Backport PR #4098: pass profile-dir instead of profile name to Kernel

avoids relative path issues for local profiles when the notebook server starts in a different directory from the kernels.

moves the `profile-dir` alias from the parallel apps up to the base IPython app

Candidate for backport to 1.1

IPython/config/application.py

@@ -1,578 +1,582
 # encoding: utf-8
 """
 A base class for a configurable application.
 
 Authors:
 
 * Brian Granger
 * Min RK
 """
 
 #-----------------------------------------------------------------------------
 #  Copyright (C) 2008-2011  The IPython Development Team
 #
 #  Distributed under the terms of the BSD License.  The full license is in
 #  the file COPYING, distributed as part of this software.
 #-----------------------------------------------------------------------------
 
 #-----------------------------------------------------------------------------
 # Imports
 #-----------------------------------------------------------------------------
 
 import logging
 import os
 import re
 import sys
 from copy import deepcopy
 from collections import defaultdict
 
 from IPython.external.decorator import decorator
 
 from IPython.config.configurable import SingletonConfigurable
 from IPython.config.loader import (
     KVArgParseConfigLoader, PyFileConfigLoader, Config, ArgumentError, ConfigFileNotFound,
 )
 
 from IPython.utils.traitlets import (
     Unicode, List, Enum, Dict, Instance, TraitError
 )
 from IPython.utils.importstring import import_item
 from IPython.utils.text import indent, wrap_paragraphs, dedent
 
 #-----------------------------------------------------------------------------
 # function for re-wrapping a helpstring
 #-----------------------------------------------------------------------------
 
 #-----------------------------------------------------------------------------
 # Descriptions for the various sections
 #-----------------------------------------------------------------------------
 
 # merge flags&aliases into options
 option_description = """
 Arguments that take values are actually convenience aliases to full
 Configurables, whose aliases are listed on the help line. For more information
 on full configurables, see '--help-all'.
 """.strip() # trim newlines of front and back
 
 keyvalue_description = """
 Parameters are set from command-line arguments of the form:
 `--Class.trait=value`.
 This line is evaluated in Python, so simple expressions are allowed, e.g.::
 `--C.a='range(3)'` For setting C.a=[0,1,2].
 """.strip() # trim newlines of front and back
 
 # sys.argv can be missing, for example when python is embedded. See the docs
 # for details: http://docs.python.org/2/c-api/intro.html#embedding-python
 if not hasattr(sys, "argv"):
     sys.argv = [""]
 
 subcommand_description = """
 Subcommands are launched as `{app} cmd [args]`. For information on using
 subcommand 'cmd', do: `{app} cmd -h`.
 """.strip().format(app=os.path.basename(sys.argv[0]))
 # get running program name
 
 #-----------------------------------------------------------------------------
 # Application class
 #-----------------------------------------------------------------------------
 
 @decorator
 def catch_config_error(method, app, *args, **kwargs):
     """Method decorator for catching invalid config (Trait/ArgumentErrors) during init.
 
     On a TraitError (generally caused by bad config), this will print the trait's
     message, and exit the app.
     
     For use on init methods, to prevent invoking excepthook on invalid input.
     """
     try:
         return method(app, *args, **kwargs)
     except (TraitError, ArgumentError) as e:
         app.print_help()
         app.log.fatal("Bad config encountered during initialization:")
         app.log.fatal(str(e))
         app.log.debug("Config at the time: %s", app.config)
         app.exit(1)
 
 
 class ApplicationError(Exception):
     pass
 
 class LevelFormatter(logging.Formatter):
     """Formatter with additional `highlevel` record
     
     This field is empty if log level is less than highlevel_limit,
     otherwise it is formatted with self.highlevel_format.
     
     Useful for adding 'WARNING' to warning messages,
     without adding 'INFO' to info, etc.
     """
     highlevel_limit = logging.WARN
     highlevel_format = " %(levelname)s |"
     
     def format(self, record):
         if record.levelno >= self.highlevel_limit:
             record.highlevel = self.highlevel_format % record.__dict__
         else:
             record.highlevel = ""
         if sys.version_info[:2] > (2,6):
             return super(LevelFormatter, self).format(record)
         else:
             return logging.Formatter.format(self, record)
             
 
 class Application(SingletonConfigurable):
     """A singleton application with full configuration support."""
 
     # The name of the application, will usually match the name of the command
     # line application
     name = Unicode(u'application')
 
     # The description of the application that is printed at the beginning
     # of the help.
     description = Unicode(u'This is an application.')
     # default section descriptions
     option_description = Unicode(option_description)
     keyvalue_description = Unicode(keyvalue_description)
     subcommand_description = Unicode(subcommand_description)
 
     # The usage and example string that goes at the end of the help string.
     examples = Unicode()
 
     # A sequence of Configurable subclasses whose config=True attributes will
     # be exposed at the command line.
     classes = List([])
 
     # The version string of this application.
     version = Unicode(u'0.0')
 
+    # the argv used to initialize the application
+    argv = List(Unicode)
+
     # The log level for the application
     log_level = Enum((0,10,20,30,40,50,'DEBUG','INFO','WARN','ERROR','CRITICAL'),
                     default_value=logging.WARN,
                     config=True,
                     help="Set the log level by value or name.")
     def _log_level_changed(self, name, old, new):
         """Adjust the log level when log_level is set."""
         if isinstance(new, basestring):
             new = getattr(logging, new)
             self.log_level = new
         self.log.setLevel(new)
     
     log_datefmt = Unicode("%Y-%m-%d %H:%M:%S", config=True,
         help="The date format used by logging formatters for %(asctime)s"
     )
     def _log_datefmt_changed(self, name, old, new):
         self._log_format_changed()
     
     log_format = Unicode("[%(name)s]%(highlevel)s %(message)s", config=True,
         help="The Logging format template",
     )
     def _log_format_changed(self, name, old, new):
         """Change the log formatter when log_format is set."""
         _log_handler = self.log.handlers[0]
         _log_formatter = LevelFormatter(new, datefmt=self.log_datefmt)
         _log_handler.setFormatter(_log_formatter)
 
     log = Instance(logging.Logger)
     def _log_default(self):
         """Start logging for this application.
 
         The default is to log to stderr using a StreamHandler, if no default
         handler already exists.  The log level starts at logging.WARN, but this
         can be adjusted by setting the ``log_level`` attribute.
         """
         log = logging.getLogger(self.__class__.__name__)
         log.setLevel(self.log_level)
         log.propagate = False
         _log = log # copied from Logger.hasHandlers() (new in Python 3.2)
         while _log:
             if _log.handlers:
                 return log
             if not _log.propagate:
                 break
             else:
                 _log = _log.parent
         if sys.executable.endswith('pythonw.exe'):
             # this should really go to a file, but file-logging is only
             # hooked up in parallel applications
             _log_handler = logging.StreamHandler(open(os.devnull, 'w'))
         else:
             _log_handler = logging.StreamHandler()
         _log_formatter = LevelFormatter(self.log_format, datefmt=self.log_datefmt)
         _log_handler.setFormatter(_log_formatter)
         log.addHandler(_log_handler)
         return log
 
     # the alias map for configurables
     aliases = Dict({'log-level' : 'Application.log_level'})
 
     # flags for loading Configurables or store_const style flags
     # flags are loaded from this dict by '--key' flags
     # this must be a dict of two-tuples, the first element being the Config/dict
     # and the second being the help string for the flag
     flags = Dict()
     def _flags_changed(self, name, old, new):
         """ensure flags dict is valid"""
         for key,value in new.iteritems():
             assert len(value) == 2, "Bad flag: %r:%s"%(key,value)
             assert isinstance(value[0], (dict, Config)), "Bad flag: %r:%s"%(key,value)
             assert isinstance(value[1], basestring), "Bad flag: %r:%s"%(key,value)
 
 
     # subcommands for launching other applications
     # if this is not empty, this will be a parent Application
     # this must be a dict of two-tuples,
     # the first element being the application class/import string
     # and the second being the help string for the subcommand
     subcommands = Dict()
     # parse_command_line will initialize a subapp, if requested
     subapp = Instance('IPython.config.application.Application', allow_none=True)
 
     # extra command-line arguments that don't set config values
     extra_args = List(Unicode)
 
 
     def __init__(self, **kwargs):
         SingletonConfigurable.__init__(self, **kwargs)
         # Ensure my class is in self.classes, so my attributes appear in command line
         # options and config files.
         if self.__class__ not in self.classes:
             self.classes.insert(0, self.__class__)
 
     def _config_changed(self, name, old, new):
         SingletonConfigurable._config_changed(self, name, old, new)
         self.log.debug('Config changed:')
         self.log.debug(repr(new))
 
     @catch_config_error
     def initialize(self, argv=None):
         """Do the basic steps to configure me.
 
         Override in subclasses.
         """
         self.parse_command_line(argv)
 
 
     def start(self):
         """Start the app mainloop.
 
         Override in subclasses.
         """
         if self.subapp is not None:
             return self.subapp.start()
 
     def print_alias_help(self):
         """Print the alias part of the help."""
         if not self.aliases:
             return
 
         lines = []
         classdict = {}
         for cls in self.classes:
             # include all parents (up to, but excluding Configurable) in available names
             for c in cls.mro()[:-3]:
                 classdict[c.__name__] = c
 
         for alias, longname in self.aliases.iteritems():
             classname, traitname = longname.split('.',1)
             cls = classdict[classname]
 
             trait = cls.class_traits(config=True)[traitname]
             help = cls.class_get_trait_help(trait).splitlines()
             # reformat first line
             help[0] = help[0].replace(longname, alias) + ' (%s)'%longname
             if len(alias) == 1:
                 help[0] = help[0].replace('--%s='%alias, '-%s '%alias)
             lines.extend(help)
         # lines.append('')
         print os.linesep.join(lines)
 
     def print_flag_help(self):
         """Print the flag part of the help."""
         if not self.flags:
             return
 
         lines = []
         for m, (cfg,help) in self.flags.iteritems():
             prefix = '--' if len(m) > 1 else '-'
             lines.append(prefix+m)
             lines.append(indent(dedent(help.strip())))
         # lines.append('')
         print os.linesep.join(lines)
 
     def print_options(self):
         if not self.flags and not self.aliases:
             return
         lines = ['Options']
         lines.append('-'*len(lines[0]))
         lines.append('')
         for p in wrap_paragraphs(self.option_description):
             lines.append(p)
             lines.append('')
         print os.linesep.join(lines)
         self.print_flag_help()
         self.print_alias_help()
         print
 
     def print_subcommands(self):
         """Print the subcommand part of the help."""
         if not self.subcommands:
             return
 
         lines = ["Subcommands"]
         lines.append('-'*len(lines[0]))
         lines.append('')
         for p in wrap_paragraphs(self.subcommand_description):
             lines.append(p)
             lines.append('')
         for subc, (cls, help) in self.subcommands.iteritems():
             lines.append(subc)
             if help:
                 lines.append(indent(dedent(help.strip())))
         lines.append('')
         print os.linesep.join(lines)
 
     def print_help(self, classes=False):
         """Print the help for each Configurable class in self.classes.
 
         If classes=False (the default), only flags and aliases are printed.
         """
         self.print_description()
         self.print_subcommands()
         self.print_options()
 
         if classes:
             if self.classes:
                 print "Class parameters"
                 print "----------------"
                 print
                 for p in wrap_paragraphs(self.keyvalue_description):
                     print p
                     print
 
             for cls in self.classes:
                 cls.class_print_help()
                 print
         else:
             print "To see all available configurables, use `--help-all`"
             print
 
         self.print_examples()
 
 
     def print_description(self):
         """Print the application description."""
         for p in wrap_paragraphs(self.description):
             print p
             print
 
     def print_examples(self):
         """Print usage and examples.
 
         This usage string goes at the end of the command line help string
         and should contain examples of the application's usage.
         """
         if self.examples:
             print "Examples"
             print "--------"
             print
             print indent(dedent(self.examples.strip()))
             print
 
     def print_version(self):
         """Print the version string."""
         print self.version
 
     def update_config(self, config):
         """Fire the traits events when the config is updated."""
         # Save a copy of the current config.
         newconfig = deepcopy(self.config)
         # Merge the new config into the current one.
         newconfig.merge(config)
         # Save the combined config as self.config, which triggers the traits
         # events.
         self.config = newconfig
 
     @catch_config_error
     def initialize_subcommand(self, subc, argv=None):
         """Initialize a subcommand with argv."""
         subapp,help = self.subcommands.get(subc)
 
         if isinstance(subapp, basestring):
             subapp = import_item(subapp)
 
         # clear existing instances
         self.__class__.clear_instance()
         # instantiate
         self.subapp = subapp.instance(config=self.config)
         # and initialize subapp
         self.subapp.initialize(argv)
     
     def flatten_flags(self):
         """flatten flags and aliases, so cl-args override as expected.
         
         This prevents issues such as an alias pointing to InteractiveShell,
         but a config file setting the same trait in TerminalInteraciveShell
         getting inappropriate priority over the command-line arg.
 
         Only aliases with exactly one descendent in the class list
         will be promoted.
         
         """
         # build a tree of classes in our list that inherit from a particular
         # it will be a dict by parent classname of classes in our list
         # that are descendents
         mro_tree = defaultdict(list)
         for cls in self.classes:
             clsname = cls.__name__
             for parent in cls.mro()[1:-3]:
                 # exclude cls itself and Configurable,HasTraits,object
                 mro_tree[parent.__name__].append(clsname)
         # flatten aliases, which have the form:
         # { 'alias' : 'Class.trait' }
         aliases = {}
         for alias, cls_trait in self.aliases.iteritems():
             cls,trait = cls_trait.split('.',1)
             children = mro_tree[cls]
             if len(children) == 1:
                 # exactly one descendent, promote alias
                 cls = children[0]
             aliases[alias] = '.'.join([cls,trait])
         
         # flatten flags, which are of the form:
         # { 'key' : ({'Cls' : {'trait' : value}}, 'help')}
         flags = {}
         for key, (flagdict, help) in self.flags.iteritems():
             newflag = {}
             for cls, subdict in flagdict.iteritems():
                 children = mro_tree[cls]
                 # exactly one descendent, promote flag section
                 if len(children) == 1:
                     cls = children[0]
                 newflag[cls] = subdict
             flags[key] = (newflag, help)
         return flags, aliases
 
     @catch_config_error
     def parse_command_line(self, argv=None):
         """Parse the command line arguments."""
         argv = sys.argv[1:] if argv is None else argv
+        self.argv = list(argv)
         
         if argv and argv[0] == 'help':
             # turn `ipython help notebook` into `ipython notebook -h`
             argv = argv[1:] + ['-h']
 
         if self.subcommands and len(argv) > 0:
             # we have subcommands, and one may have been specified
             subc, subargv = argv[0], argv[1:]
             if re.match(r'^\w(\-?\w)*$', subc) and subc in self.subcommands:
                 # it's a subcommand, and *not* a flag or class parameter
                 return self.initialize_subcommand(subc, subargv)
 
         # Arguments after a '--' argument are for the script IPython may be
         # about to run, not IPython iteslf. For arguments parsed here (help and
         # version), we want to only search the arguments up to the first
         # occurrence of '--', which we're calling interpreted_argv.
         try:
             interpreted_argv = argv[:argv.index('--')]
         except ValueError:
             interpreted_argv = argv
 
         if any(x in interpreted_argv for x in ('-h', '--help-all', '--help')):
             self.print_help('--help-all' in interpreted_argv)
             self.exit(0)
 
         if '--version' in interpreted_argv or '-V' in interpreted_argv:
             self.print_version()
             self.exit(0)
         
         # flatten flags&aliases, so cl-args get appropriate priority:
         flags,aliases = self.flatten_flags()
 
         loader = KVArgParseConfigLoader(argv=argv, aliases=aliases,
                                         flags=flags)
         config = loader.load_config()
         self.update_config(config)
         # store unparsed args in extra_args
         self.extra_args = loader.extra_args
 
     @catch_config_error
     def load_config_file(self, filename, path=None):
         """Load a .py based config file by filename and path."""
         loader = PyFileConfigLoader(filename, path=path)
         try:
             config = loader.load_config()
         except ConfigFileNotFound:
             # problem finding the file, raise
             raise
         except Exception:
             # try to get the full filename, but it will be empty in the
             # unlikely event that the error raised before filefind finished
             filename = loader.full_filename or filename
             # problem while running the file
             self.log.error("Exception while loading config file %s",
                             filename, exc_info=True)
         else:
             self.log.debug("Loaded config file: %s", loader.full_filename)
             self.update_config(config)
 
     def generate_config_file(self):
         """generate default config file from Configurables"""
         lines = ["# Configuration file for %s."%self.name]
         lines.append('')
         lines.append('c = get_config()')
         lines.append('')
         for cls in self.classes:
             lines.append(cls.class_config_section())
         return '\n'.join(lines)
 
     def exit(self, exit_status=0):
         self.log.debug("Exiting application: %s" % self.name)
         sys.exit(exit_status)
 
     @classmethod
     def launch_instance(cls, argv=None, **kwargs):
         """Launch a global instance of this Application
         
         If a global instance already exists, this reinitializes and starts it
         """
         app = cls.instance(**kwargs)
         app.initialize(argv)
         app.start()
 
 #-----------------------------------------------------------------------------
 # utility functions, for convenience
 #-----------------------------------------------------------------------------
 
 def boolean_flag(name, configurable, set_help='', unset_help=''):
     """Helper for building basic --trait, --no-trait flags.
 
     Parameters
     ----------
 
     name : str
         The name of the flag.
     configurable : str
         The 'Class.trait' string of the trait to be set/unset with the flag
     set_help : unicode
         help string for --name flag
     unset_help : unicode
         help string for --no-name flag
 
     Returns
     -------
 
     cfg : dict
         A dict with two keys: 'name', and 'no-name', for setting and unsetting
         the trait, respectively.
     """
     # default helpstrings
     set_help = set_help or "set %s=True"%configurable
     unset_help = unset_help or "set %s=False"%configurable
 
     cls,trait = configurable.split('.')
 
     setter = {cls : {trait : True}}
     unsetter = {cls : {trait : False}}
     return {name : (setter, set_help), 'no-'+name : (unsetter, unset_help)}
 

IPython/core/application.py

@@ -1,372 +1,373
 # encoding: utf-8
 """
 An application for IPython.
 
 All top-level applications should use the classes in this module for
 handling configuration and creating componenets.
 
 The job of an :class:`Application` is to create the master configuration
 object and then create the configurable objects, passing the config to them.
 
 Authors:
 
 * Brian Granger
 * Fernando Perez
 * Min RK
 
 """
 
 #-----------------------------------------------------------------------------
 #  Copyright (C) 2008-2011  The IPython Development Team
 #
 #  Distributed under the terms of the BSD License.  The full license is in
 #  the file COPYING, distributed as part of this software.
 #-----------------------------------------------------------------------------
 
 #-----------------------------------------------------------------------------
 # Imports
 #-----------------------------------------------------------------------------
 
 import atexit
 import glob
 import logging
 import os
 import shutil
 import sys
 
 from IPython.config.application import Application, catch_config_error
 from IPython.config.loader import ConfigFileNotFound
 from IPython.core import release, crashhandler
 from IPython.core.profiledir import ProfileDir, ProfileDirError
 from IPython.utils.path import get_ipython_dir, get_ipython_package_dir
 from IPython.utils.traitlets import List, Unicode, Type, Bool, Dict, Set, Instance
 
 #-----------------------------------------------------------------------------
 # Classes and functions
 #-----------------------------------------------------------------------------
 
 
 #-----------------------------------------------------------------------------
 # Base Application Class
 #-----------------------------------------------------------------------------
 
 # aliases and flags
 
 base_aliases = {
+    'profile-dir' : 'ProfileDir.location',
     'profile' : 'BaseIPythonApplication.profile',
     'ipython-dir' : 'BaseIPythonApplication.ipython_dir',
     'log-level' : 'Application.log_level',
     'config' : 'BaseIPythonApplication.extra_config_file',
 }
 
 base_flags = dict(
     debug = ({'Application' : {'log_level' : logging.DEBUG}},
             "set log level to logging.DEBUG (maximize logging output)"),
     quiet = ({'Application' : {'log_level' : logging.CRITICAL}},
             "set log level to logging.CRITICAL (minimize logging output)"),
     init = ({'BaseIPythonApplication' : {
                     'copy_config_files' : True,
                     'auto_create' : True}
             }, """Initialize profile with default config files.  This is equivalent
             to running `ipython profile create <profile>` prior to startup.
             """)
 )
 
 
 class BaseIPythonApplication(Application):
 
     name = Unicode(u'ipython')
     description = Unicode(u'IPython: an enhanced interactive Python shell.')
     version = Unicode(release.version)
 
     aliases = Dict(base_aliases)
     flags = Dict(base_flags)
     classes = List([ProfileDir])
 
     # Track whether the config_file has changed,
     # because some logic happens only if we aren't using the default.
     config_file_specified = Set()
 
     config_file_name = Unicode()
     def _config_file_name_default(self):
         return self.name.replace('-','_') + u'_config.py'
     def _config_file_name_changed(self, name, old, new):
         if new != old:
             self.config_file_specified.add(new)
 
     # The directory that contains IPython's builtin profiles.
     builtin_profile_dir = Unicode(
         os.path.join(get_ipython_package_dir(), u'config', u'profile', u'default')
     )
 
     config_file_paths = List(Unicode)
     def _config_file_paths_default(self):
         return [os.getcwdu()]
 
     extra_config_file = Unicode(config=True,
     help="""Path to an extra config file to load.
     
     If specified, load this config file in addition to any other IPython config.
     """)
     def _extra_config_file_changed(self, name, old, new):
         try:
             self.config_files.remove(old)
         except ValueError:
             pass
         self.config_file_specified.add(new)
         self.config_files.append(new)
 
     profile = Unicode(u'default', config=True,
         help="""The IPython profile to use."""
     )
 
     def _profile_changed(self, name, old, new):
         self.builtin_profile_dir = os.path.join(
                 get_ipython_package_dir(), u'config', u'profile', new
         )
 
     ipython_dir = Unicode(get_ipython_dir(), config=True,
         help="""
         The name of the IPython directory. This directory is used for logging
         configuration (through profiles), history storage, etc. The default
         is usually $HOME/.ipython. This options can also be specified through
         the environment variable IPYTHONDIR.
         """
     )
     _in_init_profile_dir = False
     profile_dir = Instance(ProfileDir)
     def _profile_dir_default(self):
         # avoid recursion
         if self._in_init_profile_dir:
             return
         # profile_dir requested early, force initialization
         self.init_profile_dir()
         return self.profile_dir
 
     overwrite = Bool(False, config=True,
         help="""Whether to overwrite existing config files when copying""")
     auto_create = Bool(False, config=True,
         help="""Whether to create profile dir if it doesn't exist""")
 
     config_files = List(Unicode)
     def _config_files_default(self):
         return [self.config_file_name]
 
     copy_config_files = Bool(False, config=True,
         help="""Whether to install the default config files into the profile dir.
         If a new profile is being created, and IPython contains config files for that
         profile, then they will be staged into the new directory.  Otherwise,
         default config files will be automatically generated.
         """)
     
     verbose_crash = Bool(False, config=True,
         help="""Create a massive crash report when IPython encounters what may be an
         internal error.  The default is to append a short message to the
         usual traceback""")
 
     # The class to use as the crash handler.
     crash_handler_class = Type(crashhandler.CrashHandler)
 
     @catch_config_error
     def __init__(self, **kwargs):
         super(BaseIPythonApplication, self).__init__(**kwargs)
         # ensure current working directory exists
         try:
             directory = os.getcwdu()
         except:
             # raise exception
             self.log.error("Current working directory doesn't exist.")
             raise
 
         # ensure even default IPYTHONDIR exists
         if not os.path.exists(self.ipython_dir):
             self._ipython_dir_changed('ipython_dir', self.ipython_dir, self.ipython_dir)
 
     #-------------------------------------------------------------------------
     # Various stages of Application creation
     #-------------------------------------------------------------------------
 
     def init_crash_handler(self):
         """Create a crash handler, typically setting sys.excepthook to it."""
         self.crash_handler = self.crash_handler_class(self)
         sys.excepthook = self.excepthook
         def unset_crashhandler():
             sys.excepthook = sys.__excepthook__
         atexit.register(unset_crashhandler)
     
     def excepthook(self, etype, evalue, tb):
         """this is sys.excepthook after init_crashhandler
         
         set self.verbose_crash=True to use our full crashhandler, instead of
         a regular traceback with a short message (crash_handler_lite)
         """
         
         if self.verbose_crash:
             return self.crash_handler(etype, evalue, tb)
         else:
             return crashhandler.crash_handler_lite(etype, evalue, tb)
     
     def _ipython_dir_changed(self, name, old, new):
         if old in sys.path:
             sys.path.remove(old)
         sys.path.append(os.path.abspath(new))
         if not os.path.isdir(new):
             os.makedirs(new, mode=0o777)
         readme = os.path.join(new, 'README')
         if not os.path.exists(readme):
             path = os.path.join(get_ipython_package_dir(), u'config', u'profile')
             shutil.copy(os.path.join(path, 'README'), readme)
         self.log.debug("IPYTHONDIR set to: %s" % new)
 
     def load_config_file(self, suppress_errors=True):
         """Load the config file.
 
         By default, errors in loading config are handled, and a warning
         printed on screen. For testing, the suppress_errors option is set
         to False, so errors will make tests fail.
         """
         self.log.debug("Searching path %s for config files", self.config_file_paths)
         base_config = 'ipython_config.py'
         self.log.debug("Attempting to load config file: %s" %
                        base_config)
         try:
             Application.load_config_file(
                 self,
                 base_config,
                 path=self.config_file_paths
             )
         except ConfigFileNotFound:
             # ignore errors loading parent
             self.log.debug("Config file %s not found", base_config)
             pass
         
         for config_file_name in self.config_files:
             if not config_file_name or config_file_name == base_config:
                 continue
             self.log.debug("Attempting to load config file: %s" %
                            self.config_file_name)
             try:
                 Application.load_config_file(
                     self,
                     config_file_name,
                     path=self.config_file_paths
                 )
             except ConfigFileNotFound:
                 # Only warn if the default config file was NOT being used.
                 if config_file_name in self.config_file_specified:
                     msg = self.log.warn
                 else:
                     msg = self.log.debug
                 msg("Config file not found, skipping: %s", config_file_name)
             except:
                 # For testing purposes.
                 if not suppress_errors:
                     raise
                 self.log.warn("Error loading config file: %s" %
                               self.config_file_name, exc_info=True)
 
     def init_profile_dir(self):
         """initialize the profile dir"""
         self._in_init_profile_dir = True
         if self.profile_dir is not None:
             # already ran
             return
         try:
             # location explicitly specified:
             location = self.config.ProfileDir.location
         except AttributeError:
             # location not specified, find by profile name
             try:
                 p = ProfileDir.find_profile_dir_by_name(self.ipython_dir, self.profile, self.config)
             except ProfileDirError:
                 # not found, maybe create it (always create default profile)
                 if self.auto_create or self.profile == 'default':
                     try:
                         p = ProfileDir.create_profile_dir_by_name(self.ipython_dir, self.profile, self.config)
                     except ProfileDirError:
                         self.log.fatal("Could not create profile: %r"%self.profile)
                         self.exit(1)
                     else:
                         self.log.info("Created profile dir: %r"%p.location)
                 else:
                     self.log.fatal("Profile %r not found."%self.profile)
                     self.exit(1)
             else:
                 self.log.info("Using existing profile dir: %r"%p.location)
         else:
             # location is fully specified
             try:
                 p = ProfileDir.find_profile_dir(location, self.config)
             except ProfileDirError:
                 # not found, maybe create it
                 if self.auto_create:
                     try:
                         p = ProfileDir.create_profile_dir(location, self.config)
                     except ProfileDirError:
                         self.log.fatal("Could not create profile directory: %r"%location)
                         self.exit(1)
                     else:
                         self.log.info("Creating new profile dir: %r"%location)
                 else:
                     self.log.fatal("Profile directory %r not found."%location)
                     self.exit(1)
             else:
                 self.log.info("Using existing profile dir: %r"%location)
 
         self.profile_dir = p
         self.config_file_paths.append(p.location)
         self._in_init_profile_dir = False
 
     def init_config_files(self):
         """[optionally] copy default config files into profile dir."""
         # copy config files
         path = self.builtin_profile_dir
         if self.copy_config_files:
             src = self.profile
 
             cfg = self.config_file_name
             if path and os.path.exists(os.path.join(path, cfg)):
                 self.log.warn("Staging %r from %s into %r [overwrite=%s]"%(
                         cfg, src, self.profile_dir.location, self.overwrite)
                 )
                 self.profile_dir.copy_config_file(cfg, path=path, overwrite=self.overwrite)
             else:
                 self.stage_default_config_file()
         else:
             # Still stage *bundled* config files, but not generated ones
             # This is necessary for `ipython profile=sympy` to load the profile
             # on the first go
             files = glob.glob(os.path.join(path, '*.py'))
             for fullpath in files:
                 cfg = os.path.basename(fullpath)
                 if self.profile_dir.copy_config_file(cfg, path=path, overwrite=False):
                     # file was copied
                     self.log.warn("Staging bundled %s from %s into %r"%(
                             cfg, self.profile, self.profile_dir.location)
                     )
 
 
     def stage_default_config_file(self):
         """auto generate default config file, and stage it into the profile."""
         s = self.generate_config_file()
         fname = os.path.join(self.profile_dir.location, self.config_file_name)
         if self.overwrite or not os.path.exists(fname):
             self.log.warn("Generating default config file: %r"%(fname))
             with open(fname, 'w') as f:
                 f.write(s)
 
     @catch_config_error
     def initialize(self, argv=None):
         # don't hook up crash handler before parsing command-line
         self.parse_command_line(argv)
         self.init_crash_handler()
         if self.subapp is not None:
             # stop here if subapp is taking over
             return
         cl_config = self.config
         self.init_profile_dir()
         self.init_config_files()
         self.load_config_file()
         # enforce cl-opts override configfile opts:
         self.update_config(cl_config)
 

IPython/html/notebookapp.py

@@ -1,723 +1,726
 # coding: utf-8
 """A tornado based IPython notebook server.
 
 Authors:
 
 * Brian Granger
 """
 #-----------------------------------------------------------------------------
 #  Copyright (C) 2013  The IPython Development Team
 #
 #  Distributed under the terms of the BSD License.  The full license is in
 #  the file COPYING, distributed as part of this software.
 #-----------------------------------------------------------------------------
 
 #-----------------------------------------------------------------------------
 # Imports
 #-----------------------------------------------------------------------------
 
 # stdlib
 import errno
 import logging
 import os
 import random
 import select
 import signal
 import socket
 import sys
 import threading
 import time
 import webbrowser
 
 
 # Third party
 # check for pyzmq 2.1.11
 from IPython.utils.zmqrelated import check_for_zmq
 check_for_zmq('2.1.11', 'IPython.html')
 
 from jinja2 import Environment, FileSystemLoader
 
 # Install the pyzmq ioloop. This has to be done before anything else from
 # tornado is imported.
 from zmq.eventloop import ioloop
 ioloop.install()
 
 # check for tornado 2.1.0
 msg = "The IPython Notebook requires tornado >= 2.1.0"
 try:
     import tornado
 except ImportError:
     raise ImportError(msg)
 try:
     version_info = tornado.version_info
 except AttributeError:
     raise ImportError(msg + ", but you have < 1.1.0")
 if version_info < (2,1,0):
     raise ImportError(msg + ", but you have %s" % tornado.version)
 
 from tornado import httpserver
 from tornado import web
 
 # Our own libraries
 from IPython.html import DEFAULT_STATIC_FILES_PATH
 
 from .services.kernels.kernelmanager import MappingKernelManager
 from .services.notebooks.nbmanager import NotebookManager
 from .services.notebooks.filenbmanager import FileNotebookManager
 from .services.clusters.clustermanager import ClusterManager
 
 from .base.handlers import AuthenticatedFileHandler, FileFindHandler
 
 from IPython.config.application import catch_config_error, boolean_flag
 from IPython.core.application import BaseIPythonApplication
 from IPython.consoleapp import IPythonConsoleApp
 from IPython.kernel import swallow_argv
 from IPython.kernel.zmq.session import default_secure
 from IPython.kernel.zmq.kernelapp import (
     kernel_flags,
     kernel_aliases,
 )
 from IPython.utils.importstring import import_item
 from IPython.utils.localinterfaces import LOCALHOST
 from IPython.utils import submodule
 from IPython.utils.traitlets import (
     Dict, Unicode, Integer, List, Bool, Bytes,
     DottedObjectName
 )
 from IPython.utils import py3compat
 from IPython.utils.path import filefind
 
 from .utils import url_path_join
 
 #-----------------------------------------------------------------------------
 # Module globals
 #-----------------------------------------------------------------------------
 
 _examples = """
 ipython notebook                       # start the notebook
 ipython notebook --profile=sympy       # use the sympy profile
 ipython notebook --certfile=mycert.pem # use SSL/TLS certificate
 """
 
 #-----------------------------------------------------------------------------
 # Helper functions
 #-----------------------------------------------------------------------------
 
 def random_ports(port, n):
     """Generate a list of n random ports near the given port.
 
     The first 5 ports will be sequential, and the remaining n-5 will be
     randomly selected in the range [port-2*n, port+2*n].
     """
     for i in range(min(5, n)):
         yield port + i
     for i in range(n-5):
         yield port + random.randint(-2*n, 2*n)
 
 def load_handlers(name):
     """Load the (URL pattern, handler) tuples for each component."""
     name = 'IPython.html.' + name
     mod = __import__(name, fromlist=['default_handlers'])
     return mod.default_handlers
 
 #-----------------------------------------------------------------------------
 # The Tornado web application
 #-----------------------------------------------------------------------------
 
 class NotebookWebApplication(web.Application):
 
     def __init__(self, ipython_app, kernel_manager, notebook_manager,
                  cluster_manager, log,
                  base_project_url, settings_overrides):
 
         settings = self.init_settings(
             ipython_app, kernel_manager, notebook_manager, cluster_manager,
             log, base_project_url, settings_overrides)
         handlers = self.init_handlers(settings)
 
         super(NotebookWebApplication, self).__init__(handlers, **settings)
 
     def init_settings(self, ipython_app, kernel_manager, notebook_manager,
                       cluster_manager, log,
                       base_project_url, settings_overrides):
         # Python < 2.6.5 doesn't accept unicode keys in f(**kwargs), and
         # base_project_url will always be unicode, which will in turn
         # make the patterns unicode, and ultimately result in unicode
         # keys in kwargs to handler._execute(**kwargs) in tornado.
         # This enforces that base_project_url be ascii in that situation.
         # 
         # Note that the URLs these patterns check against are escaped,
         # and thus guaranteed to be ASCII: 'héllo' is really 'h%C3%A9llo'.
         base_project_url = py3compat.unicode_to_str(base_project_url, 'ascii')
         template_path = settings_overrides.get("template_path", os.path.join(os.path.dirname(__file__), "templates"))
         settings = dict(
             # basics
             base_project_url=base_project_url,
             base_kernel_url=ipython_app.base_kernel_url,
             template_path=template_path,
             static_path=ipython_app.static_file_path,
             static_handler_class = FileFindHandler,
             static_url_prefix = url_path_join(base_project_url,'/static/'),
             
             # authentication
             cookie_secret=ipython_app.cookie_secret,
             login_url=url_path_join(base_project_url,'/login'),
             password=ipython_app.password,
             
             # managers
             kernel_manager=kernel_manager,
             notebook_manager=notebook_manager,
             cluster_manager=cluster_manager,
             
             # IPython stuff
             mathjax_url=ipython_app.mathjax_url,
             config=ipython_app.config,
             use_less=ipython_app.use_less,
             jinja2_env=Environment(loader=FileSystemLoader(template_path)),
         )
 
         # allow custom overrides for the tornado web app.
         settings.update(settings_overrides)
         return settings
 
     def init_handlers(self, settings):
         # Load the (URL pattern, handler) tuples for each component.
         handlers = []
         handlers.extend(load_handlers('base.handlers'))
         handlers.extend(load_handlers('tree.handlers'))
         handlers.extend(load_handlers('auth.login'))
         handlers.extend(load_handlers('auth.logout'))
         handlers.extend(load_handlers('notebook.handlers'))
         handlers.extend(load_handlers('services.kernels.handlers'))
         handlers.extend(load_handlers('services.notebooks.handlers'))
         handlers.extend(load_handlers('services.clusters.handlers'))
         handlers.extend([
             (r"/files/(.*)", AuthenticatedFileHandler, {'path' : settings['notebook_manager'].notebook_dir}),
         ])
         # prepend base_project_url onto the patterns that we match
         new_handlers = []
         for handler in handlers:
             pattern = url_path_join(settings['base_project_url'], handler[0])
             new_handler = tuple([pattern] + list(handler[1:]))
             new_handlers.append(new_handler)
         return new_handlers
 
 
 
 #-----------------------------------------------------------------------------
 # Aliases and Flags
 #-----------------------------------------------------------------------------
 
 flags = dict(kernel_flags)
 flags['no-browser']=(
     {'NotebookApp' : {'open_browser' : False}},
     "Don't open the notebook in a browser after startup."
 )
 flags['no-mathjax']=(
     {'NotebookApp' : {'enable_mathjax' : False}},
     """Disable MathJax
     
     MathJax is the javascript library IPython uses to render math/LaTeX. It is
     very large, so you may want to disable it if you have a slow internet
     connection, or for offline use of the notebook.
     
     When disabled, equations etc. will appear as their untransformed TeX source.
     """
 )
 
 # Add notebook manager flags
 flags.update(boolean_flag('script', 'FileNotebookManager.save_script',
                'Auto-save a .py script everytime the .ipynb notebook is saved',
                'Do not auto-save .py scripts for every notebook'))
 
 # the flags that are specific to the frontend
 # these must be scrubbed before being passed to the kernel,
 # or it will raise an error on unrecognized flags
 notebook_flags = ['no-browser', 'no-mathjax', 'script', 'no-script']
 
 aliases = dict(kernel_aliases)
 
 aliases.update({
     'ip': 'NotebookApp.ip',
     'port': 'NotebookApp.port',
     'port-retries': 'NotebookApp.port_retries',
     'transport': 'KernelManager.transport',
     'keyfile': 'NotebookApp.keyfile',
     'certfile': 'NotebookApp.certfile',
     'notebook-dir': 'NotebookManager.notebook_dir',
     'browser': 'NotebookApp.browser',
 })
 
 # remove ipkernel flags that are singletons, and don't make sense in
 # multi-kernel evironment:
 aliases.pop('f', None)
 
 notebook_aliases = [u'port', u'port-retries', u'ip', u'keyfile', u'certfile',
-                    u'notebook-dir']
+                    u'notebook-dir', u'profile', u'profile-dir']
 
 #-----------------------------------------------------------------------------
 # NotebookApp
 #-----------------------------------------------------------------------------
 
 class NotebookApp(BaseIPythonApplication):
 
     name = 'ipython-notebook'
     
     description = """
         The IPython HTML Notebook.
         
         This launches a Tornado based HTML Notebook Server that serves up an
         HTML5/Javascript Notebook client.
     """
     examples = _examples
     
     classes = IPythonConsoleApp.classes + [MappingKernelManager, NotebookManager,
         FileNotebookManager]
     flags = Dict(flags)
     aliases = Dict(aliases)
 
     kernel_argv = List(Unicode)
 
     def _log_level_default(self):
         return logging.INFO
 
     def _log_format_default(self):
         """override default log format to include time"""
         return u"%(asctime)s.%(msecs).03d [%(name)s]%(highlevel)s %(message)s"
 
     # create requested profiles by default, if they don't exist:
     auto_create = Bool(True)
 
     # file to be opened in the notebook server
     file_to_run = Unicode('')
 
     # Network related information.
 
     ip = Unicode(LOCALHOST, config=True,
         help="The IP address the notebook server will listen on."
     )
 
     def _ip_changed(self, name, old, new):
         if new == u'*': self.ip = u''
 
     port = Integer(8888, config=True,
         help="The port the notebook server will listen on."
     )
     port_retries = Integer(50, config=True,
         help="The number of additional ports to try if the specified port is not available."
     )
 
     certfile = Unicode(u'', config=True, 
         help="""The full path to an SSL/TLS certificate file."""
     )
     
     keyfile = Unicode(u'', config=True, 
         help="""The full path to a private key file for usage with SSL/TLS."""
     )
     
     cookie_secret = Bytes(b'', config=True,
         help="""The random bytes used to secure cookies.
         By default this is a new random number every time you start the Notebook.
         Set it to a value in a config file to enable logins to persist across server sessions.
         
         Note: Cookie secrets should be kept private, do not share config files with
         cookie_secret stored in plaintext (you can read the value from a file).
         """
     )
     def _cookie_secret_default(self):
         return os.urandom(1024)
 
     password = Unicode(u'', config=True,
                       help="""Hashed password to use for web authentication.
 
                       To generate, type in a python/IPython shell:
 
                         from IPython.lib import passwd; passwd()
 
                       The string should be of the form type:salt:hashed-password.
                       """
     )
 
     open_browser = Bool(True, config=True,
                         help="""Whether to open in a browser after starting.
                         The specific browser used is platform dependent and
                         determined by the python standard library `webbrowser`
                         module, unless it is overridden using the --browser
                         (NotebookApp.browser) configuration option.
                         """)
 
     browser = Unicode(u'', config=True,
                       help="""Specify what command to use to invoke a web
                       browser when opening the notebook. If not specified, the
                       default browser will be determined by the `webbrowser`
                       standard library module, which allows setting of the
                       BROWSER environment variable to override it.
                       """)
     
     use_less = Bool(False, config=True,
                        help="""Wether to use Browser Side less-css parsing
                        instead of compiled css version in templates that allows
                        it. This is mainly convenient when working on the less
                        file to avoid a build step, or if user want to overwrite
                        some of the less variables without having to recompile
                        everything.
                        
                        You will need to install the less.js component in the static directory
                        either in the source tree or in your profile folder.
                        """)
 
     webapp_settings = Dict(config=True,
             help="Supply overrides for the tornado.web.Application that the "
                  "IPython notebook uses.")
     
     enable_mathjax = Bool(True, config=True,
         help="""Whether to enable MathJax for typesetting math/TeX
 
         MathJax is the javascript library IPython uses to render math/LaTeX. It is
         very large, so you may want to disable it if you have a slow internet
         connection, or for offline use of the notebook.
 
         When disabled, equations etc. will appear as their untransformed TeX source.
         """
     )
     def _enable_mathjax_changed(self, name, old, new):
         """set mathjax url to empty if mathjax is disabled"""
         if not new:
             self.mathjax_url = u''
 
     base_project_url = Unicode('/', config=True,
                                help='''The base URL for the notebook server.
 
                                Leading and trailing slashes can be omitted,
                                and will automatically be added.
                                ''')
     def _base_project_url_changed(self, name, old, new):
         if not new.startswith('/'):
             self.base_project_url = '/'+new
         elif not new.endswith('/'):
             self.base_project_url = new+'/'
 
     base_kernel_url = Unicode('/', config=True,
                                help='''The base URL for the kernel server
 
                                Leading and trailing slashes can be omitted,
                                and will automatically be added.
                                ''')
     def _base_kernel_url_changed(self, name, old, new):
         if not new.startswith('/'):
             self.base_kernel_url = '/'+new
         elif not new.endswith('/'):
             self.base_kernel_url = new+'/'
 
     websocket_url = Unicode("", config=True,
         help="""The base URL for the websocket server,
         if it differs from the HTTP server (hint: it almost certainly doesn't).
         
         Should be in the form of an HTTP origin: ws[s]://hostname[:port]
         """
     )
 
     extra_static_paths = List(Unicode, config=True,
         help="""Extra paths to search for serving static files.
         
         This allows adding javascript/css to be available from the notebook server machine,
         or overriding individual files in the IPython"""
     )
     def _extra_static_paths_default(self):
         return [os.path.join(self.profile_dir.location, 'static')]
     
     @property
     def static_file_path(self):
         """return extra paths + the default location"""
         return self.extra_static_paths + [DEFAULT_STATIC_FILES_PATH]
 
     mathjax_url = Unicode("", config=True,
         help="""The url for MathJax.js."""
     )
     def _mathjax_url_default(self):
         if not self.enable_mathjax:
             return u''
         static_url_prefix = self.webapp_settings.get("static_url_prefix",
                          url_path_join(self.base_project_url, "static")
         )
         try:
             mathjax = filefind(os.path.join('mathjax', 'MathJax.js'), self.static_file_path)
         except IOError:
             if self.certfile:
                 # HTTPS: load from Rackspace CDN, because SSL certificate requires it
                 base = u"https://c328740.ssl.cf1.rackcdn.com"
             else:
                 base = u"http://cdn.mathjax.org"
             
             url = base + u"/mathjax/latest/MathJax.js"
             self.log.info("Using MathJax from CDN: %s", url)
             return url
         else:
             self.log.info("Using local MathJax from %s" % mathjax)
             return url_path_join(static_url_prefix, u"mathjax/MathJax.js")
     
     def _mathjax_url_changed(self, name, old, new):
         if new and not self.enable_mathjax:
             # enable_mathjax=False overrides mathjax_url
             self.mathjax_url = u''
         else:
             self.log.info("Using MathJax: %s", new)
 
     notebook_manager_class = DottedObjectName('IPython.html.services.notebooks.filenbmanager.FileNotebookManager',
         config=True,
         help='The notebook manager class to use.')
 
     trust_xheaders = Bool(False, config=True,
         help=("Whether to trust or not X-Scheme/X-Forwarded-Proto and X-Real-Ip/X-Forwarded-For headers"
               "sent by the upstream reverse proxy. Neccesary if the proxy handles SSL")
     )
 
     def parse_command_line(self, argv=None):
         super(NotebookApp, self).parse_command_line(argv)
-        if argv is None:
-            argv = sys.argv[1:]
-
-        # Scrub frontend-specific flags
-        self.kernel_argv = swallow_argv(argv, notebook_aliases, notebook_flags)
-        # Kernel should inherit default config file from frontend
-        self.kernel_argv.append("--IPKernelApp.parent_appname='%s'" % self.name)
 
         if self.extra_args:
             f = os.path.abspath(self.extra_args[0])
             if os.path.isdir(f):
                 nbdir = f
             else:
                 self.file_to_run = f
                 nbdir = os.path.dirname(f)
             self.config.NotebookManager.notebook_dir = nbdir
 
+    def init_kernel_argv(self):
+        """construct the kernel arguments"""
+        # Scrub frontend-specific flags
+        self.kernel_argv = swallow_argv(self.argv, notebook_aliases, notebook_flags)
+        # Kernel should inherit default config file from frontend
+        self.kernel_argv.append("--IPKernelApp.parent_appname='%s'" % self.name)
+        # Kernel should get *absolute* path to profile directory
+        self.kernel_argv.extend(["--profile-dir", self.profile_dir.location])
+
     def init_configurables(self):
         # force Session default to be secure
         default_secure(self.config)
         self.kernel_manager = MappingKernelManager(
             parent=self, log=self.log, kernel_argv=self.kernel_argv,
             connection_dir = self.profile_dir.security_dir,
         )
         kls = import_item(self.notebook_manager_class)
         self.notebook_manager = kls(parent=self, log=self.log)
         self.notebook_manager.load_notebook_names()
         self.cluster_manager = ClusterManager(parent=self, log=self.log)
         self.cluster_manager.update_profiles()
 
     def init_logging(self):
         # This prevents double log messages because tornado use a root logger that
         # self.log is a child of. The logging module dipatches log messages to a log
         # and all of its ancenstors until propagate is set to False.
         self.log.propagate = False
         
         # hook up tornado 3's loggers to our app handlers
         for name in ('access', 'application', 'general'):
             logging.getLogger('tornado.%s' % name).handlers = self.log.handlers
     
     def init_webapp(self):
         """initialize tornado webapp and httpserver"""
         self.web_app = NotebookWebApplication(
             self, self.kernel_manager, self.notebook_manager, 
             self.cluster_manager, self.log,
             self.base_project_url, self.webapp_settings
         )
         if self.certfile:
             ssl_options = dict(certfile=self.certfile)
             if self.keyfile:
                 ssl_options['keyfile'] = self.keyfile
         else:
             ssl_options = None
         self.web_app.password = self.password
         self.http_server = httpserver.HTTPServer(self.web_app, ssl_options=ssl_options,
                                                  xheaders=self.trust_xheaders)
         if not self.ip:
             warning = "WARNING: The notebook server is listening on all IP addresses"
             if ssl_options is None:
                 self.log.critical(warning + " and not using encryption. This "
                     "is not recommended.")
             if not self.password:
                 self.log.critical(warning + " and not using authentication. "
                     "This is highly insecure and not recommended.")
         success = None
         for port in random_ports(self.port, self.port_retries+1):
             try:
                 self.http_server.listen(port, self.ip)
             except socket.error as e:
                 # XXX: remove the e.errno == -9 block when we require
                 # tornado >= 3.0
                 if e.errno == -9 and tornado.version_info[0] < 3:
                     # The flags passed to socket.getaddrinfo from
                     # tornado.netutils.bind_sockets can cause "gaierror:
                     # [Errno -9] Address family for hostname not supported"
                     # when the interface is not associated, for example.
                     # Changing the flags to exclude socket.AI_ADDRCONFIG does
                     # not cause this error, but the only way to do this is to
                     # monkeypatch socket to remove the AI_ADDRCONFIG attribute
                     saved_AI_ADDRCONFIG = socket.AI_ADDRCONFIG
                     self.log.warn('Monkeypatching socket to fix tornado bug')
                     del(socket.AI_ADDRCONFIG)
                     try:
                         # retry the tornado call without AI_ADDRCONFIG flags
                         self.http_server.listen(port, self.ip)
                     except socket.error as e2:
                         e = e2
                     else:
                         self.port = port
                         success = True
                         break
                     # restore the monekypatch
                     socket.AI_ADDRCONFIG = saved_AI_ADDRCONFIG
                 if e.errno != errno.EADDRINUSE:
                     raise
                 self.log.info('The port %i is already in use, trying another random port.' % port)
             else:
                 self.port = port
                 success = True
                 break
         if not success:
             self.log.critical('ERROR: the notebook server could not be started because '
                               'no available port could be found.')
             self.exit(1)
     
     def init_signal(self):
         if not sys.platform.startswith('win'):
             signal.signal(signal.SIGINT, self._handle_sigint)
         signal.signal(signal.SIGTERM, self._signal_stop)
         if hasattr(signal, 'SIGUSR1'):
             # Windows doesn't support SIGUSR1
             signal.signal(signal.SIGUSR1, self._signal_info)
         if hasattr(signal, 'SIGINFO'):
             # only on BSD-based systems
             signal.signal(signal.SIGINFO, self._signal_info)
     
     def _handle_sigint(self, sig, frame):
         """SIGINT handler spawns confirmation dialog"""
         # register more forceful signal handler for ^C^C case
         signal.signal(signal.SIGINT, self._signal_stop)
         # request confirmation dialog in bg thread, to avoid
         # blocking the App
         thread = threading.Thread(target=self._confirm_exit)
         thread.daemon = True
         thread.start()
     
     def _restore_sigint_handler(self):
         """callback for restoring original SIGINT handler"""
         signal.signal(signal.SIGINT, self._handle_sigint)
     
     def _confirm_exit(self):
         """confirm shutdown on ^C
         
         A second ^C, or answering 'y' within 5s will cause shutdown,
         otherwise original SIGINT handler will be restored.
         
         This doesn't work on Windows.
         """
         # FIXME: remove this delay when pyzmq dependency is >= 2.1.11
         time.sleep(0.1)
         info = self.log.info
         info('interrupted')
         print self.notebook_info()
         sys.stdout.write("Shutdown this notebook server (y/[n])? ")
         sys.stdout.flush()
         r,w,x = select.select([sys.stdin], [], [], 5)
         if r:
             line = sys.stdin.readline()
             if line.lower().startswith('y'):
                 self.log.critical("Shutdown confirmed")
                 ioloop.IOLoop.instance().stop()
                 return
         else:
             print "No answer for 5s:",
         print "resuming operation..."
         # no answer, or answer is no:
         # set it back to original SIGINT handler
         # use IOLoop.add_callback because signal.signal must be called
         # from main thread
         ioloop.IOLoop.instance().add_callback(self._restore_sigint_handler)
     
     def _signal_stop(self, sig, frame):
         self.log.critical("received signal %s, stopping", sig)
         ioloop.IOLoop.instance().stop()
 
     def _signal_info(self, sig, frame):
         print self.notebook_info()
     
     def init_components(self):
         """Check the components submodule, and warn if it's unclean"""
         status = submodule.check_submodule_status()
         if status == 'missing':
             self.log.warn("components submodule missing, running `git submodule update`")
             submodule.update_submodules(submodule.ipython_parent())
         elif status == 'unclean':
             self.log.warn("components submodule unclean, you may see 404s on static/components")
             self.log.warn("run `setup.py submodule` or `git submodule update` to update")
             
     
     @catch_config_error
     def initialize(self, argv=None):
         self.init_logging()
         super(NotebookApp, self).initialize(argv)
+        self.init_kernel_argv()
         self.init_configurables()
         self.init_components()
         self.init_webapp()
         self.init_signal()
 
     def cleanup_kernels(self):
         """Shutdown all kernels.
         
         The kernels will shutdown themselves when this process no longer exists,
         but explicit shutdown allows the KernelManagers to cleanup the connection files.
         """
         self.log.info('Shutting down kernels')
         self.kernel_manager.shutdown_all()
 
     def notebook_info(self):
         "Return the current working directory and the server url information"
         mgr_info = self.notebook_manager.info_string() + "\n"
         return mgr_info +"The IPython Notebook is running at: %s" % self._url
 
     def start(self):
         """ Start the IPython Notebook server app, after initialization
         
         This method takes no arguments so all configuration and initialization
         must be done prior to calling this method."""
         ip = self.ip if self.ip else '[all ip addresses on your system]'
         proto = 'https' if self.certfile else 'http'
         info = self.log.info
         self._url = "%s://%s:%i%s" % (proto, ip, self.port,
                                       self.base_project_url)
         for line in self.notebook_info().split("\n"):
             info(line)
         info("Use Control-C to stop this server and shut down all kernels (twice to skip confirmation).")
 
         if self.open_browser or self.file_to_run:
             ip = self.ip or LOCALHOST
             try:
                 browser = webbrowser.get(self.browser or None)
             except webbrowser.Error as e:
                 self.log.warn('No web browser found: %s.' % e)
                 browser = None
 
             if self.file_to_run:
                 name, _ = os.path.splitext(os.path.basename(self.file_to_run))
                 url = self.notebook_manager.rev_mapping.get(name, '')
             else:
                 url = ''
             if browser:
                 b = lambda : browser.open("%s://%s:%i%s%s" % (proto, ip,
                     self.port, self.base_project_url, url), new=2)
                 threading.Thread(target=b).start()
         try:
             ioloop.IOLoop.instance().start()
         except KeyboardInterrupt:
             info("Interrupted...")
         finally:
             self.cleanup_kernels()
     
 
 #-----------------------------------------------------------------------------
 # Main entry point
 #-----------------------------------------------------------------------------
 
 launch_new_instance = NotebookApp.launch_instance
 

IPython/parallel/apps/baseapp.py

@@ -1,277 +1,276
 # encoding: utf-8
 """
 The Base Application class for IPython.parallel apps
 
 Authors:
 
 * Brian Granger
 * Min RK
 
 """
 
 #-----------------------------------------------------------------------------
 #  Copyright (C) 2008-2011  The IPython Development Team
 #
 #  Distributed under the terms of the BSD License.  The full license is in
 #  the file COPYING, distributed as part of this software.
 #-----------------------------------------------------------------------------
 
 #-----------------------------------------------------------------------------
 # Imports
 #-----------------------------------------------------------------------------
 
 from __future__ import with_statement
 
 import os
 import logging
 import re
 import sys
 
 from subprocess import Popen, PIPE
 
 from IPython.config.application import catch_config_error, LevelFormatter
 from IPython.core import release
 from IPython.core.crashhandler import CrashHandler
 from IPython.core.application import (
     BaseIPythonApplication,
     base_aliases as base_ip_aliases,
     base_flags as base_ip_flags
 )
 from IPython.utils.path import expand_path
 
 from IPython.utils.traitlets import Unicode, Bool, Instance, Dict, List
 
 #-----------------------------------------------------------------------------
 # Module errors
 #-----------------------------------------------------------------------------
 
 class PIDFileError(Exception):
     pass
 
 
 #-----------------------------------------------------------------------------
 # Crash handler for this application
 #-----------------------------------------------------------------------------
 
 class ParallelCrashHandler(CrashHandler):
     """sys.excepthook for IPython itself, leaves a detailed report on disk."""
 
     def __init__(self, app):
         contact_name = release.authors['Min'][0]
         contact_email = release.author_email
         bug_tracker = 'https://github.com/ipython/ipython/issues'
         super(ParallelCrashHandler,self).__init__(
             app, contact_name, contact_email, bug_tracker
         )
 
 
 #-----------------------------------------------------------------------------
 # Main application
 #-----------------------------------------------------------------------------
 base_aliases = {}
 base_aliases.update(base_ip_aliases)
 base_aliases.update({
-    'profile-dir' : 'ProfileDir.location',
     'work-dir' : 'BaseParallelApplication.work_dir',
     'log-to-file' : 'BaseParallelApplication.log_to_file',
     'clean-logs' : 'BaseParallelApplication.clean_logs',
     'log-url' : 'BaseParallelApplication.log_url',
     'cluster-id' : 'BaseParallelApplication.cluster_id',
 })
 
 base_flags = {
     'log-to-file' : (
         {'BaseParallelApplication' : {'log_to_file' : True}},
         "send log output to a file"
     )
 }
 base_flags.update(base_ip_flags)
 
 class BaseParallelApplication(BaseIPythonApplication):
     """The base Application for IPython.parallel apps
     
     Principle extensions to BaseIPyythonApplication:
     
     * work_dir
     * remote logging via pyzmq
     * IOLoop instance
     """
 
     crash_handler_class = ParallelCrashHandler
     
     def _log_level_default(self):
         # temporarily override default_log_level to INFO
         return logging.INFO
     
     def _log_format_default(self):
         """override default log format to include time"""
         return u"%(asctime)s.%(msecs).03d [%(name)s]%(highlevel)s %(message)s"
 
     work_dir = Unicode(os.getcwdu(), config=True,
         help='Set the working dir for the process.'
     )
     def _work_dir_changed(self, name, old, new):
         self.work_dir = unicode(expand_path(new))
 
     log_to_file = Bool(config=True,
         help="whether to log to a file")
 
     clean_logs = Bool(False, config=True,
         help="whether to cleanup old logfiles before starting")
 
     log_url = Unicode('', config=True,
         help="The ZMQ URL of the iplogger to aggregate logging.")
 
     cluster_id = Unicode('', config=True,
         help="""String id to add to runtime files, to prevent name collisions when
         using multiple clusters with a single profile simultaneously.
         
         When set, files will be named like: 'ipcontroller-<cluster_id>-engine.json'
         
         Since this is text inserted into filenames, typical recommendations apply:
         Simple character strings are ideal, and spaces are not recommended (but should
         generally work).
         """
     )
     def _cluster_id_changed(self, name, old, new):
         self.name = self.__class__.name
         if new:
             self.name += '-%s'%new
     
     def _config_files_default(self):
         return ['ipcontroller_config.py', 'ipengine_config.py', 'ipcluster_config.py']
     
     loop = Instance('zmq.eventloop.ioloop.IOLoop')
     def _loop_default(self):
         from zmq.eventloop.ioloop import IOLoop
         return IOLoop.instance()
 
     aliases = Dict(base_aliases)
     flags = Dict(base_flags)
     
     @catch_config_error
     def initialize(self, argv=None):
         """initialize the app"""
         super(BaseParallelApplication, self).initialize(argv)
         self.to_work_dir()
         self.reinit_logging()
         
     def to_work_dir(self):
         wd = self.work_dir
         if unicode(wd) != os.getcwdu():
             os.chdir(wd)
             self.log.info("Changing to working dir: %s" % wd)
         # This is the working dir by now.
         sys.path.insert(0, '')
 
     def reinit_logging(self):
         # Remove old log files
         log_dir = self.profile_dir.log_dir
         if self.clean_logs:
             for f in os.listdir(log_dir):
                 if re.match(r'%s-\d+\.(log|err|out)' % self.name, f):
                     try:
                         os.remove(os.path.join(log_dir, f))
                     except (OSError, IOError):
                         # probably just conflict from sibling process
                         # already removing it
                         pass
         if self.log_to_file:
             # Start logging to the new log file
             log_filename = self.name + u'-' + str(os.getpid()) + u'.log'
             logfile = os.path.join(log_dir, log_filename)
             open_log_file = open(logfile, 'w')
         else:
             open_log_file = None
         if open_log_file is not None:
             while self.log.handlers:
                 self.log.removeHandler(self.log.handlers[0])
             self._log_handler = logging.StreamHandler(open_log_file)
             self.log.addHandler(self._log_handler)
         else:
             self._log_handler = self.log.handlers[0]
         # Add timestamps to log format:
         self._log_formatter = LevelFormatter(self.log_format,
                                                 datefmt=self.log_datefmt)
         self._log_handler.setFormatter(self._log_formatter)
         # do not propagate log messages to root logger
         # ipcluster app will sometimes print duplicate messages during shutdown
         # if this is 1 (default):
         self.log.propagate = False
 
     def write_pid_file(self, overwrite=False):
         """Create a .pid file in the pid_dir with my pid.
 
         This must be called after pre_construct, which sets `self.pid_dir`.
         This raises :exc:`PIDFileError` if the pid file exists already.
         """
         pid_file = os.path.join(self.profile_dir.pid_dir, self.name + u'.pid')
         if os.path.isfile(pid_file):
             pid = self.get_pid_from_file()
             if not overwrite:
                 raise PIDFileError(
                     'The pid file [%s] already exists. \nThis could mean that this '
                     'server is already running with [pid=%s].' % (pid_file, pid)
                 )
         with open(pid_file, 'w') as f:
             self.log.info("Creating pid file: %s" % pid_file)
             f.write(repr(os.getpid())+'\n')
 
     def remove_pid_file(self):
         """Remove the pid file.
 
         This should be called at shutdown by registering a callback with
         :func:`reactor.addSystemEventTrigger`. This needs to return
         ``None``.
         """
         pid_file = os.path.join(self.profile_dir.pid_dir, self.name + u'.pid')
         if os.path.isfile(pid_file):
             try:
                 self.log.info("Removing pid file: %s" % pid_file)
                 os.remove(pid_file)
             except:
                 self.log.warn("Error removing the pid file: %s" % pid_file)
 
     def get_pid_from_file(self):
         """Get the pid from the pid file.
 
         If the  pid file doesn't exist a :exc:`PIDFileError` is raised.
         """
         pid_file = os.path.join(self.profile_dir.pid_dir, self.name + u'.pid')
         if os.path.isfile(pid_file):
             with open(pid_file, 'r') as f:
                 s = f.read().strip()
                 try:
                     pid = int(s)
                 except:
                     raise PIDFileError("invalid pid file: %s (contents: %r)"%(pid_file, s))
                 return pid
         else:
             raise PIDFileError('pid file not found: %s' % pid_file)
     
     def check_pid(self, pid):
         if os.name == 'nt':
             try:
                 import ctypes
                 # returns 0 if no such process (of ours) exists
                 # positive int otherwise
                 p = ctypes.windll.kernel32.OpenProcess(1,0,pid)
             except Exception:
                 self.log.warn(
                     "Could not determine whether pid %i is running via `OpenProcess`. "
                     " Making the likely assumption that it is."%pid
                 )
                 return True
             return bool(p)
         else:
             try:
                 p = Popen(['ps','x'], stdout=PIPE, stderr=PIPE)
                 output,_ = p.communicate()
             except OSError:
                 self.log.warn(
                     "Could not determine whether pid %i is running via `ps x`. "
                     " Making the likely assumption that it is."%pid
                 )
                 return True
             pids = map(int, re.findall(r'^\W*\d+', output, re.MULTILINE))
             return pid in pids