode
             The base name of the notebook, such as "foo.ipynb".
         path : unicode
             The URL path of the notebook.
         """
         return url_escape(url_path_join(
             self.base_project_url, 'api', 'notebooks', path, name
         ))
 
     def _finish_model(self, model, location=True):
         """Finish a JSON request with a model, setting relevant headers, etc."""
         if location:
             location = self.notebook_location(model['name'], model['path'])
             self.set_header('Location', location)
         self.set_header('Last-Modified', model['last_modified'])
         self.finish(json.dumps(model, default=date_default))
     
     @web.authenticated
     @json_errors
     def get(self, path='', name=None):
         """Return a Notebook or list of notebooks.
 
         * GET with path and no notebook name lists notebooks in a directory
         * GET with path and notebook name returns notebook JSON
         """
         nbm = self.notebook_manager
         # Check to see if a notebook name was given
         if name is None:
             # List notebooks in 'path'
             notebooks = nbm.list_notebooks(path)
             self.finish(json.dumps(notebooks, default=date_default))
             return
         # get and return notebook representation
         model = nbm.get_notebook_model(name, path)
         self._finish_model(model, location=False)
 
     @web.authenticated
     @json_errors
     def patch(self, path='', name=None):
         """PATCH renames a notebook without re-uploading content."""
         nbm = self.notebook_manager
         if name is None:
             raise web.HTTPError(400, u'Notebook name missing')
         model = self.get_json_body()
         if model is None:
             raise web.HTTPError(400, u'JSON body missing')
         model = nbm.update_notebook_model(model, name, path)
         self._finish_model(model)
     
     def _copy_notebook(self, copy_from, path, copy_to=None):
         """Copy a notebook in path, optionally specifying the new name.
         
         Only support copying within the same directory.
         """
         self.log.info(u"Copying notebook from %s/%s to %s/%s",
             path, copy_from,
             path, copy_to or '',
         )
         model = self.notebook_manager.copy_notebook(copy_from, copy_to, path)
         self.set_status(201)
         self._finish_model(model)
     
     def _upload_notebook(self, model, path, name=None):
         """Upload a notebook
         
         If name specified, create it in path/name.
         """
         self.log.info(u"Uploading notebook to %s/%s", path, name or '')
         if name:
             model['name'] = name
         
         model = self.notebook_manager.create_notebook_model(model, path)
         self.set_status(201)
         self._finish_model(model)
     
     def _create_empty_notebook(self, path, name=None):
         """Create an empty notebook in path
         
         If name specified, create it in path/name.
         """
         self.log.info(u"Creating new notebook in %s/%s", path, name or '')
         model = {}
         if name:
             model['name'] = name
         model = self.notebook_manager.create_notebook_model(model, path=path)
         self.set_status(201)
         self._finish_model(model)
     
     def _save_notebook(self, model, path, name):
         """Save an existing notebook."""
         self.log.info(u"Saving notebook at %s/%s", path, name)
         model = self.notebook_manager.save_notebook_model(model, name, path)
         if model['path'] != path.strip('/') or model['name'] != name:
             # a rename happened, set Location header
             location = True
         else:
             location = False
         self._finish_model(model, location)
     
     @web.authenticated
     @json_errors
     def post(self, path='', name=None):
         """Create a new notebook in the specified path.
         
         POST creates new notebooks. The server always decides on the notebook name.
         
-        POST /api/notebooks/path : new untitled notebook in path
-            If content specified, upload a notebook, otherwise start empty.
-        POST /api/notebooks/path?copy=OtherNotebook.ipynb : new copy of OtherNotebook in path
+        POST /api/notebooks/path
+          New untitled notebook in path. If content specified, upload a
+          notebook, otherwise start empty.
+        POST /api/notebooks/path?copy=OtherNotebook.ipynb
+          New copy of OtherNotebook in path
         """
         
         if name is not None:
             raise web.HTTPError(400, "Only POST to directories. Use PUT for full names.")
         
         model = self.get_json_body()
         
         if model is not None:
             copy_from = model.get('copy_from')
             if copy_from:
                 if model.get('content'):
                     raise web.HTTPError(400, "Can't upload and copy at the same time.")
                 self._copy_notebook(copy_from, path)
             else:
                 self._upload_notebook(model, path)
         else:
             self._create_empty_notebook(path)
 
     @web.authenticated
     @json_errors
     def put(self, path='', name=None):
         """Saves the notebook in the location specified by name and path.
         
-        PUT /api/notebooks/path/Name.ipynb : Save notebook at path/Name.ipynb
-            Notebook structure is specified in `content` key of JSON request body.
-            If content is not specified, create a new empty notebook.
-        PUT /api/notebooks/path/Name.ipynb?copy=OtherNotebook.ipynb : copy OtherNotebook to Name
+        PUT is very similar to POST, but the requester specifies the name,
+        whereas with POST, the server picks the name.
         
-        POST and PUT are basically the same. The only difference:
-        
-        - with POST, server always picks the name, with PUT the requester does
+        PUT /api/notebooks/path/Name.ipynb
+          Save notebook at ``path/Name.ipynb``. Notebook structure is specified
+          in `content` key of JSON request body. If content is not specified,
+          create a new empty notebook.
+        PUT /api/notebooks/path/Name.ipynb?copy=OtherNotebook.ipynb
+          Copy OtherNotebook to Name
         """
         if name is None:
             raise web.HTTPError(400, "Only PUT to full names. Use POST for directories.")
         
         model = self.get_json_body()
         if model:
             copy_from = model.get('copy_from')
             if copy_from:
                 if model.get('content'):
                     raise web.HTTPError(400, "Can't upload and copy at the same time.")
                 self._copy_notebook(copy_from, path, name)
             elif self.notebook_manager.notebook_exists(name, path):
                 self._save_notebook(model, path, name)
             else:
                 self._upload_notebook(model, path, name)
         else:
             self._create_empty_notebook(path, name)
 
     @web.authenticated
     @json_errors
     def delete(self, path='', name=None):
         """delete the notebook in the given notebook path"""
         nbm = self.notebook_manager
         nbm.delete_notebook_model(name, path)
         self.set_status(204)
         self.finish()
 
 
 class NotebookCheckpointsHandler(IPythonHandler):
     
     SUPPORTED_METHODS = ('GET', 'POST')
     
     @web.authenticated
     @json_errors
     def get(self, path='', name=None):
         """get lists checkpoints for a notebook"""
         nbm = self.notebook_manager
         checkpoints = nbm.list_checkpoints(name, path)
         data = json.dumps(checkpoints, default=date_default)
         self.finish(data)
     
     @web.authenticated
     @json_errors
     def post(self, path='', name=None):
         """post creates a new checkpoint"""
         nbm = self.notebook_manager
         checkpoint = nbm.create_checkpoint(name, path)
         data = json.dumps(checkpoint, default=date_default)
         location = url_path_join(self.base_project_url, 'api/notebooks',
             path, name, 'checkpoints', checkpoint['id'])
         self.set_header('Location', url_escape(location))
         self.set_status(201)
         self.finish(data)
 
 
 class ModifyNotebookCheckpointsHandler(IPythonHandler):
     
     SUPPORTED_METHODS = ('POST', 'DELETE')
     
     @web.authenticated
     @json_errors
     def post(self, path, name, checkpoint_id):
         """post restores a notebook from a checkpoint"""
         nbm = self.notebook_manager
         nbm.restore_checkpoint(checkpoint_id, name, path)
         self.set_status(204)
         self.finish()
     
     @web.authenticated
     @json_errors
     def delete(self, path, name, checkpoint_id):
         """delete clears a checkpoint for a given notebook"""
         nbm = self.notebook_manager
         nbm.delete_checkpoint(checkpoint_id, name, path)
         self.set_status(204)
         self.finish()
         
 #-----------------------------------------------------------------------------
 # URL to handler mappings
 #-----------------------------------------------------------------------------
 
 
 _path_regex = r"(?P<path>(?:/.*)*)"
 _checkpoint_id_regex = r"(?P<checkpoint_id>[\w-]+)"
 _notebook_name_regex = r"(?P<name>[^/]+\.ipynb)"
 _notebook_path_regex = "%s/%s" % (_path_regex, _notebook_name_regex)
 
 default_handlers = [
     (r"/api/notebooks%s/checkpoints" % _notebook_path_regex, NotebookCheckpointsHandler),
     (r"/api/notebooks%s/checkpoints/%s" % (_notebook_path_regex, _checkpoint_id_regex),
         ModifyNotebookCheckpointsHandler),
     (r"/api/notebooks%s" % _notebook_path_regex, NotebookHandler),
     (r"/api/notebooks%s" % _path_regex, NotebookHandler),
 ]
 
 
 

IPython/kernel/channels.py

@@ -1,649 +1,649 b''
 """Base classes to manage a Client's interaction with a running kernel
 """
 
 #-----------------------------------------------------------------------------
 #  Copyright (C) 2013  The IPython Development Team
 #
 #  Distributed under the terms of the BSD License.  The full license is in
 #  the file COPYING, distributed as part of this software.
 #-----------------------------------------------------------------------------
 
 #-----------------------------------------------------------------------------
 # Imports
 #-----------------------------------------------------------------------------
 
 from __future__ import absolute_import
 
 # Standard library imports
 import atexit
 import errno
 from threading import Thread
 import time
 
 import zmq
 # import ZMQError in top-level namespace, to avoid ugly attribute-error messages
 # during garbage collection of threads at exit:
 from zmq import ZMQError
 from zmq.eventloop import ioloop, zmqstream
 
 # Local imports
 from .channelsabc import (
     ShellChannelABC, IOPubChannelABC,
     HBChannelABC, StdInChannelABC,
 )
 from IPython.utils.py3compat import string_types, iteritems
 
 #-----------------------------------------------------------------------------
 # Constants and exceptions
 #-----------------------------------------------------------------------------
 
 class InvalidPortNumber(Exception):
     pass
 
 #-----------------------------------------------------------------------------
 # Utility functions
 #-----------------------------------------------------------------------------
 
 # some utilities to validate message structure, these might get moved elsewhere
 # if they prove to have more generic utility
 
 def validate_string_list(lst):
     """Validate that the input is a list of strings.
 
     Raises ValueError if not."""
     if not isinstance(lst, list):
         raise ValueError('input %r must be a list' % lst)
     for x in lst:
         if not isinstance(x, string_types):
             raise ValueError('element %r in list must be a string' % x)
 
 
 def validate_string_dict(dct):
     """Validate that the input is a dict with string keys and values.
 
     Raises ValueError if not."""
     for k,v in iteritems(dct):
         if not isinstance(k, string_types):
             raise ValueError('key %r in dict must be a string' % k)
         if not isinstance(v, string_types):
             raise ValueError('value %r in dict must be a string' % v)
 
 
 #-----------------------------------------------------------------------------
 # ZMQ Socket Channel classes
 #-----------------------------------------------------------------------------
 
 class ZMQSocketChannel(Thread):
     """The base class for the channels that use ZMQ sockets."""
     context = None
     session = None
     socket = None
     ioloop = None
     stream = None
     _address = None
     _exiting = False
     proxy_methods = []
 
     def __init__(self, context, session, address):
         """Create a channel.
 
         Parameters
         ----------
         context : :class:`zmq.Context`
             The ZMQ context to use.
         session : :class:`session.Session`
             The session to use.
         address : zmq url
             Standard (ip, port) tuple that the kernel is listening on.
         """
         super(ZMQSocketChannel, self).__init__()
         self.daemon = True
 
         self.context = context
         self.session = session
         if isinstance(address, tuple):
             if address[1] == 0:
                 message = 'The port number for a channel cannot be 0.'
                 raise InvalidPortNumber(message)
             address = "tcp://%s:%i" % address
         self._address = address
         atexit.register(self._notice_exit)
 
     def _notice_exit(self):
         self._exiting = True
 
     def _run_loop(self):
         """Run my loop, ignoring EINTR events in the poller"""
         while True:
             try:
                 self.ioloop.start()
             except ZMQError as e:
                 if e.errno == errno.EINTR:
                     continue
                 else:
                     raise
             except Exception:
                 if self._exiting:
                     break
                 else:
                     raise
             else:
                 break
 
     def stop(self):
         """Stop the channel's event loop and join its thread.
 
-        This calls :method:`Thread.join` and returns when the thread
+        This calls :meth:`~threading.Thread.join` and returns when the thread
         terminates. :class:`RuntimeError` will be raised if
-        :method:`self.start` is called again.
+        :meth:`~threading.Thread.start` is called again.
         """
         self.join()
 
     @property
     def address(self):
         """Get the channel's address as a zmq url string.
 
         These URLS have the form: 'tcp://127.0.0.1:5555'.
         """
         return self._address
 
     def _queue_send(self, msg):
         """Queue a message to be sent from the IOLoop's thread.
 
         Parameters
         ----------
         msg : message to send
 
         This is threadsafe, as it uses IOLoop.add_callback to give the loop's
         thread control of the action.
         """
         def thread_send():
             self.session.send(self.stream, msg)
         self.ioloop.add_callback(thread_send)
 
     def _handle_recv(self, msg):
         """Callback for stream.on_recv.
 
         Unpacks message, and calls handlers with it.
         """
         ident,smsg = self.session.feed_identities(msg)
         self.call_handlers(self.session.unserialize(smsg))
 
 
 
 class ShellChannel(ZMQSocketChannel):
     """The shell channel for issuing request/replies to the kernel."""
 
     command_queue = None
     # flag for whether execute requests should be allowed to call raw_input:
     allow_stdin = True
     proxy_methods = [
         'execute',
         'complete',
         'object_info',
         'history',
         'kernel_info',
         'shutdown',
     ]
 
     def __init__(self, context, session, address):
         super(ShellChannel, self).__init__(context, session, address)
         self.ioloop = ioloop.IOLoop()
 
     def run(self):
         """The thread's main activity.  Call start() instead."""
         self.socket = self.context.socket(zmq.DEALER)
         self.socket.setsockopt(zmq.IDENTITY, self.session.bsession)
         self.socket.connect(self.address)
         self.stream = zmqstream.ZMQStream(self.socket, self.ioloop)
         self.stream.on_recv(self._handle_recv)
         self._run_loop()
         try:
             self.socket.close()
         except:
             pass
 
     def stop(self):
         """Stop the channel's event loop and join its thread."""
         self.ioloop.stop()
         super(ShellChannel, self).stop()
 
     def call_handlers(self, msg):
         """This method is called in the ioloop thread when a message arrives.
 
         Subclasses should override this method to handle incoming messages.
         It is important to remember that this method is called in the thread
         so that some logic must be done to ensure that the application level
         handlers are called in the application thread.
         """
         raise NotImplementedError('call_handlers must be defined in a subclass.')
 
     def execute(self, code, silent=False, store_history=True,
                 user_variables=None, user_expressions=None, allow_stdin=None):
         """Execute code in the kernel.
 
         Parameters
         ----------
         code : str
             A string of Python code.
 
         silent : bool, optional (default False)
             If set, the kernel will execute the code as quietly possible, and
             will force store_history to be False.
 
         store_history : bool, optional (default True)
             If set, the kernel will store command history.  This is forced
             to be False if silent is True.
 
         user_variables : list, optional
             A list of variable names to pull from the user's namespace.  They
             will come back as a dict with these names as keys and their
             :func:`repr` as values.
 
         user_expressions : dict, optional
             A dict mapping names to expressions to be evaluated in the user's
             dict. The expression values are returned as strings formatted using
             :func:`repr`.
 
         allow_stdin : bool, optional (default self.allow_stdin)
             Flag for whether the kernel can send stdin requests to frontends.
 
             Some frontends (e.g. the Notebook) do not support stdin requests.
             If raw_input is called from code executed from such a frontend, a
             StdinNotImplementedError will be raised.
 
         Returns
         -------
         The msg_id of the message sent.
         """
         if user_variables is None:
             user_variables = []
         if user_expressions is None:
             user_expressions = {}
         if allow_stdin is None:
             allow_stdin = self.allow_stdin
 
 
         # Don't waste network traffic if inputs are invalid
         if not isinstance(code, string_types):
             raise ValueError('code %r must be a string' % code)
         validate_string_list(user_variables)
         validate_string_dict(user_expressions)
 
         # Create class for content/msg creation. Related to, but possibly
         # not in Session.
         content = dict(code=code, silent=silent, store_history=store_history,
                        user_variables=user_variables,
                        user_expressions=user_expressions,
                        allow_stdin=allow_stdin,
                        )
         msg = self.session.msg('execute_request', content)
         self._queue_send(msg)
         return msg['header']['msg_id']
 
     def complete(self, text, line, cursor_pos, block=None):
         """Tab complete text in the kernel's namespace.
 
         Parameters
         ----------
         text : str
             The text to complete.
         line : str
             The full line of text that is the surrounding context for the
             text to complete.
         cursor_pos : int
             The position of the cursor in the line where the completion was
             requested.
         block : str, optional
             The full block of code in which the completion is being requested.
 
         Returns
         -------
         The msg_id of the message sent.
         """
         content = dict(text=text, line=line, block=block, cursor_pos=cursor_pos)
         msg = self.session.msg('complete_request', content)
         self._queue_send(msg)
         return msg['header']['msg_id']
 
     def object_info(self, oname, detail_level=0):
         """Get metadata information about an object in the kernel's namespace.
 
         Parameters
         ----------
         oname : str
             A string specifying the object name.
         detail_level : int, optional
             The level of detail for the introspection (0-2)
 
         Returns
         -------
         The msg_id of the message sent.
         """
         content = dict(oname=oname, detail_level=detail_level)
         msg = self.session.msg('object_info_request', content)
         self._queue_send(msg)
         return msg['header']['msg_id']
 
     def history(self, raw=True, output=False, hist_access_type='range', **kwargs):
         """Get entries from the kernel's history list.
 
         Parameters
         ----------
         raw : bool
             If True, return the raw input.
         output : bool
             If True, then return the output as well.
         hist_access_type : str
             'range' (fill in session, start and stop params), 'tail' (fill in n)
              or 'search' (fill in pattern param).
 
         session : int
             For a range request, the session from which to get lines. Session
             numbers are positive integers; negative ones count back from the
             current session.
         start : int
             The first line number of a history range.
         stop : int
             The final (excluded) line number of a history range.
 
         n : int
             The number of lines of history to get for a tail request.
 
         pattern : str
             The glob-syntax pattern for a search request.
 
         Returns
         -------
         The msg_id of the message sent.
         """
         content = dict(raw=raw, output=output, hist_access_type=hist_access_type,
                                                                     **kwargs)
         msg = self.session.msg('history_request', content)
         self._queue_send(msg)
         return msg['header']['msg_id']
 
     def kernel_info(self):
         """Request kernel info."""
         msg = self.session.msg('kernel_info_request')
         self._queue_send(msg)
         return msg['header']['msg_id']
 
     def shutdown(self, restart=False):
         """Request an immediate kernel shutdown.
 
         Upon receipt of the (empty) reply, client code can safely assume that
         the kernel has shut down and it's safe to forcefully terminate it if
         it's still alive.
 
         The kernel will send the reply via a function registered with Python's
         atexit module, ensuring it's truly done as the kernel is done with all
         normal operation.
         """
         # Send quit message to kernel. Once we implement kernel-side setattr,
         # this should probably be done that way, but for now this will do.
         msg = self.session.msg('shutdown_request', {'restart':restart})
         self._queue_send(msg)
         return msg['header']['msg_id']
 
 
 
 class IOPubChannel(ZMQSocketChannel):
     """The iopub channel which listens for messages that the kernel publishes.
 
     This channel is where all output is published to frontends.
     """
 
     def __init__(self, context, session, address):
         super(IOPubChannel, self).__init__(context, session, address)
         self.ioloop = ioloop.IOLoop()
 
     def run(self):
         """The thread's main activity.  Call start() instead."""
         self.socket = self.context.socket(zmq.SUB)
         self.socket.setsockopt(zmq.SUBSCRIBE,b'')
         self.socket.setsockopt(zmq.IDENTITY, self.session.bsession)
         self.socket.connect(self.address)
         self.stream = zmqstream.ZMQStream(self.socket, self.ioloop)
         self.stream.on_recv(self._handle_recv)
         self._run_loop()
         try:
             self.socket.close()
         except:
             pass
 
     def stop(self):
         """Stop the channel's event loop and join its thread."""
         self.ioloop.stop()
         super(IOPubChannel, self).stop()
 
     def call_handlers(self, msg):
         """This method is called in the ioloop thread when a message arrives.
 
         Subclasses should override this method to handle incoming messages.
         It is important to remember that this method is called in the thread
         so that some logic must be done to ensure that the application leve
         handlers are called in the application thread.
         """
         raise NotImplementedError('call_handlers must be defined in a subclass.')
 
     def flush(self, timeout=1.0):
         """Immediately processes all pending messages on the iopub channel.
 
-        Callers should use this method to ensure that :method:`call_handlers`
+        Callers should use this method to ensure that :meth:`call_handlers`
         has been called for all messages that have been received on the
         0MQ SUB socket of this channel.
 
         This method is thread safe.
 
         Parameters
         ----------
         timeout : float, optional
             The maximum amount of time to spend flushing, in seconds. The
             default is one second.
         """
         # We do the IOLoop callback process twice to ensure that the IOLoop
         # gets to perform at least one full poll.
         stop_time = time.time() + timeout
         for i in range(2):
             self._flushed = False
             self.ioloop.add_callback(self._flush)
             while not self._flushed and time.time() < stop_time:
                 time.sleep(0.01)
 
     def _flush(self):
         """Callback for :method:`self.flush`."""
         self.stream.flush()
         self._flushed = True
 
 
 class StdInChannel(ZMQSocketChannel):
     """The stdin channel to handle raw_input requests that the kernel makes."""
 
     msg_queue = None
     proxy_methods = ['input']
 
     def __init__(self, context, session, address):
         super(StdInChannel, self).__init__(context, session, address)
         self.ioloop = ioloop.IOLoop()
 
     def run(self):
         """The thread's main activity.  Call start() instead."""
         self.socket = self.context.socket(zmq.DEALER)
         self.socket.setsockopt(zmq.IDENTITY, self.session.bsession)
         self.socket.connect(self.address)
         self.stream = zmqstream.ZMQStream(self.socket, self.ioloop)
         self.stream.on_recv(self._handle_recv)
         self._run_loop()
         try:
             self.socket.close()
         except:
             pass
 
     def stop(self):
         """Stop the channel's event loop and join its thread."""
         self.ioloop.stop()
         super(StdInChannel, self).stop()
 
     def call_handlers(self, msg):
         """This method is called in the ioloop thread when a message arrives.
 
         Subclasses should override this method to handle incoming messages.
         It is important to remember that this method is called in the thread
         so that some logic must be done to ensure that the application leve
         handlers are called in the application thread.
         """
         raise NotImplementedError('call_handlers must be defined in a subclass.')
 
     def input(self, string):
         """Send a string of raw input to the kernel."""
         content = dict(value=string)
         msg = self.session.msg('input_reply', content)
         self._queue_send(msg)
 
 
 class HBChannel(ZMQSocketChannel):
     """The heartbeat channel which monitors the kernel heartbeat.
 
     Note that the heartbeat channel is paused by default. As long as you start
     this channel, the kernel manager will ensure that it is paused and un-paused
     as appropriate.
     """
 
     time_to_dead = 3.0
     socket = None
     poller = None
     _running = None
     _pause = None
     _beating = None
 
     def __init__(self, context, session, address):
         super(HBChannel, self).__init__(context, session, address)
         self._running = False
         self._pause =True
         self.poller = zmq.Poller()
 
     def _create_socket(self):
         if self.socket is not None:
             # close previous socket, before opening a new one
             self.poller.unregister(self.socket)
             self.socket.close()
         self.socket = self.context.socket(zmq.REQ)
         self.socket.setsockopt(zmq.LINGER, 0)
         self.socket.connect(self.address)
 
         self.poller.register(self.socket, zmq.POLLIN)
 
     def _poll(self, start_time):
         """poll for heartbeat replies until we reach self.time_to_dead.
 
         Ignores interrupts, and returns the result of poll(), which
         will be an empty list if no messages arrived before the timeout,
         or the event tuple if there is a message to receive.
         """
 
         until_dead = self.time_to_dead - (time.time() - start_time)
         # ensure poll at least once
         until_dead = max(until_dead, 1e-3)
         events = []
         while True:
             try:
                 events = self.poller.poll(1000 * until_dead)
             except ZMQError as e:
                 if e.errno == errno.EINTR:
                     # ignore interrupts during heartbeat
                     # this may never actually happen
                     until_dead = self.time_to_dead - (time.time() - start_time)
                     until_dead = max(until_dead, 1e-3)
                     pass
                 else:
                     raise
             except Exception:
                 if self._exiting:
                     break
                 else:
                     raise
             else:
                 break
         return events
 
     def run(self):
         """The thread's main activity.  Call start() instead."""
         self._create_socket()
         self._running = True
         self._beating = True
 
         while self._running:
             if self._pause:
                 # just sleep, and skip the rest of the loop
                 time.sleep(self.time_to_dead)
                 continue
 
             since_last_heartbeat = 0.0
             # io.rprint('Ping from HB channel') # dbg
             # no need to catch EFSM here, because the previous event was
             # either a recv or connect, which cannot be followed by EFSM
             self.socket.send(b'ping')
             request_time = time.time()
             ready = self._poll(request_time)
             if ready:
                 self._beating = True
                 # the poll above guarantees we have something to recv
                 self.socket.recv()
                 # sleep the remainder of the cycle
                 remainder = self.time_to_dead - (time.time() - request_time)
                 if remainder > 0:
                     time.sleep(remainder)
                 continue
             else:
                 # nothing was received within the time limit, signal heart failure
                 self._beating = False
                 since_last_heartbeat = time.time() - request_time
                 self.call_handlers(since_last_heartbeat)
                 # and close/reopen the socket, because the REQ/REP cycle has been broken
                 self._create_socket()
                 continue
         try:
             self.socket.close()
         except:
             pass
 
     def pause(self):
         """Pause the heartbeat."""
         self._pause = True
 
     def unpause(self):
         """Unpause the heartbeat."""
         self._pause = False
 
     def is_beating(self):
         """Is the heartbeat running and responsive (and not paused)."""
         if self.is_alive() and not self._pause and self._beating:
             return True
         else:
             return False
 
     def stop(self):
         """Stop the channel's event loop and join its thread."""
         self._running = False
         super(HBChannel, self).stop()
 
     def call_handlers(self, since_last_heartbeat):
         """This method is called in the ioloop thread when a message arrives.
 
         Subclasses should override this method to handle incoming messages.
         It is important to remember that this method is called in the thread
         so that some logic must be done to ensure that the application level
         handlers are called in the application thread.
         """
         raise NotImplementedError('call_handlers must be defined in a subclass.')
 
 
 #---------------------------------------------------------------------#-----------------------------------------------------------------------------
 # ABC Registration
 #-----------------------------------------------------------------------------
 
 ShellChannelABC.register(ShellChannel)
 IOPubChannelABC.register(IOPubChannel)
 HBChannelABC.register(HBChannel)
 StdInChannelABC.register(StdInChannel)

IPython/kernel/client.py

@@ -1,206 +1,206 b''
 """Base class to manage the interaction with a running kernel
 """
 
 #-----------------------------------------------------------------------------
 #  Copyright (C) 2013  The IPython Development Team
 #
 #  Distributed under the terms of the BSD License.  The full license is in
 #  the file COPYING, distributed as part of this software.
 #-----------------------------------------------------------------------------
 
 #-----------------------------------------------------------------------------
 # Imports
 #-----------------------------------------------------------------------------
 
 from __future__ import absolute_import
 
 import zmq
 
 # Local imports
 from IPython.config.configurable import LoggingConfigurable
 from IPython.utils.traitlets import (
     Any, Instance, Type,
 )
 
 from .zmq.session import Session
 from .channels import (
     ShellChannel, IOPubChannel,
     HBChannel, StdInChannel,
 )
 from .clientabc import KernelClientABC
 from .connect import ConnectionFileMixin
 
 
 #-----------------------------------------------------------------------------
 # Main kernel client class
 #-----------------------------------------------------------------------------
 
 class KernelClient(LoggingConfigurable, ConnectionFileMixin):
     """Communicates with a single kernel on any host via zmq channels.
 
     There are four channels associated with each kernel:
 
     * shell: for request/reply calls to the kernel.
     * iopub: for the kernel to publish results to frontends.
     * hb: for monitoring the kernel's heartbeat.
     * stdin: for frontends to reply to raw_input calls in the kernel.
 
     The methods of the channels are exposed as methods of the client itself
     (KernelClient.execute, complete, history, etc.).
     See the channels themselves for documentation of these methods.
 
     """
 
     # The PyZMQ Context to use for communication with the kernel.
     context = Instance(zmq.Context)
     def _context_default(self):
         return zmq.Context.instance()
 
     # The Session to use for communication with the kernel.
     session = Instance(Session)
     def _session_default(self):
         return Session(parent=self)
 
     # The classes to use for the various channels
     shell_channel_class = Type(ShellChannel)
     iopub_channel_class = Type(IOPubChannel)
     stdin_channel_class = Type(StdInChannel)
     hb_channel_class = Type(HBChannel)
 
     # Protected traits
     _shell_channel = Any
     _iopub_channel = Any
     _stdin_channel = Any
     _hb_channel = Any
 
     #--------------------------------------------------------------------------
     # Channel proxy methods
     #--------------------------------------------------------------------------
 
     def _get_msg(channel, *args, **kwargs):
         return channel.get_msg(*args, **kwargs)
 
     def get_shell_msg(self, *args, **kwargs):
         """Get a message from the shell channel"""
         return self.shell_channel.get_msg(*args, **kwargs)
 
     def get_iopub_msg(self, *args, **kwargs):
         """Get a message from the iopub channel"""
         return self.iopub_channel.get_msg(*args, **kwargs)
 
     def get_stdin_msg(self, *args, **kwargs):
         """Get a message from the stdin channel"""
         return self.stdin_channel.get_msg(*args, **kwargs)
 
     #--------------------------------------------------------------------------
     # Channel management methods
     #--------------------------------------------------------------------------
 
     def start_channels(self, shell=True, iopub=True, stdin=True, hb=True):
         """Starts the channels for this kernel.
 
         This will create the channels if they do not exist and then start
         them (their activity runs in a thread). If port numbers of 0 are
         being used (random ports) then you must first call
-        :method:`start_kernel`. If the channels have been stopped and you
+        :meth:`start_kernel`. If the channels have been stopped and you
         call this, :class:`RuntimeError` will be raised.
         """
         if shell:
             self.shell_channel.start()
             for method in self.shell_channel.proxy_methods:
                 setattr(self, method, getattr(self.shell_channel, method))
         if iopub:
             self.iopub_channel.start()
             for method in self.iopub_channel.proxy_methods:
                 setattr(self, method, getattr(self.iopub_channel, method))
         if stdin:
             self.stdin_channel.start()
             for method in self.stdin_channel.proxy_methods:
                 setattr(self, method, getattr(self.stdin_channel, method))
             self.shell_channel.allow_stdin = True
         else:
             self.shell_channel.allow_stdin = False
         if hb:
             self.hb_channel.start()
 
     def stop_channels(self):
         """Stops all the running channels for this kernel.
 
         This stops their event loops and joins their threads.
         """
         if self.shell_channel.is_alive():
             self.shell_channel.stop()
         if self.iopub_channel.is_alive():
             self.iopub_channel.stop()
         if self.stdin_channel.is_alive():
             self.stdin_channel.stop()
         if self.hb_channel.is_alive():
             self.hb_channel.stop()
 
     @property
     def channels_running(self):
         """Are any of the channels created and running?"""
         return (self.shell_channel.is_alive() or self.iopub_channel.is_alive() or
                 self.stdin_channel.is_alive() or self.hb_channel.is_alive())
 
     @property
     def shell_channel(self):
         """Get the shell channel object for this kernel."""
         if self._shell_channel is None:
             url = self._make_url('shell')
             self.log.debug("connecting shell channel to %s", url)
             self._shell_channel = self.shell_channel_class(
                 self.context, self.session, url
             )
         return self._shell_channel
 
     @property
     def iopub_channel(self):
         """Get the iopub channel object for this kernel."""
         if self._iopub_channel is None:
             url = self._make_url('iopub')
             self.log.debug("connecting iopub channel to %s", url)
             self._iopub_channel = self.iopub_channel_class(
                 self.context, self.session, url
             )
         return self._iopub_channel
 
     @property
     def stdin_channel(self):
         """Get the stdin channel object for this kernel."""
         if self._stdin_channel is None:
             url = self._make_url('stdin')
             self.log.debug("connecting stdin channel to %s", url)
             self._stdin_channel = self.stdin_channel_class(
                 self.context, self.session, url
             )
         return self._stdin_channel
 
     @property
     def hb_channel(self):
         """Get the hb channel object for this kernel."""
         if self._hb_channel is None:
             url = self._make_url('hb')
             self.log.debug("connecting heartbeat channel to %s", url)
             self._hb_channel = self.hb_channel_class(
                 self.context, self.session, url
             )
         return self._hb_channel
 
     def is_alive(self):
         """Is the kernel process still running?"""
         if self._hb_channel is not None:
             # We didn't start the kernel with this KernelManager so we
             # use the heartbeat.
             return self._hb_channel.is_beating()
         else:
             # no heartbeat and not local, we can't tell if it's running,
             # so naively return True
             return True
 
 
 #-----------------------------------------------------------------------------
 # ABC Registration
 #-----------------------------------------------------------------------------
 
 KernelClientABC.register(KernelClient)

IPython/kernel/manager.py

@@ -1,385 +1,385 b''
 """Base class to manage a running kernel"""
 
 #-----------------------------------------------------------------------------
 #  Copyright (C) 2013  The IPython Development Team
 #
 #  Distributed under the terms of the BSD License.  The full license is in
 #  the file COPYING, distributed as part of this software.
 #-----------------------------------------------------------------------------
 
 #-----------------------------------------------------------------------------
 # Imports
 #-----------------------------------------------------------------------------
 
 from __future__ import absolute_import
 
 # Standard library imports
 import re
 import signal
 import sys
 import time
 
 import zmq
 
 # Local imports
 from IPython.config.configurable import LoggingConfigurable
 from IPython.utils.importstring import import_item
 from IPython.utils.localinterfaces import is_local_ip, local_ips
 from IPython.utils.traitlets import (
     Any, Instance, Unicode, List, Bool, Type, DottedObjectName
 )
 from IPython.kernel import (
     make_ipkernel_cmd,
     launch_kernel,
 )
 from .connect import ConnectionFileMixin
 from .zmq.session import Session
 from .managerabc import (
     KernelManagerABC
 )
 
 #-----------------------------------------------------------------------------
 # Main kernel manager class
 #-----------------------------------------------------------------------------
 
 class KernelManager(LoggingConfigurable, ConnectionFileMixin):
     """Manages a single kernel in a subprocess on this host.
 
     This version starts kernels with Popen.
     """
 
     # The PyZMQ Context to use for communication with the kernel.
     context = Instance(zmq.Context)
     def _context_default(self):
         return zmq.Context.instance()
 
     # The Session to use for communication with the kernel.
     session = Instance(Session)
     def _session_default(self):
         return Session(parent=self)
 
     # the class to create with our `client` method
     client_class = DottedObjectName('IPython.kernel.blocking.BlockingKernelClient')
     client_factory = Type()
     def _client_class_changed(self, name, old, new):
         self.client_factory = import_item(str(new))
 
     # The kernel process with which the KernelManager is communicating.
     # generally a Popen instance
     kernel = Any()
 
     kernel_cmd = List(Unicode, config=True,
         help="""The Popen Command to launch the kernel.
         Override this if you have a custom
         """
     )
 
     def _kernel_cmd_changed(self, name, old, new):
         self.ipython_kernel = False
 
     ipython_kernel = Bool(True)
 
     # Protected traits
     _launch_args = Any()
     _control_socket = Any()
 
     _restarter = Any()
 
     autorestart = Bool(False, config=True,
         help="""Should we autorestart the kernel if it dies."""
     )
 
     def __del__(self):
         self._close_control_socket()
         self.cleanup_connection_file()
 
     #--------------------------------------------------------------------------
     # Kernel restarter
     #--------------------------------------------------------------------------
 
     def start_restarter(self):
         pass
 
     def stop_restarter(self):
         pass
 
     def add_restart_callback(self, callback, event='restart'):
         """register a callback to be called when a kernel is restarted"""
         if self._restarter is None:
             return
         self._restarter.add_callback(callback, event)
 
     def remove_restart_callback(self, callback, event='restart'):
         """unregister a callback to be called when a kernel is restarted"""
         if self._restarter is None:
             return
         self._restarter.remove_callback(callback, event)
 
     #--------------------------------------------------------------------------
     # create a Client connected to our Kernel
     #--------------------------------------------------------------------------
 
     def client(self, **kwargs):
         """Create a client configured to connect to our kernel"""
         if self.client_factory is None:
             self.client_factory = import_item(self.client_class)
 
         kw = {}
         kw.update(self.get_connection_info())
         kw.update(dict(
             connection_file=self.connection_file,
             session=self.session,
             parent=self,
         ))
 
         # add kwargs last, for manual overrides
         kw.update(kwargs)
         return self.client_factory(**kw)
 
     #--------------------------------------------------------------------------
     # Kernel management
     #--------------------------------------------------------------------------
 
     def format_kernel_cmd(self, **kw):
         """replace templated args (e.g. {connection_file})"""
         if self.kernel_cmd:
             cmd = self.kernel_cmd
         else:
             cmd = make_ipkernel_cmd(
                 'from IPython.kernel.zmq.kernelapp import main; main()',
                 **kw
             )
         ns = dict(connection_file=self.connection_file)
         ns.update(self._launch_args)
         
         pat = re.compile(r'\{([A-Za-z0-9_]+)\}')
         def from_ns(match):
             """Get the key out of ns if it's there, otherwise no change."""
             return ns.get(match.group(1), match.group())
         
         return [ pat.sub(from_ns, arg) for arg in cmd ]
 
     def _launch_kernel(self, kernel_cmd, **kw):
         """actually launch the kernel
 
         override in a subclass to launch kernel subprocesses differently
         """
         return launch_kernel(kernel_cmd, **kw)
 
     # Control socket used for polite kernel shutdown
 
     def _connect_control_socket(self):
         if self._control_socket is None:
             self._control_socket = self.connect_control()
             self._control_socket.linger = 100
 
     def _close_control_socket(self):
         if self._control_socket is None:
             return
         self._control_socket.close()
         self._control_socket = None
 
     def start_kernel(self, **kw):
         """Starts a kernel on this host in a separate process.
 
         If random ports (port=0) are being used, this method must be called
         before the channels are created.
 
-        Parameters:
-        -----------
+        Parameters
+        ----------
         **kw : optional
              keyword arguments that are passed down to build the kernel_cmd
              and launching the kernel (e.g. Popen kwargs).
         """
         if self.transport == 'tcp' and not is_local_ip(self.ip):
             raise RuntimeError("Can only launch a kernel on a local interface. "
                                "Make sure that the '*_address' attributes are "
                                "configured properly. "
                                "Currently valid addresses are: %s" % local_ips()
                                )
 
         # write connection file / get default ports
         self.write_connection_file()
 
         # save kwargs for use in restart
         self._launch_args = kw.copy()
         # build the Popen cmd
         kernel_cmd = self.format_kernel_cmd(**kw)
         # launch the kernel subprocess
         self.kernel = self._launch_kernel(kernel_cmd,
                                     ipython_kernel=self.ipython_kernel,
                                     **kw)
         self.start_restarter()
         self._connect_control_socket()
 
     def _send_shutdown_request(self, restart=False):
         """TODO: send a shutdown request via control channel"""
         content = dict(restart=restart)
         msg = self.session.msg("shutdown_request", content=content)
         self.session.send(self._control_socket, msg)
 
     def shutdown_kernel(self, now=False, restart=False):
         """Attempts to the stop the kernel process cleanly.
 
         This attempts to shutdown the kernels cleanly by:
 
         1. Sending it a shutdown message over the shell channel.
         2. If that fails, the kernel is shutdown forcibly by sending it
            a signal.
 
-        Parameters:
-        -----------
+        Parameters
+        ----------
         now : bool
             Should the kernel be forcible killed *now*. This skips the
             first, nice shutdown attempt.
         restart: bool
             Will this kernel be restarted after it is shutdown. When this
             is True, connection files will not be cleaned up.
         """
         # Stop monitoring for restarting while we shutdown.
         self.stop_restarter()
 
         # FIXME: Shutdown does not work on Windows due to ZMQ errors!
         if sys.platform == 'win32':
             self._kill_kernel()
             return
 
         if now:
             if self.has_kernel:
                 self._kill_kernel()
         else:
             # Don't send any additional kernel kill messages immediately, to give
             # the kernel a chance to properly execute shutdown actions. Wait for at
             # most 1s, checking every 0.1s.
             self._send_shutdown_request(restart=restart)
             for i in range(10):
                 if self.is_alive():
                     time.sleep(0.1)
                 else:
                     break
             else:
                 # OK, we've waited long enough.
                 if self.has_kernel:
                     self._kill_kernel()
 
         if not restart:
             self.cleanup_connection_file()
             self.cleanup_ipc_files()
         else:
             self.cleanup_ipc_files()
 
     def restart_kernel(self, now=False, **kw):
         """Restarts a kernel with the arguments that were used to launch it.
 
         If the old kernel was launched with random ports, the same ports will be
         used for the new kernel. The same connection file is used again.
 
         Parameters
         ----------
         now : bool, optional
             If True, the kernel is forcefully restarted *immediately*, without
             having a chance to do any cleanup action.  Otherwise the kernel is
             given 1s to clean up before a forceful restart is issued.
 
             In all cases the kernel is restarted, the only difference is whether
             it is given a chance to perform a clean shutdown or not.
 
         **kw : optional
             Any options specified here will overwrite those used to launch the
             kernel.
         """
         if self._launch_args is None:
             raise RuntimeError("Cannot restart the kernel. "
                                "No previous call to 'start_kernel'.")
         else:
             # Stop currently running kernel.
             self.shutdown_kernel(now=now, restart=True)
 
             # Start new kernel.
             self._launch_args.update(kw)
             self.start_kernel(**self._launch_args)
 
             # FIXME: Messages get dropped in Windows due to probable ZMQ bug
             # unless there is some delay here.
             if sys.platform == 'win32':
                 time.sleep(0.2)
 
     @property
     def has_kernel(self):
         """Has a kernel been started that we are managing."""
         return self.kernel is not None
 
     def _kill_kernel(self):
         """Kill the running kernel.
 
         This is a private method, callers should use shutdown_kernel(now=True).
         """
         if self.has_kernel:
 
             # Signal the kernel to terminate (sends SIGKILL on Unix and calls
             # TerminateProcess() on Win32).
             try:
                 self.kernel.kill()
             except OSError as e:
                 # In Windows, we will get an Access Denied error if the process
                 # has already terminated. Ignore it.
                 if sys.platform == 'win32':
                     if e.winerror != 5:
                         raise
                 # On Unix, we may get an ESRCH error if the process has already
                 # terminated. Ignore it.
                 else:
                     from errno import ESRCH
                     if e.errno != ESRCH:
                         raise
 
             # Block until the kernel terminates.
             self.kernel.wait()
             self.kernel = None
         else:
             raise RuntimeError("Cannot kill kernel. No kernel is running!")
 
     def interrupt_kernel(self):
         """Interrupts the kernel by sending it a signal.
 
         Unlike ``signal_kernel``, this operation is well supported on all
         platforms.
         """
         if self.has_kernel:
             if sys.platform == 'win32':
                 from .zmq.parentpoller import ParentPollerWindows as Poller
                 Poller.send_interrupt(self.kernel.win32_interrupt_event)
             else:
                 self.kernel.send_signal(signal.SIGINT)
         else:
             raise RuntimeError("Cannot interrupt kernel. No kernel is running!")
 
     def signal_kernel(self, signum):
         """Sends a signal to the kernel.
 
         Note that since only SIGTERM is supported on Windows, this function is
         only useful on Unix systems.
         """
         if self.has_kernel:
             self.kernel.send_signal(signum)
         else:
             raise RuntimeError("Cannot signal kernel. No kernel is running!")
 
     def is_alive(self):
         """Is the kernel process still running?"""
         if self.has_kernel:
             if self.kernel.poll() is None:
                 return True
             else:
                 return False
         else:
             # we don't have a kernel
             return False
 
 
 #-----------------------------------------------------------------------------
 # ABC Registration
 #-----------------------------------------------------------------------------
 
 KernelManagerABC.register(KernelManager)
 

IPython/kernel/zmq/parentpoller.py

@@ -1,142 +1,142 b''
 # Standard library imports.
 try:
     import ctypes
 except:
     ctypes = None
 import os
 import platform
 import time
 try:
     from _thread import interrupt_main  # Py 3
 except ImportError:
     from thread import interrupt_main  # Py 2
 from threading import Thread
 
 from IPython.utils.warn import warn
 
 
 class ParentPollerUnix(Thread):
     """ A Unix-specific daemon thread that terminates the program immediately
     when the parent process no longer exists.
     """
 
     def __init__(self):
         super(ParentPollerUnix, self).__init__()
         self.daemon = True
 
     def run(self):
         # We cannot use os.waitpid because it works only for child processes.
         from errno import EINTR
         while True:
             try:
                 if os.getppid() == 1:
                     os._exit(1)
                 time.sleep(1.0)
             except OSError as e:
                 if e.errno == EINTR:
                     continue
                 raise
 
 
 class ParentPollerWindows(Thread):
     """ A Windows-specific daemon thread that listens for a special event that
     signals an interrupt and, optionally, terminates the program immediately
     when the parent process no longer exists.
     """
 
     def __init__(self, interrupt_handle=None, parent_handle=None):
         """ Create the poller. At least one of the optional parameters must be
         provided.
 
-        Parameters:
-        -----------
+        Parameters
+        ----------
         interrupt_handle : HANDLE (int), optional
             If provided, the program will generate a Ctrl+C event when this
             handle is signaled.
 
         parent_handle : HANDLE (int), optional
             If provided, the program will terminate immediately when this
             handle is signaled.
         """
         assert(interrupt_handle or parent_handle)
         super(ParentPollerWindows, self).__init__()
         if ctypes is None:
             raise ImportError("ParentPollerWindows requires ctypes")
         self.daemon = True
         self.interrupt_handle = interrupt_handle
         self.parent_handle = parent_handle
 
     @staticmethod
     def create_interrupt_event():
         """ Create an interrupt event handle.
 
         The parent process should use this static method for creating the
         interrupt event that is passed to the child process. It should store
         this handle and use it with ``send_interrupt`` to interrupt the child
         process.
         """
         # Create a security attributes struct that permits inheritance of the
         # handle by new processes.
         # FIXME: We can clean up this mess by requiring pywin32 for IPython.
         class SECURITY_ATTRIBUTES(ctypes.Structure):
             _fields_ = [ ("nLength", ctypes.c_int),
                          ("lpSecurityDescriptor", ctypes.c_void_p),
                          ("bInheritHandle", ctypes.c_int) ]
         sa = SECURITY_ATTRIBUTES()
         sa_p = ctypes.pointer(sa)
         sa.nLength = ctypes.sizeof(SECURITY_ATTRIBUTES)
         sa.lpSecurityDescriptor = 0
         sa.bInheritHandle = 1
 
         return ctypes.windll.kernel32.CreateEventA(
             sa_p,  # lpEventAttributes
             False, # bManualReset
             False, # bInitialState
             '')    # lpName
 
     @staticmethod
     def send_interrupt(interrupt_handle):
         """ Sends an interrupt event using the specified handle.
         """
         ctypes.windll.kernel32.SetEvent(interrupt_handle)
 
     def run(self):
         """ Run the poll loop. This method never returns.
         """
         try:
             from _winapi import WAIT_OBJECT_0, INFINITE
         except ImportError:
             from _subprocess import WAIT_OBJECT_0, INFINITE
 
         # Build the list of handle to listen on.
         handles = []
         if self.interrupt_handle:
             handles.append(self.interrupt_handle)
         if self.parent_handle:
             handles.append(self.parent_handle)
         arch = platform.architecture()[0]
         c_int = ctypes.c_int64 if arch.startswith('64') else ctypes.c_int
 
         # Listen forever.
         while True:
             result = ctypes.windll.kernel32.WaitForMultipleObjects(
                 len(handles),                            # nCount
                 (c_int * len(handles))(*handles),        # lpHandles
                 False,                                   # bWaitAll
                 INFINITE)                                # dwMilliseconds
 
             if WAIT_OBJECT_0 <= result < len(handles):
                 handle = handles[result - WAIT_OBJECT_0]
 
                 if handle == self.interrupt_handle:
                     interrupt_main()
 
                 elif handle == self.parent_handle:
                     os._exit(1)
             elif result < 0:
                 # wait failed, just give up and stop polling.
                 warn("""Parent poll failed.  If the frontend dies,
                 the kernel may be left running.  Please let us know
                 about your system (bitness, Python, etc.) at
                 [e-mail]""")
                 return

IPython/kernel/zmq/session.py

@@ -1,848 +1,850 b''
 """Session object for building, serializing, sending, and receiving messages in
 IPython. The Session object supports serialization, HMAC signatures, and
 metadata on messages.
 
 Also defined here are utilities for working with Sessions:
 * A SessionFactory to be used as a base class for configurables that work with
 Sessions.
 * A Message object for convenience that allows attribute-access to the msg dict.
 
 Authors:
 
 * Min RK
 * Brian Granger
 * Fernando Perez
 """
 #-----------------------------------------------------------------------------
 #  Copyright (C) 2010-2011  The IPython Development Team
 #
 #  Distributed under the terms of the BSD License.  The full license is in
 #  the file COPYING, distributed as part of this software.
 #-----------------------------------------------------------------------------
 
 #-----------------------------------------------------------------------------
 # Imports
 #-----------------------------------------------------------------------------
 
 import hashlib
 import hmac
 import logging
 import os
 import pprint
 import random
 import uuid
 from datetime import datetime
 
 try:
     import cPickle
     pickle = cPickle
 except:
     cPickle = None
     import pickle
 
 import zmq
 from zmq.utils import jsonapi
 from zmq.eventloop.ioloop import IOLoop
 from zmq.eventloop.zmqstream import ZMQStream
 
 from IPython.config.configurable import Configurable, LoggingConfigurable
 from IPython.utils import io
 from IPython.utils.importstring import import_item
 from IPython.utils.jsonutil import extract_dates, squash_dates, date_default
 from IPython.utils.py3compat import (str_to_bytes, str_to_unicode, unicode_type,
                                      iteritems)
 from IPython.utils.traitlets import (CBytes, Unicode, Bool, Any, Instance, Set,
                                         DottedObjectName, CUnicode, Dict, Integer,
                                         TraitError,
 )
 from IPython.kernel.zmq.serialize import MAX_ITEMS, MAX_BYTES
 
 #-----------------------------------------------------------------------------
 # utility functions
 #-----------------------------------------------------------------------------
 
 def squash_unicode(obj):
     """coerce unicode back to bytestrings."""
     if isinstance(obj,dict):
         for key in obj.keys():
             obj[key] = squash_unicode(obj[key])
             if isinstance(key, unicode_type):
                 obj[squash_unicode(key)] = obj.pop(key)
     elif isinstance(obj, list):
         for i,v in enumerate(obj):
             obj[i] = squash_unicode(v)
     elif isinstance(obj, unicode_type):
         obj = obj.encode('utf8')
     return obj
 
 #-----------------------------------------------------------------------------
 # globals and defaults
 #-----------------------------------------------------------------------------
 
 # ISO8601-ify datetime objects
 json_packer = lambda obj: jsonapi.dumps(obj, default=date_default)
 json_unpacker = lambda s: jsonapi.loads(s)
 
 pickle_packer = lambda o: pickle.dumps(squash_dates(o),-1)
 pickle_unpacker = pickle.loads
 
 default_packer = json_packer
 default_unpacker = json_unpacker
 
 DELIM = b"<IDS|MSG>"
 # singleton dummy tracker, which will always report as done
 DONE = zmq.MessageTracker()
 
 #-----------------------------------------------------------------------------
 # Mixin tools for apps that use Sessions
 #-----------------------------------------------------------------------------
 
 session_aliases = dict(
     ident = 'Session.session',
     user = 'Session.username',
     keyfile = 'Session.keyfile',
 )
 
 session_flags  = {
     'secure' : ({'Session' : { 'key' : str_to_bytes(str(uuid.uuid4())),
                             'keyfile' : '' }},
         """Use HMAC digests for authentication of messages.
         Setting this flag will generate a new UUID to use as the HMAC key.
         """),
     'no-secure' : ({'Session' : { 'key' : b'', 'keyfile' : '' }},
         """Don't authenticate messages."""),
 }
 
 def default_secure(cfg):
     """Set the default behavior for a config environment to be secure.
     
     If Session.key/keyfile have not been set, set Session.key to
     a new random UUID.
     """
     
     if 'Session' in cfg:
         if 'key' in cfg.Session or 'keyfile' in cfg.Session:
             return
     # key/keyfile not specified, generate new UUID:
     cfg.Session.key = str_to_bytes(str(uuid.uuid4()))
 
 
 #-----------------------------------------------------------------------------
 # Classes
 #-----------------------------------------------------------------------------
 
 class SessionFactory(LoggingConfigurable):
     """The Base class for configurables that have a Session, Context, logger,
     and IOLoop.
     """
 
     logname = Unicode('')
     def _logname_changed(self, name, old, new):
         self.log = logging.getLogger(new)
 
     # not configurable:
     context = Instance('zmq.Context')
     def _context_default(self):
         return zmq.Context.instance()
 
     session = Instance('IPython.kernel.zmq.session.Session')
 
     loop = Instance('zmq.eventloop.ioloop.IOLoop', allow_none=False)
     def _loop_default(self):
         return IOLoop.instance()
 
     def __init__(self, **kwargs):
         super(SessionFactory, self).__init__(**kwargs)
 
         if self.session is None:
             # construct the session
             self.session = Session(**kwargs)
 
 
 class Message(object):
     """A simple message object that maps dict keys to attributes.
 
     A Message can be created from a dict and a dict from a Message instance
     simply by calling dict(msg_obj)."""
 
     def __init__(self, msg_dict):
         dct = self.__dict__
         for k, v in iteritems(dict(msg_dict)):
             if isinstance(v, dict):
                 v = Message(v)
             dct[k] = v
 
     # Having this iterator lets dict(msg_obj) work out of the box.
     def __iter__(self):
         return iter(iteritems(self.__dict__))
 
     def __repr__(self):
         return repr(self.__dict__)
 
     def __str__(self):
         return pprint.pformat(self.__dict__)
 
     def __contains__(self, k):
         return k in self.__dict__
 
     def __getitem__(self, k):
         return self.__dict__[k]
 
 
 def msg_header(msg_id, msg_type, username, session):
     date = datetime.now()
     return locals()
 
 def extract_header(msg_or_header):
     """Given a message or header, return the header."""
     if not msg_or_header:
         return {}
     try:
         # See if msg_or_header is the entire message.
         h = msg_or_header['header']
     except KeyError:
         try:
             # See if msg_or_header is just the header
             h = msg_or_header['msg_id']
         except KeyError:
             raise
         else:
             h = msg_or_header
     if not isinstance(h, dict):
         h = dict(h)
     return h
 
 class Session(Configurable):
     """Object for handling serialization and sending of messages.
 
     The Session object handles building messages and sending them
     with ZMQ sockets or ZMQStream objects.  Objects can communicate with each
     other over the network via Session objects, and only need to work with the
     dict-based IPython message spec. The Session will handle
     serialization/deserialization, security, and metadata.
 
     Sessions support configurable serialiization via packer/unpacker traits,
     and signing with HMAC digests via the key/keyfile traits.
 
     Parameters
     ----------
 
     debug : bool
         whether to trigger extra debugging statements
     packer/unpacker : str : 'json', 'pickle' or import_string
         importstrings for methods to serialize message parts.  If just
         'json' or 'pickle', predefined JSON and pickle packers will be used.
         Otherwise, the entire importstring must be used.
 
         The functions must accept at least valid JSON input, and output *bytes*.
 
         For example, to use msgpack:
         packer = 'msgpack.packb', unpacker='msgpack.unpackb'
     pack/unpack : callables
         You can also set the pack/unpack callables for serialization directly.
     session : bytes
         the ID of this Session object.  The default is to generate a new UUID.
     username : unicode
         username added to message headers.  The default is to ask the OS.
     key : bytes
         The key used to initialize an HMAC signature.  If unset, messages
         will not be signed or checked.
     keyfile : filepath
         The file containing a key.  If this is set, `key` will be initialized
         to the contents of the file.
 
     """
 
     debug=Bool(False, config=True, help="""Debug output in the Session""")
 
     packer = DottedObjectName('json',config=True,
             help="""The name of the packer for serializing messages.
             Should be one of 'json', 'pickle', or an import name
             for a custom callable serializer.""")
     def _packer_changed(self, name, old, new):
         if new.lower() == 'json':
             self.pack = json_packer
             self.unpack = json_unpacker
             self.unpacker = new
         elif new.lower() == 'pickle':
             self.pack = pickle_packer
             self.unpack = pickle_unpacker
             self.unpacker = new
         else:
             self.pack = import_item(str(new))
 
     unpacker = DottedObjectName('json', config=True,
         help="""The name of the unpacker for unserializing messages.
         Only used with custom functions for `packer`.""")
     def _unpacker_changed(self, name, old, new):
         if new.lower() == 'json':
             self.pack = json_packer
             self.unpack = json_unpacker
             self.packer = new
         elif new.lower() == 'pickle':
             self.pack = pickle_packer
             self.unpack = pickle_unpacker
             self.packer = new
         else:
             self.unpack = import_item(str(new))
 
     session = CUnicode(u'', config=True,
         help="""The UUID identifying this session.""")
     def _session_default(self):
         u = unicode_type(uuid.uuid4())
         self.bsession = u.encode('ascii')
         return u
 
     def _session_changed(self, name, old, new):
         self.bsession = self.session.encode('ascii')
 
     # bsession is the session as bytes
     bsession = CBytes(b'')
 
     username = Unicode(str_to_unicode(os.environ.get('USER', 'username')),
         help="""Username for the Session. Default is your system username.""",
         config=True)
 
     metadata = Dict({}, config=True,
         help="""Metadata dictionary, which serves as the default top-level metadata dict for each message.""")
 
     # message signature related traits:
     
     key = CBytes(b'', config=True,
         help="""execution key, for extra authentication.""")
     def _key_changed(self, name, old, new):
         if new:
             self.auth = hmac.HMAC(new, digestmod=self.digest_mod)
         else:
             self.auth = None
     
     signature_scheme = Unicode('hmac-sha256', config=True,
         help="""The digest scheme used to construct the message signatures.
         Must have the form 'hmac-HASH'.""")
     def _signature_scheme_changed(self, name, old, new):
         if not new.startswith('hmac-'):
             raise TraitError("signature_scheme must start with 'hmac-', got %r" % new)
         hash_name = new.split('-', 1)[1]
         try:
             self.digest_mod = getattr(hashlib, hash_name)
         except AttributeError:
             raise TraitError("hashlib has no such attribute: %s" % hash_name)
     
     digest_mod = Any()
     def _digest_mod_default(self):
         return hashlib.sha256
     
     auth = Instance(hmac.HMAC)
     
     digest_history = Set()
     digest_history_size = Integer(2**16, config=True,
         help="""The maximum number of digests to remember.
         
         The digest history will be culled when it exceeds this value.
         """
     )
 
     keyfile = Unicode('', config=True,
         help="""path to file containing execution key.""")
     def _keyfile_changed(self, name, old, new):
         with open(new, 'rb') as f:
             self.key = f.read().strip()
 
     # for protecting against sends from forks
     pid = Integer()
     
     # serialization traits:
     
     pack = Any(default_packer) # the actual packer function
     def _pack_changed(self, name, old, new):
         if not callable(new):
             raise TypeError("packer must be callable, not %s"%type(new))
 
     unpack = Any(default_unpacker) # the actual packer function
     def _unpack_changed(self, name, old, new):
         # unpacker is not checked - it is assumed to be
         if not callable(new):
             raise TypeError("unpacker must be callable, not %s"%type(new))
     
     # thresholds:
     copy_threshold = Integer(2**16, config=True,
         help="Threshold (in bytes) beyond which a buffer should be sent without copying.")
     buffer_threshold = Integer(MAX_BYTES, config=True,
         help="Threshold (in bytes) beyond which an object's buffer should be extracted to avoid pickling.")
     item_threshold = Integer(MAX_ITEMS, config=True,
         help="""The maximum number of items for a container to be introspected for custom serialization.
         Containers larger than this are pickled outright.
         """
     )
 
     
     def __init__(self, **kwargs):
         """create a Session object
 
         Parameters
         ----------
 
         debug : bool
             whether to trigger extra debugging statements
         packer/unpacker : str : 'json', 'pickle' or import_string
             importstrings for methods to serialize message parts.  If just
             'json' or 'pickle', predefined JSON and pickle packers will be used.
             Otherwise, the entire importstring must be used.
 
             The functions must accept at least valid JSON input, and output
             *bytes*.
 
             For example, to use msgpack:
             packer = 'msgpack.packb', unpacker='msgpack.unpackb'
         pack/unpack : callables
             You can also set the pack/unpack callables for serialization
             directly.
         session : unicode (must be ascii)
             the ID of this Session object.  The default is to generate a new
             UUID.
         bsession : bytes
             The session as bytes
         username : unicode
             username added to message headers.  The default is to ask the OS.
         key : bytes
             The key used to initialize an HMAC signature.  If unset, messages
             will not be signed or checked.
         signature_scheme : str
             The message digest scheme. Currently must be of the form 'hmac-HASH',
             where 'HASH' is a hashing function available in Python's hashlib.
             The default is 'hmac-sha256'.
             This is ignored if 'key' is empty.
         keyfile : filepath
             The file containing a key.  If this is set, `key` will be
             initialized to the contents of the file.
         """
         super(Session, self).__init__(**kwargs)
         self._check_packers()
         self.none = self.pack({})
         # ensure self._session_default() if necessary, so bsession is defined:
         self.session
         self.pid = os.getpid()
 
     @property
     def msg_id(self):
         """always return new uuid"""
         return str(uuid.uuid4())
 
     def _check_packers(self):
         """check packers for datetime support."""
         pack = self.pack
         unpack = self.unpack
 
         # check simple serialization
         msg = dict(a=[1,'hi'])
         try:
             packed = pack(msg)
         except Exception as e:
             msg = "packer '{packer}' could not serialize a simple message: {e}{jsonmsg}"
             if self.packer == 'json':
                 jsonmsg = "\nzmq.utils.jsonapi.jsonmod = %s" % jsonapi.jsonmod
             else:
                 jsonmsg = ""
             raise ValueError(
                 msg.format(packer=self.packer, e=e, jsonmsg=jsonmsg)
             )
 
         # ensure packed message is bytes
         if not isinstance(packed, bytes):
             raise ValueError("message packed to %r, but bytes are required"%type(packed))
 
         # check that unpack is pack's inverse
         try:
             unpacked = unpack(packed)
             assert unpacked == msg
         except Exception as e:
             msg = "unpacker '{unpacker}' could not handle output from packer '{packer}': {e}{jsonmsg}"
             if self.packer == 'json':
                 jsonmsg = "\nzmq.utils.jsonapi.jsonmod = %s" % jsonapi.jsonmod
             else:
                 jsonmsg = ""
             raise ValueError(
                 msg.format(packer=self.packer, unpacker=self.unpacker, e=e, jsonmsg=jsonmsg)
             )
 
         # check datetime support
         msg = dict(t=datetime.now())
         try:
             unpacked = unpack(pack(msg))
             if isinstance(unpacked['t'], datetime):
                 raise ValueError("Shouldn't deserialize to datetime")
         except Exception:
             self.pack = lambda o: pack(squash_dates(o))
             self.unpack = lambda s: unpack(s)
 
     def msg_header(self, msg_type):
         return msg_header(self.msg_id, msg_type, self.username, self.session)
 
     def msg(self, msg_type, content=None, parent=None, header=None, metadata=None):
         """Return the nested message dict.
 
         This format is different from what is sent over the wire. The
         serialize/unserialize methods converts this nested message dict to the wire
         format, which is a list of message parts.
         """
         msg = {}
         header = self.msg_header(msg_type) if header is None else header
         msg['header'] = header
         msg['msg_id'] = header['msg_id']
         msg['msg_type'] = header['msg_type']
         msg['parent_header'] = {} if parent is None else extract_header(parent)
         msg['content'] = {} if content is None else content
         msg['metadata'] = self.metadata.copy()
         if metadata is not None:
             msg['metadata'].update(metadata)
         return msg
 
     def sign(self, msg_list):
         """Sign a message with HMAC digest. If no auth, return b''.
 
         Parameters
         ----------
         msg_list : list
             The [p_header,p_parent,p_content] part of the message list.
         """
         if self.auth is None:
             return b''
         h = self.auth.copy()
         for m in msg_list:
             h.update(m)
         return str_to_bytes(h.hexdigest())
 
     def serialize(self, msg, ident=None):
         """Serialize the message components to bytes.
 
         This is roughly the inverse of unserialize. The serialize/unserialize
         methods work with full message lists, whereas pack/unpack work with
         the individual message parts in the message list.
 
         Parameters
         ----------
         msg : dict or Message
             The nexted message dict as returned by the self.msg method.
 
         Returns
         -------
         msg_list : list
-            The list of bytes objects to be sent with the format:
-            [ident1,ident2,...,DELIM,HMAC,p_header,p_parent,p_metadata,p_content,
-             buffer1,buffer2,...]. In this list, the p_* entities are
-            the packed or serialized versions, so if JSON is used, these
-            are utf8 encoded JSON strings.
+            The list of bytes objects to be sent with the format::
+
+                [ident1, ident2, ..., DELIM, HMAC, p_header, p_parent,
+                 p_metadata, p_content, buffer1, buffer2, ...]
+
+            In this list, the ``p_*`` entities are the packed or serialized
+            versions, so if JSON is used, these are utf8 encoded JSON strings.
         """
         content = msg.get('content', {})
         if content is None:
             content = self.none
         elif isinstance(content, dict):
             content = self.pack(content)
         elif isinstance(content, bytes):
             # content is already packed, as in a relayed message
             pass
         elif isinstance(content, unicode_type):
             # should be bytes, but JSON often spits out unicode
             content = content.encode('utf8')
         else:
             raise TypeError("Content incorrect type: %s"%type(content))
 
         real_message = [self.pack(msg['header']),
                         self.pack(msg['parent_header']),
                         self.pack(msg['metadata']),
                         content,
         ]
 
         to_send = []
 
         if isinstance(ident, list):
             # accept list of idents
             to_send.extend(ident)
         elif ident is not None:
             to_send.append(ident)
         to_send.append(DELIM)
 
         signature = self.sign(real_message)
         to_send.append(signature)
 
         to_send.extend(real_message)
 
         return to_send
 
     def send(self, stream, msg_or_type, content=None, parent=None, ident=None,
              buffers=None, track=False, header=None, metadata=None):
         """Build and send a message via stream or socket.
 
         The message format used by this function internally is as follows:
 
         [ident1,ident2,...,DELIM,HMAC,p_header,p_parent,p_content,
          buffer1,buffer2,...]
 
         The serialize/unserialize methods convert the nested message dict into this
         format.
 
         Parameters
         ----------
 
         stream : zmq.Socket or ZMQStream
             The socket-like object used to send the data.
         msg_or_type : str or Message/dict
             Normally, msg_or_type will be a msg_type unless a message is being
             sent more than once. If a header is supplied, this can be set to
             None and the msg_type will be pulled from the header.
 
         content : dict or None
             The content of the message (ignored if msg_or_type is a message).
         header : dict or None
             The header dict for the message (ignored if msg_to_type is a message).
         parent : Message or dict or None
             The parent or parent header describing the parent of this message
             (ignored if msg_or_type is a message).
         ident : bytes or list of bytes
             The zmq.IDENTITY routing path.
         metadata : dict or None
             The metadata describing the message
         buffers : list or None
             The already-serialized buffers to be appended to the message.
         track : bool
             Whether to track.  Only for use with Sockets, because ZMQStream
             objects cannot track messages.
             
 
         Returns
         -------
         msg : dict
             The constructed message.
         """
         if not isinstance(stream, zmq.Socket):
             # ZMQStreams and dummy sockets do not support tracking.
             track = False
 
         if isinstance(msg_or_type, (Message, dict)):
             # We got a Message or message dict, not a msg_type so don't
             # build a new Message.
             msg = msg_or_type
         else:
             msg = self.msg(msg_or_type, content=content, parent=parent,
                            header=header, metadata=metadata)
         if not os.getpid() == self.pid:
             io.rprint("WARNING: attempted to send message from fork")
             io.rprint(msg)
             return
         buffers = [] if buffers is None else buffers
         to_send = self.serialize(msg, ident)
         to_send.extend(buffers)
         longest = max([ len(s) for s in to_send ])
         copy = (longest < self.copy_threshold)
         
         if buffers and track and not copy:
             # only really track when we are doing zero-copy buffers
             tracker = stream.send_multipart(to_send, copy=False, track=True)
         else:
             # use dummy tracker, which will be done immediately
             tracker = DONE
             stream.send_multipart(to_send, copy=copy)
 
         if self.debug:
             pprint.pprint(msg)
             pprint.pprint(to_send)
             pprint.pprint(buffers)
 
         msg['tracker'] = tracker
 
         return msg
 
     def send_raw(self, stream, msg_list, flags=0, copy=True, ident=None):
         """Send a raw message via ident path.
 
         This method is used to send a already serialized message.
 
         Parameters
         ----------
         stream : ZMQStream or Socket
             The ZMQ stream or socket to use for sending the message.
         msg_list : list
             The serialized list of messages to send. This only includes the
             [p_header,p_parent,p_metadata,p_content,buffer1,buffer2,...] portion of
             the message.
         ident : ident or list
             A single ident or a list of idents to use in sending.
         """
         to_send = []
         if isinstance(ident, bytes):
             ident = [ident]
         if ident is not None:
             to_send.extend(ident)
 
         to_send.append(DELIM)
         to_send.append(self.sign(msg_list))
         to_send.extend(msg_list)
         stream.send_multipart(msg_list, flags, copy=copy)
 
     def recv(self, socket, mode=zmq.NOBLOCK, content=True, copy=True):
         """Receive and unpack a message.
 
         Parameters
         ----------
         socket : ZMQStream or Socket
             The socket or stream to use in receiving.
 
         Returns
         -------
         [idents], msg
             [idents] is a list of idents and msg is a nested message dict of
             same format as self.msg returns.
         """
         if isinstance(socket, ZMQStream):
             socket = socket.socket
         try:
             msg_list = socket.recv_multipart(mode, copy=copy)
         except zmq.ZMQError as e:
             if e.errno == zmq.EAGAIN:
                 # We can convert EAGAIN to None as we know in this case
                 # recv_multipart won't return None.
                 return None,None
             else:
                 raise
         # split multipart message into identity list and message dict
         # invalid large messages can cause very expensive string comparisons
         idents, msg_list = self.feed_identities(msg_list, copy)
         try:
             return idents, self.unserialize(msg_list, content=content, copy=copy)
         except Exception as e:
             # TODO: handle it
             raise e
 
     def feed_identities(self, msg_list, copy=True):
         """Split the identities from the rest of the message.
 
         Feed until DELIM is reached, then return the prefix as idents and
         remainder as msg_list. This is easily broken by setting an IDENT to DELIM,
         but that would be silly.
 
         Parameters
         ----------
         msg_list : a list of Message or bytes objects
             The message to be split.
         copy : bool
             flag determining whether the arguments are bytes or Messages
 
         Returns
         -------
         (idents, msg_list) : two lists
             idents will always be a list of bytes, each of which is a ZMQ
             identity. msg_list will be a list of bytes or zmq.Messages of the
             form [HMAC,p_header,p_parent,p_content,buffer1,buffer2,...] and
             should be unpackable/unserializable via self.unserialize at this
             point.
         """
         if copy:
             idx = msg_list.index(DELIM)
             return msg_list[:idx], msg_list[idx+1:]
         else:
             failed = True
             for idx,m in enumerate(msg_list):
                 if m.bytes == DELIM:
                     failed = False
                     break
             if failed:
                 raise ValueError("DELIM not in msg_list")
             idents, msg_list = msg_list[:idx], msg_list[idx+1:]
             return [m.bytes for m in idents], msg_list
 
     def _add_digest(self, signature):
         """add a digest to history to protect against replay attacks"""
         if self.digest_history_size == 0:
             # no history, never add digests
             return
         
         self.digest_history.add(signature)
         if len(self.digest_history) > self.digest_history_size:
             # threshold reached, cull 10%
             self._cull_digest_history()
     
     def _cull_digest_history(self):
         """cull the digest history
         
         Removes a randomly selected 10% of the digest history
         """
         current = len(self.digest_history)
         n_to_cull = max(int(current // 10), current - self.digest_history_size)
         if n_to_cull >= current:
             self.digest_history = set()
             return
         to_cull = random.sample(self.digest_history, n_to_cull)
         self.digest_history.difference_update(to_cull)
     
     def unserialize(self, msg_list, content=True, copy=True):
         """Unserialize a msg_list to a nested message dict.
 
         This is roughly the inverse of serialize. The serialize/unserialize
         methods work with full message lists, whereas pack/unpack work with
         the individual message parts in the message list.
 
-        Parameters:
-        -----------
+        Parameters
+        ----------
         msg_list : list of bytes or Message objects
             The list of message parts of the form [HMAC,p_header,p_parent,
             p_metadata,p_content,buffer1,buffer2,...].
         content : bool (True)
             Whether to unpack the content dict (True), or leave it packed
             (False).
         copy : bool (True)
             Whether to return the bytes (True), or the non-copying Message
             object in each place (False).
 
         Returns
         -------
         msg : dict
             The nested message dict with top-level keys [header, parent_header,
             content, buffers].
         """
         minlen = 5
         message = {}
         if not copy:
             for i in range(minlen):
                 msg_list[i] = msg_list[i].bytes
         if self.auth is not None:
             signature = msg_list[0]
             if not signature:
                 raise ValueError("Unsigned Message")
             if signature in self.digest_history:
                 raise ValueError("Duplicate Signature: %r" % signature)
             self._add_digest(signature)
             check = self.sign(msg_list[1:5])
             if not signature == check:
                 raise ValueError("Invalid Signature: %r" % signature)
         if not len(msg_list) >= minlen:
             raise TypeError("malformed message, must have at least %i elements"%minlen)
         header = self.unpack(msg_list[1])
         message['header'] = extract_dates(header)
         message['msg_id'] = header['msg_id']
         message['msg_type'] = header['msg_type']
         message['parent_header'] = extract_dates(self.unpack(msg_list[2]))
         message['metadata'] = self.unpack(msg_list[3])
         if content:
             message['content'] = self.unpack(msg_list[4])
         else:
             message['content'] = msg_list[4]
 
         message['buffers'] = msg_list[5:]
         return message
 
 def test_msg2obj():
     am = dict(x=1)
     ao = Message(am)
     assert ao.x == am['x']
 
     am['y'] = dict(z=1)
     ao = Message(am)
     assert ao.y.z == am['y']['z']
 
     k1, k2 = 'y', 'z'
     assert ao[k1][k2] == am[k1][k2]
 
     am2 = dict(ao)
     assert am['x'] == am2['x']
     assert am['y']['z'] == am2['y']['z']
 

IPython/kernel/zmq/zmqshell.py

@@ -1,624 +1,572 b''
 """A ZMQ-based subclass of InteractiveShell.
 
 This code is meant to ease the refactoring of the base InteractiveShell into
 something with a cleaner architecture for 2-process use, without actually
 breaking InteractiveShell itself.  So we're doing something a bit ugly, where
 we subclass and override what we want to fix.  Once this is working well, we
 can go back to the base class and refactor the code for a cleaner inheritance
 implementation that doesn't rely on so much monkeypatching.
 
 But this lets us maintain a fully working IPython as we develop the new
 machinery.  This should thus be thought of as scaffolding.
 """
 #-----------------------------------------------------------------------------
 # Imports
 #-----------------------------------------------------------------------------
 from __future__ import print_function
 
 # Stdlib
 import os
 import sys
 import time
 
 # System library imports
 from zmq.eventloop import ioloop
 
 # Our own
 from IPython.core.interactiveshell import (
     InteractiveShell, InteractiveShellABC
 )
 from IPython.core import page
 from IPython.core.autocall import ZMQExitAutocall
 from IPython.core.displaypub import DisplayPublisher
 from IPython.core.error import UsageError
 from IPython.core.magics import MacroToEdit, CodeMagics
 from IPython.core.magic import magics_class, line_magic, Magics
 from IPython.core.payloadpage import install_payload_page
 from IPython.display import display, Javascript
 from IPython.kernel.inprocess.socket import SocketABC
 from IPython.kernel import (
     get_connection_file, get_connection_info, connect_qtconsole
 )
 from IPython.testing.skipdoctest import skip_doctest
 from IPython.utils import openpy
 from IPython.utils.jsonutil import json_clean, encode_images
 from IPython.utils.process import arg_split
 from IPython.utils import py3compat
 from IPython.utils.py3compat import unicode_type
 from IPython.utils.traitlets import Instance, Type, Dict, CBool, CBytes, Any
 from IPython.utils.warn import error
 from IPython.kernel.zmq.displayhook import ZMQShellDisplayHook
 from IPython.kernel.zmq.datapub import ZMQDataPublisher
 from IPython.kernel.zmq.session import extract_header
 from IPython.kernel.comm import CommManager
 from .session import Session
 
 #-----------------------------------------------------------------------------
 # Functions and classes
 #-----------------------------------------------------------------------------
 
 class ZMQDisplayPublisher(DisplayPublisher):
     """A display publisher that publishes data using a ZeroMQ PUB socket."""
 
     session = Instance(Session)
     pub_socket = Instance(SocketABC)
     parent_header = Dict({})
     topic = CBytes(b'display_data')
 
     def set_parent(self, parent):
         """Set the parent for outbound messages."""
         self.parent_header = extract_header(parent)
     
     def _flush_streams(self):
         """flush IO Streams prior to display"""
         sys.stdout.flush()
         sys.stderr.flush()
 
     def publish(self, source, data, metadata=None):
         self._flush_streams()
         if metadata is None:
             metadata = {}
         self._validate_data(source, data, metadata)
         content = {}
         content['source'] = source
         content['data'] = encode_images(data)
         content['metadata'] = metadata
         self.session.send(
             self.pub_socket, u'display_data', json_clean(content),
             parent=self.parent_header, ident=self.topic,
         )
 
     def clear_output(self, wait=False):
         content = dict(wait=wait)
 
         print('\r', file=sys.stdout, end='')
         print('\r', file=sys.stderr, end='')
         self._flush_streams()
         
         self.session.send(
             self.pub_socket, u'clear_output', content,
             parent=self.parent_header, ident=self.topic,
         )
 
 @magics_class
 class KernelMagics(Magics):
     #------------------------------------------------------------------------
     # Magic overrides
     #------------------------------------------------------------------------
     # Once the base class stops inheriting from magic, this code needs to be
     # moved into a separate machinery as well.  For now, at least isolate here
     # the magics which this class needs to implement differently from the base
     # class, or that are unique to it.
 
     @line_magic
     def doctest_mode(self, parameter_s=''):
         """Toggle doctest mode on and off.
 
         This mode is intended to make IPython behave as much as possible like a
         plain Python shell, from the perspective of how its prompts, exceptions
         and output look.  This makes it easy to copy and paste parts of a
         session into doctests.  It does so by:
 
         - Changing the prompts to the classic ``>>>`` ones.
         - Changing the exception reporting mode to 'Plain'.
         - Disabling pretty-printing of output.
 
         Note that IPython also supports the pasting of code snippets that have
         leading '>>>' and '...' prompts in them.  This means that you can paste
         doctests from files or docstrings (even if they have leading
         whitespace), and the code will execute correctly.  You can then use
         '%history -t' to see the translated history; this will give you the
         input after removal of all the leading prompts and whitespace, which
         can be pasted back into an editor.
 
         With these features, you can switch into this mode easily whenever you
         need to do testing and changes to doctests, without having to leave
         your existing IPython session.
         """
 
         from IPython.utils.ipstruct import Struct
 
         # Shorthands
         shell = self.shell
         disp_formatter = self.shell.display_formatter
         ptformatter = disp_formatter.formatters['text/plain']
         # dstore is a data store kept in the instance metadata bag to track any
         # changes we make, so we can undo them later.
         dstore = shell.meta.setdefault('doctest_mode', Struct())
         save_dstore = dstore.setdefault
 
         # save a few values we'll need to recover later
         mode = save_dstore('mode', False)
         save_dstore('rc_pprint', ptformatter.pprint)
         save_dstore('rc_active_types',disp_formatter.active_types)
         save_dstore('xmode', shell.InteractiveTB.mode)
 
         if mode == False:
             # turn on
             ptformatter.pprint = False
             disp_formatter.active_types = ['text/plain']
             shell.magic('xmode Plain')
         else:
             # turn off
             ptformatter.pprint = dstore.rc_pprint
             disp_formatter.active_types = dstore.rc_active_types
             shell.magic("xmode " + dstore.xmode)
 
         # Store new mode and inform on console
         dstore.mode = bool(1-int(mode))
         mode_label = ['OFF','ON'][dstore.mode]
         print('Doctest mode is:', mode_label)
 
         # Send the payload back so that clients can modify their prompt display
         payload = dict(
             source='doctest_mode',
             mode=dstore.mode)
         shell.payload_manager.write_payload(payload)
         
     
     _find_edit_target = CodeMagics._find_edit_target
 
     @skip_doctest
     @line_magic
     def edit(self, parameter_s='', last_call=['','']):
         """Bring up an editor and execute the resulting code.
 
         Usage:
           %edit [options] [args]
 
         %edit runs an external text editor. You will need to set the command for
         this editor via the ``TerminalInteractiveShell.editor`` option in your
         configuration file before it will work.
 
         This command allows you to conveniently edit multi-line code right in
         your IPython session.
 
         If called without arguments, %edit opens up an empty editor with a
         temporary file and will execute the contents of this file when you
         close it (don't forget to save it!).
 
-
         Options:
 
-        -n <number>: open the editor at a specified line number.  By default,
-        the IPython editor hook uses the unix syntax 'editor +N filename', but
-        you can configure this by providing your own modified hook if your
-        favorite editor supports line-number specifications with a different
-        syntax.
-
-        -p: this will call the editor with the same data as the previous time
-        it was used, regardless of how long ago (in your current session) it
-        was.
-
-        -r: use 'raw' input.  This option only applies to input taken from the
-        user's history.  By default, the 'processed' history is used, so that
-        magics are loaded in their transformed version to valid Python.  If
-        this option is given, the raw input as typed as the command line is
-        used instead.  When you exit the editor, it will be executed by
-        IPython's own processor.
+        -n <number>
+          Open the editor at a specified line number. By default, the IPython
+          editor hook uses the unix syntax 'editor +N filename', but you can
+          configure this by providing your own modified hook if your favorite
+          editor supports line-number specifications with a different syntax.
 
-        -x: do not execute the edited code immediately upon exit. This is
-        mainly useful if you are editing programs which need to be called with
-        command line arguments, which you can then do using %run.
+        -p
+          Call the editor with the same data as the previous time it was used,
+          regardless of how long ago (in your current session) it was.
 
+        -r
+          Use 'raw' input. This option only applies to input taken from the
+          user's history.  By default, the 'processed' history is used, so that
+          magics are loaded in their transformed version to valid Python.  If
+          this option is given, the raw input as typed as the command line is
+          used instead.  When you exit the editor, it will be executed by
+          IPython's own processor.
 
         Arguments:
 
         If arguments are given, the following possibilites exist:
 
         - The arguments are numbers or pairs of colon-separated numbers (like
-        1 4:8 9). These are interpreted as lines of previous input to be
-        loaded into the editor. The syntax is the same of the %macro command.
+          1 4:8 9). These are interpreted as lines of previous input to be
+          loaded into the editor. The syntax is the same of the %macro command.
 
         - If the argument doesn't start with a number, it is evaluated as a
-        variable and its contents loaded into the editor. You can thus edit
-        any string which contains python code (including the result of
-        previous edits).
+          variable and its contents loaded into the editor. You can thus edit
+          any string which contains python code (including the result of
+          previous edits).
 
         - If the argument is the name of an object (other than a string),
-        IPython will try to locate the file where it was defined and open the
-        editor at the point where it is defined. You can use `%edit function`
-        to load an editor exactly at the point where 'function' is defined,
-        edit it and have the file be executed automatically.
+          IPython will try to locate the file where it was defined and open the
+          editor at the point where it is defined. You can use ``%edit function``
+          to load an editor exactly at the point where 'function' is defined,
+          edit it and have the file be executed automatically.
 
-        If the object is a macro (see %macro for details), this opens up your
-        specified editor with a temporary file containing the macro's data.
-        Upon exit, the macro is reloaded with the contents of the file.
+          If the object is a macro (see %macro for details), this opens up your
+          specified editor with a temporary file containing the macro's data.
+          Upon exit, the macro is reloaded with the contents of the file.
 
-        Note: opening at an exact line is only supported under Unix, and some
-        editors (like kedit and gedit up to Gnome 2.8) do not understand the
-        '+NUMBER' parameter necessary for this feature. Good editors like
-        (X)Emacs, vi, jed, pico and joe all do.
+          Note: opening at an exact line is only supported under Unix, and some
+          editors (like kedit and gedit up to Gnome 2.8) do not understand the
+          '+NUMBER' parameter necessary for this feature. Good editors like
+          (X)Emacs, vi, jed, pico and joe all do.
 
         - If the argument is not found as a variable, IPython will look for a
-        file with that name (adding .py if necessary) and load it into the
-        editor. It will execute its contents with execfile() when you exit,
-        loading any code in the file into your interactive namespace.
+          file with that name (adding .py if necessary) and load it into the
+          editor. It will execute its contents with execfile() when you exit,
+          loading any code in the file into your interactive namespace.
 
-        After executing your code, %edit will return as output the code you
-        typed in the editor (except when it was an existing file). This way
-        you can reload the code in further invocations of %edit as a variable,
-        via _<NUMBER> or Out[<NUMBER>], where <NUMBER> is the prompt number of
-        the output.
+        Unlike in the terminal, this is designed to use a GUI editor, and we do
+        not know when it has closed. So the file you edit will not be
+        automatically executed or printed.
 
         Note that %edit is also available through the alias %ed.
-
-        This is an example of creating a simple function inside the editor and
-        then modifying it. First, start up the editor:
-
-        In [1]: ed
-        Editing... done. Executing edited code...
-        Out[1]: 'def foo():n    print "foo() was defined in an editing session"n'
-
-        We can then call the function foo():
-
-        In [2]: foo()
-        foo() was defined in an editing session
-
-        Now we edit foo.  IPython automatically loads the editor with the
-        (temporary) file where foo() was previously defined:
-
-        In [3]: ed foo
-        Editing... done. Executing edited code...
-
-        And if we call foo() again we get the modified version:
-
-        In [4]: foo()
-        foo() has now been changed!
-
-        Here is an example of how to edit a code snippet successive
-        times. First we call the editor:
-
-        In [5]: ed
-        Editing... done. Executing edited code...
-        hello
-        Out[5]: "print 'hello'n"
-
-        Now we call it again with the previous output (stored in _):
-
-        In [6]: ed _
-        Editing... done. Executing edited code...
-        hello world
-        Out[6]: "print 'hello world'n"
-
-        Now we call it with the output #8 (stored in _8, also as Out[8]):
-
-        In [7]: ed _8
-        Editing... done. Executing edited code...
-        hello again
-        Out[7]: "print 'hello again'n"
         """
 
         opts,args = self.parse_options(parameter_s,'prn:')
 
         try:
             filename, lineno, _ = CodeMagics._find_edit_target(self.shell, args, opts, last_call)
         except MacroToEdit as e:
             # TODO: Implement macro editing over 2 processes.
             print("Macro editing not yet implemented in 2-process model.")
             return
 
         # Make sure we send to the client an absolute path, in case the working
         # directory of client and kernel don't match
         filename = os.path.abspath(filename)
 
         payload = {
             'source' : 'edit_magic',
             'filename' : filename,
             'line_number' : lineno
         }
         self.shell.payload_manager.write_payload(payload)
 
     # A few magics that are adapted to the specifics of using pexpect and a
     # remote terminal
 
     @line_magic
     def clear(self, arg_s):
         """Clear the terminal."""
         if os.name == 'posix':
             self.shell.system("clear")
         else:
             self.shell.system("cls")
 
     if os.name == 'nt':
         # This is the usual name in windows
         cls = line_magic('cls')(clear)
 
     # Terminal pagers won't work over pexpect, but we do have our own pager
 
     @line_magic
     def less(self, arg_s):
         """Show a file through the pager.
 
         Files ending in .py are syntax-highlighted."""
         if not arg_s:
             raise UsageError('Missing filename.')
 
         cont = open(arg_s).read()
         if arg_s.endswith('.py'):
             cont = self.shell.pycolorize(openpy.read_py_file(arg_s, skip_encoding_cookie=False))
         else:
             cont = open(arg_s).read()
         page.page(cont)
 
     more = line_magic('more')(less)
 
     # Man calls a pager, so we also need to redefine it
     if os.name == 'posix':
         @line_magic
         def man(self, arg_s):
             """Find the man page for the given command and display in pager."""
             page.page(self.shell.getoutput('man %s | col -b' % arg_s,
                                            split=False))
 
     @line_magic
     def connect_info(self, arg_s):
         """Print information for connecting other clients to this kernel
         
         It will print the contents of this session's connection file, as well as
         shortcuts for local clients.
         
         In the simplest case, when called from the most recently launched kernel,
         secondary clients can be connected, simply with:
         
         $> ipython <app> --existing
         
         """
         
         from IPython.core.application import BaseIPythonApplication as BaseIPApp
         
         if BaseIPApp.initialized():
             app = BaseIPApp.instance()
             security_dir = app.profile_dir.security_dir
             profile = app.profile
         else:
             profile = 'default'
             security_dir = ''
         
         try:
             connection_file = get_connection_file()
             info = get_connection_info(unpack=False)
         except Exception as e:
             error("Could not get connection info: %r" % e)
             return
         
         # add profile flag for non-default profile
         profile_flag = "--profile %s" % profile if profile != 'default' else ""
         
         # if it's in the security dir, truncate to basename
         if security_dir == os.path.dirname(connection_file):
             connection_file = os.path.basename(connection_file)
         
         
         print (info + '\n')
         print ("Paste the above JSON into a file, and connect with:\n"
             "    $> ipython <app> --existing <file>\n"
             "or, if you are local, you can connect with just:\n"
             "    $> ipython <app> --existing {0} {1}\n"
             "or even just:\n"
             "    $> ipython <app> --existing {1}\n"
             "if this is the most recent IPython session you have started.".format(
             connection_file, profile_flag
             )
         )
 
     @line_magic
     def qtconsole(self, arg_s):
         """Open a qtconsole connected to this kernel.
         
         Useful for connecting a qtconsole to running notebooks, for better
         debugging.
         """
         
         # %qtconsole should imply bind_kernel for engines:
         try:
             from IPython.parallel import bind_kernel
         except ImportError:
             # technically possible, because parallel has higher pyzmq min-version
             pass
         else:
             bind_kernel()
         
         try:
             p = connect_qtconsole(argv=arg_split(arg_s, os.name=='posix'))
         except Exception as e:
             error("Could not start qtconsole: %r" % e)
             return
     
     @line_magic
     def autosave(self, arg_s):
         """Set the autosave interval in the notebook (in seconds).
         
         The default value is 120, or two minutes.
         ``%autosave 0`` will disable autosave.
         
         This magic only has an effect when called from the notebook interface.
         It has no effect when called in a startup file.
         """
         
         try:
             interval = int(arg_s)
         except ValueError:
             raise UsageError("%%autosave requires an integer, got %r" % arg_s)
         
         # javascript wants milliseconds
         milliseconds = 1000 * interval
         display(Javascript("IPython.notebook.set_autosave_interval(%i)" % milliseconds),
             include=['application/javascript']
         )
         if interval:
             print("Autosaving every %i seconds" % interval)
         else:
             print("Autosave disabled")
 
 
 class ZMQInteractiveShell(InteractiveShell):
     """A subclass of InteractiveShell for ZMQ."""
 
     displayhook_class = Type(ZMQShellDisplayHook)
     display_pub_class = Type(ZMQDisplayPublisher)
     data_pub_class = Type(ZMQDataPublisher)
     kernel = Any()
     parent_header = Any()
 
     # Override the traitlet in the parent class, because there's no point using
     # readline for the kernel. Can be removed when the readline code is moved
     # to the terminal frontend.
     colors_force = CBool(True)
     readline_use = CBool(False)
     # autoindent has no meaning in a zmqshell, and attempting to enable it
     # will print a warning in the absence of readline.
     autoindent = CBool(False)
 
     exiter = Instance(ZMQExitAutocall)
     def _exiter_default(self):
         return ZMQExitAutocall(self)
     
     def _exit_now_changed(self, name, old, new):
         """stop eventloop when exit_now fires"""
         if new:
             loop = ioloop.IOLoop.instance()
             loop.add_timeout(time.time()+0.1, loop.stop)
 
     keepkernel_on_exit = None
 
     # Over ZeroMQ, GUI control isn't done with PyOS_InputHook as there is no
     # interactive input being read; we provide event loop support in ipkernel
     @staticmethod
     def enable_gui(gui):
         from .eventloops import enable_gui as real_enable_gui
         try:
             real_enable_gui(gui)
         except ValueError as e:
             raise UsageError("%s" % e)
 
     def init_environment(self):
         """Configure the user's environment.
 
         """
         env = os.environ
         # These two ensure 'ls' produces nice coloring on BSD-derived systems
         env['TERM'] = 'xterm-color'
         env['CLICOLOR'] = '1'
         # Since normal pagers don't work at all (over pexpect we don't have
         # single-key control of the subprocess), try to disable paging in
         # subprocesses as much as possible.
         env['PAGER'] = 'cat'
         env['GIT_PAGER'] = 'cat'
         
         # And install the payload version of page.
         install_payload_page()
 
     def auto_rewrite_input(self, cmd):
         """Called to show the auto-rewritten input for autocall and friends.
 
         FIXME: this payload is currently not correctly processed by the
         frontend.
         """
         new = self.prompt_manager.render('rewrite') + cmd
         payload = dict(
             source='auto_rewrite_input',
             transformed_input=new,
             )
         self.payload_manager.write_payload(payload)
 
     def ask_exit(self):
         """Engage the exit actions."""
         self.exit_now = True
         payload = dict(
             source='ask_exit',
             exit=True,
             keepkernel=self.keepkernel_on_exit,
             )
         self.payload_manager.write_payload(payload)
 
     def _showtraceback(self, etype, evalue, stb):
 
         exc_content = {
             u'traceback' : stb,
             u'ename' : unicode_type(etype.__name__),
             u'evalue' : py3compat.safe_unicode(evalue),
         }
 
         dh = self.displayhook
         # Send exception info over pub socket for other clients than the caller
         # to pick up
         topic = None
         if dh.topic:
             topic = dh.topic.replace(b'pyout', b'pyerr')
         
         exc_msg = dh.session.send(dh.pub_socket, u'pyerr', json_clean(exc_content), dh.parent_header, ident=topic)
 
         # FIXME - Hack: store exception info in shell object.  Right now, the
         # caller is reading this info after the fact, we need to fix this logic
         # to remove this hack.  Even uglier, we need to store the error status
         # here, because in the main loop, the logic that sets it is being
         # skipped because runlines swallows the exceptions.
         exc_content[u'status'] = u'error'
         self._reply_content = exc_content
         # /FIXME
 
         return exc_content
 
     def set_next_input(self, text):
         """Send the specified text to the frontend to be presented at the next
         input cell."""
         payload = dict(
             source='set_next_input',
             text=text
         )
         self.payload_manager.write_payload(payload)
     
     def set_parent(self, parent):
         """Set the parent header for associating output with its triggering input"""
         self.parent_header = parent
         self.displayhook.set_parent(parent)
         self.display_pub.set_parent(parent)
         self.data_pub.set_parent(parent)
         try:
             sys.stdout.set_parent(parent)
         except AttributeError:
             pass
         try:
             sys.stderr.set_parent(parent)
         except AttributeError:
             pass
     
     def get_parent(self):
         return self.parent_header
     
     #-------------------------------------------------------------------------
     # Things related to magics
     #-------------------------------------------------------------------------
 
     def init_magics(self):
         super(ZMQInteractiveShell, self).init_magics()
         self.register_magics(KernelMagics)
         self.magics_manager.register_alias('ed', 'edit')
     
     def init_comms(self):
         self.comm_manager = CommManager(shell=self, parent=self)
         self.configurables.append(self.comm_manager)
 
 
 InteractiveShellABC.register(ZMQInteractiveShell)

IPython/lib/backgroundjobs.py

@@ -1,486 +1,491 b''
 # -*- coding: utf-8 -*-
 """Manage background (threaded) jobs conveniently from an interactive shell.
 
 This module provides a BackgroundJobManager class.  This is the main class
 meant for public usage, it implements an object which can create and manage
 new background jobs.
 
 It also provides the actual job classes managed by these BackgroundJobManager
 objects, see their docstrings below.
 
 
 This system was inspired by discussions with B. Granger and the
 BackgroundCommand class described in the book Python Scripting for
 Computational Science, by H. P. Langtangen:
 
 http://folk.uio.no/hpl/scripting
 
 (although ultimately no code from this text was used, as IPython's system is a
 separate implementation).
 
 An example notebook is provided in our documentation illustrating interactive
 use of the system.
 """
 from __future__ import print_function
 
 #*****************************************************************************
 #       Copyright (C) 2005-2006 Fernando Perez <[e-mail]>
 #
 #  Distributed under the terms of the BSD License.  The full license is in
 #  the file COPYING, distributed as part of this software.
 #*****************************************************************************
 
 # Code begins
 import sys
 import threading
 
 from IPython import get_ipython
 from IPython.core.ultratb import AutoFormattedTB
 from IPython.utils.warn import error
 from IPython.utils.py3compat import string_types
 
 
 class BackgroundJobManager(object):
     """Class to manage a pool of backgrounded threaded jobs.
 
     Below, we assume that 'jobs' is a BackgroundJobManager instance.
     
     Usage summary (see the method docstrings for details):
 
       jobs.new(...) -> start a new job
       
       jobs() or jobs.status() -> print status summary of all jobs
 
       jobs[N] -> returns job number N.
 
       foo = jobs[N].result -> assign to variable foo the result of job N
 
       jobs[N].traceback() -> print the traceback of dead job N
 
       jobs.remove(N) -> remove (finished) job N
 
       jobs.flush() -> remove all finished jobs
       
     As a convenience feature, BackgroundJobManager instances provide the
     utility result and traceback methods which retrieve the corresponding
     information from the jobs list:
 
       jobs.result(N) <--> jobs[N].result
       jobs.traceback(N) <--> jobs[N].traceback()
 
     While this appears minor, it allows you to use tab completion
     interactively on the job manager instance.
     """
 
     def __init__(self):
         # Lists for job management, accessed via a property to ensure they're
         # up to date.x
         self._running  = []
         self._completed = []
         self._dead = []
         # A dict of all jobs, so users can easily access any of them
         self.all = {}
         # For reporting
         self._comp_report = []
         self._dead_report = []
         # Store status codes locally for fast lookups
         self._s_created   = BackgroundJobBase.stat_created_c
         self._s_running   = BackgroundJobBase.stat_running_c
         self._s_completed = BackgroundJobBase.stat_completed_c
         self._s_dead      = BackgroundJobBase.stat_dead_c
 
     @property
     def running(self):
         self._update_status()
         return self._running
 
     @property
     def dead(self):
         self._update_status()
         return self._dead
 
     @property
     def completed(self):
         self._update_status()
         return self._completed
 
     def new(self, func_or_exp, *args, **kwargs):
         """Add a new background job and start it in a separate thread.
 
         There are two types of jobs which can be created:
 
         1. Jobs based on expressions which can be passed to an eval() call.
         The expression must be given as a string.  For example:
 
           job_manager.new('myfunc(x,y,z=1)'[,glob[,loc]])
 
         The given expression is passed to eval(), along with the optional
         global/local dicts provided.  If no dicts are given, they are
         extracted automatically from the caller's frame.
         
         A Python statement is NOT a valid eval() expression.  Basically, you
         can only use as an eval() argument something which can go on the right
         of an '=' sign and be assigned to a variable.
 
         For example,"print 'hello'" is not valid, but '2+3' is.
 
         2. Jobs given a function object, optionally passing additional
         positional arguments:
 
           job_manager.new(myfunc, x, y)
 
         The function is called with the given arguments.
 
         If you need to pass keyword arguments to your function, you must
         supply them as a dict named kw:
 
           job_manager.new(myfunc, x, y, kw=dict(z=1))
 
         The reason for this assymmetry is that the new() method needs to
         maintain access to its own keywords, and this prevents name collisions
         between arguments to new() and arguments to your own functions.
 
         In both cases, the result is stored in the job.result field of the
         background job object.
 
         You can set `daemon` attribute of the thread by giving the keyword
         argument `daemon`.
 
         Notes and caveats:
 
         1. All threads running share the same standard output.  Thus, if your
         background jobs generate output, it will come out on top of whatever
         you are currently writing.  For this reason, background jobs are best
         used with silent functions which simply return their output.
 
         2. Threads also all work within the same global namespace, and this
         system does not lock interactive variables.  So if you send job to the
         background which operates on a mutable object for a long time, and
         start modifying that same mutable object interactively (or in another
         backgrounded job), all sorts of bizarre behaviour will occur.
 
         3. If a background job is spending a lot of time inside a C extension
         module which does not release the Python Global Interpreter Lock
         (GIL), this will block the IPython prompt.  This is simply because the
         Python interpreter can only switch between threads at Python
         bytecodes.  While the execution is inside C code, the interpreter must
         simply wait unless the extension module releases the GIL.
 
         4. There is no way, due to limitations in the Python threads library,
         to kill a thread once it has started."""
         
         if callable(func_or_exp):
             kw  = kwargs.get('kw',{})
             job = BackgroundJobFunc(func_or_exp,*args,**kw)
         elif isinstance(func_or_exp, string_types):
             if not args:
                 frame = sys._getframe(1)
                 glob, loc = frame.f_globals, frame.f_locals
             elif len(args)==1:
                 glob = loc = args[0]
             elif len(args)==2:
                 glob,loc = args
             else:
                 raise ValueError(
                       'Expression jobs take at most 2 args (globals,locals)')
             job = BackgroundJobExpr(func_or_exp, glob, loc)
         else:
             raise TypeError('invalid args for new job')
 
         if kwargs.get('daemon', False):
             job.daemon = True
         job.num = len(self.all)+1 if self.all else 0
         self.running.append(job)
         self.all[job.num] = job
         print('Starting job # %s in a separate thread.' % job.num)
         job.start()
         return job
 
     def __getitem__(self, job_key):
         num = job_key if isinstance(job_key, int) else job_key.num
         return self.all[num]
 
     def __call__(self):
         """An alias to self.status(),
 
         This allows you to simply call a job manager instance much like the
         Unix `jobs` shell command."""
 
         return self.status()
 
     def _update_status(self):
         """Update the status of the job lists.
 
         This method moves finished jobs to one of two lists:
           - self.completed: jobs which completed successfully
           - self.dead: jobs which finished but died.
 
         It also copies those jobs to corresponding _report lists.  These lists
         are used to report jobs completed/dead since the last update, and are
         then cleared by the reporting function after each call."""
 
         # Status codes
         srun, scomp, sdead = self._s_running, self._s_completed, self._s_dead
         # State lists, use the actual lists b/c the public names are properties
         # that call this very function on access
         running, completed, dead = self._running, self._completed, self._dead
 
         # Now, update all state lists
         for num, job in enumerate(running):
             stat = job.stat_code
             if stat == srun:
                 continue
             elif stat == scomp:
                 completed.append(job)
                 self._comp_report.append(job)
                 running[num] = False
             elif stat == sdead:
                 dead.append(job)
                 self._dead_report.append(job)
                 running[num] = False
         # Remove dead/completed jobs from running list
         running[:] = filter(None, running)
 
     def _group_report(self,group,name):
         """Report summary for a given job group.
 
         Return True if the group had any elements."""
 
         if group:
             print('%s jobs:' % name)
             for job in group:
                 print('%s : %s' % (job.num,job))
             print()
             return True
 
     def _group_flush(self,group,name):
         """Flush a given job group
 
         Return True if the group had any elements."""
 
         njobs = len(group)
         if njobs:
             plural = {1:''}.setdefault(njobs,'s')
             print('Flushing %s %s job%s.' % (njobs,name,plural))
             group[:] = []
             return True
         
     def _status_new(self):
         """Print the status of newly finished jobs.
 
         Return True if any new jobs are reported.
 
         This call resets its own state every time, so it only reports jobs
         which have finished since the last time it was called."""
 
         self._update_status()
         new_comp = self._group_report(self._comp_report, 'Completed')
         new_dead = self._group_report(self._dead_report,
                                       'Dead, call jobs.traceback() for details')
         self._comp_report[:] = []
         self._dead_report[:] = []
         return new_comp or new_dead
                 
     def status(self,verbose=0):
         """Print a status of all jobs currently being managed."""
 
         self._update_status()
         self._group_report(self.running,'Running')
         self._group_report(self.completed,'Completed')
         self._group_report(self.dead,'Dead')
         # Also flush the report queues
         self._comp_report[:] = []
         self._dead_report[:] = []
 
     def remove(self,num):
         """Remove a finished (completed or dead) job."""
 
         try:
             job = self.all[num]
         except KeyError:
             error('Job #%s not found' % num)
         else:
             stat_code = job.stat_code
             if stat_code == self._s_running:
                 error('Job #%s is still running, it can not be removed.' % num)
                 return
             elif stat_code == self._s_completed:
                 self.completed.remove(job)
             elif stat_code == self._s_dead:
                 self.dead.remove(job)
 
     def flush(self):
         """Flush all finished jobs (completed and dead) from lists.
 
         Running jobs are never flushed.
 
         It first calls _status_new(), to update info. If any jobs have
         completed since the last _status_new() call, the flush operation
         aborts."""
 
         # Remove the finished jobs from the master dict
         alljobs = self.all
         for job in self.completed+self.dead:
             del(alljobs[job.num])
 
         # Now flush these lists completely
         fl_comp = self._group_flush(self.completed, 'Completed')
         fl_dead = self._group_flush(self.dead, 'Dead')
         if not (fl_comp or fl_dead):
             print('No jobs to flush.')
 
     def result(self,num):
         """result(N) -> return the result of job N."""
         try:
             return self.all[num].result
         except KeyError:
             error('Job #%s not found' % num)
 
     def _traceback(self, job):
         num = job if isinstance(job, int) else job.num
         try:
             self.all[num].traceback()
         except KeyError:
             error('Job #%s not found' % num)
 
     def traceback(self, job=None):
         if job is None:
             self._update_status()
             for deadjob in self.dead:
                 print("Traceback for: %r" % deadjob)
                 self._traceback(deadjob)
                 print()
         else:
             self._traceback(job)
 
 
 class BackgroundJobBase(threading.Thread):
     """Base class to build BackgroundJob classes.
 
     The derived classes must implement:
 
     - Their own __init__, since the one here raises NotImplementedError.  The
-    derived constructor must call self._init() at the end, to provide common
-    initialization.
+      derived constructor must call self._init() at the end, to provide common
+      initialization.
 
     - A strform attribute used in calls to __str__.
 
     - A call() method, which will make the actual execution call and must
-    return a value to be held in the 'result' field of the job object."""
+      return a value to be held in the 'result' field of the job object.
+    """
 
     # Class constants for status, in string and as numerical codes (when
     # updating jobs lists, we don't want to do string comparisons).  This will
     # be done at every user prompt, so it has to be as fast as possible
     stat_created   = 'Created'; stat_created_c = 0
     stat_running   = 'Running'; stat_running_c = 1
     stat_completed = 'Completed'; stat_completed_c = 2
     stat_dead      = 'Dead (Exception), call jobs.traceback() for details'
     stat_dead_c = -1
 
     def __init__(self):
+        """Must be implemented in subclasses.
+
+        Subclasses must call :meth:`_init` for standard initialisation.
+        """
         raise NotImplementedError("This class can not be instantiated directly.")
 
     def _init(self):
         """Common initialization for all BackgroundJob objects"""
         
         for attr in ['call','strform']:
             assert hasattr(self,attr), "Missing attribute <%s>" % attr
         
         # The num tag can be set by an external job manager
         self.num = None
       
         self.status    = BackgroundJobBase.stat_created
         self.stat_code = BackgroundJobBase.stat_created_c
         self.finished  = False
         self.result    = '<BackgroundJob has not completed>'
         
         # reuse the ipython traceback handler if we can get to it, otherwise
         # make a new one
         try:
             make_tb = get_ipython().InteractiveTB.text
         except:
             make_tb = AutoFormattedTB(mode = 'Context',
                                       color_scheme='NoColor',
                                       tb_offset = 1).text
         # Note that the actual API for text() requires the three args to be
         # passed in, so we wrap it in a simple lambda.
         self._make_tb = lambda : make_tb(None, None, None)
 
         # Hold a formatted traceback if one is generated.
         self._tb = None
         
         threading.Thread.__init__(self)
 
     def __str__(self):
         return self.strform
 
     def __repr__(self):
         return '<BackgroundJob #%d: %s>' % (self.num, self.strform)
 
     def traceback(self):
         print(self._tb)
         
     def run(self):
         try:
             self.status    = BackgroundJobBase.stat_running
             self.stat_code = BackgroundJobBase.stat_running_c
             self.result    = self.call()
         except:
             self.status    = BackgroundJobBase.stat_dead
             self.stat_code = BackgroundJobBase.stat_dead_c
             self.finished  = None
             self.result    = ('<BackgroundJob died, call jobs.traceback() for details>')
             self._tb       = self._make_tb()
         else:
             self.status    = BackgroundJobBase.stat_completed
             self.stat_code = BackgroundJobBase.stat_completed_c
             self.finished  = True
 
 
 class BackgroundJobExpr(BackgroundJobBase):
     """Evaluate an expression as a background job (uses a separate thread)."""
 
     def __init__(self, expression, glob=None, loc=None):
         """Create a new job from a string which can be fed to eval().
 
         global/locals dicts can be provided, which will be passed to the eval
         call."""
 
         # fail immediately if the given expression can't be compiled
         self.code = compile(expression,'<BackgroundJob compilation>','eval')
                 
         glob = {} if glob is None else glob
         loc = {} if loc is None else loc
         self.expression = self.strform = expression
         self.glob = glob
         self.loc = loc
         self._init()
         
     def call(self):
         return eval(self.code,self.glob,self.loc)
 
 
 class BackgroundJobFunc(BackgroundJobBase):
     """Run a function call as a background job (uses a separate thread)."""
 
     def __init__(self, func, *args, **kwargs):
         """Create a new job from a callable object.
 
         Any positional arguments and keyword args given to this constructor
         after the initial callable are passed directly to it."""
 
         if not callable(func):
             raise TypeError(
                 'first argument to BackgroundJobFunc must be callable')
         
         self.func = func
         self.args = args
         self.kwargs = kwargs
         # The string form will only include the function passed, because
         # generating string representations of the arguments is a potentially
         # _very_ expensive operation (e.g. with large arrays).
         self.strform = str(func)
         self._init()
 
     def call(self):
         return self.func(*self.args, **self.kwargs)