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1 | 1 | # encoding: utf-8 |
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2 | 2 | """ |
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3 | 3 | Facilities for launching IPython processes asynchronously. |
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4 | 4 | |
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5 | 5 | Authors: |
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6 | 6 | |
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7 | 7 | * Brian Granger |
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8 | 8 | * MinRK |
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9 | 9 | """ |
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10 | 10 | |
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11 | 11 | #----------------------------------------------------------------------------- |
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12 | 12 | # Copyright (C) 2008-2011 The IPython Development Team |
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13 | 13 | # |
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14 | 14 | # Distributed under the terms of the BSD License. The full license is in |
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15 | 15 | # the file COPYING, distributed as part of this software. |
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16 | 16 | #----------------------------------------------------------------------------- |
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17 | 17 | |
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18 | 18 | #----------------------------------------------------------------------------- |
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19 | 19 | # Imports |
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20 | 20 | #----------------------------------------------------------------------------- |
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21 | 21 | |
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22 | 22 | import copy |
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23 | 23 | import logging |
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24 | 24 | import os |
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25 | 25 | import re |
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26 | 26 | import stat |
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27 | 27 | import time |
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28 | 28 | |
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29 | 29 | # signal imports, handling various platforms, versions |
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30 | 30 | |
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31 | 31 | from signal import SIGINT, SIGTERM |
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32 | 32 | try: |
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33 | 33 | from signal import SIGKILL |
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34 | 34 | except ImportError: |
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35 | 35 | # Windows |
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36 | 36 | SIGKILL=SIGTERM |
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37 | 37 | |
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38 | 38 | try: |
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39 | 39 | # Windows >= 2.7, 3.2 |
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40 | 40 | from signal import CTRL_C_EVENT as SIGINT |
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41 | 41 | except ImportError: |
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42 | 42 | pass |
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43 | 43 | |
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44 | 44 | from subprocess import Popen, PIPE, STDOUT |
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45 | 45 | try: |
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46 | 46 | from subprocess import check_output |
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47 | 47 | except ImportError: |
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48 | 48 | # pre-2.7, define check_output with Popen |
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49 | 49 | def check_output(*args, **kwargs): |
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50 | 50 | kwargs.update(dict(stdout=PIPE)) |
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51 | 51 | p = Popen(*args, **kwargs) |
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52 | 52 | out,err = p.communicate() |
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53 | 53 | return out |
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54 | 54 | |
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55 | 55 | from zmq.eventloop import ioloop |
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56 | 56 | |
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57 | 57 | from IPython.config.application import Application |
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58 | 58 | from IPython.config.configurable import LoggingConfigurable |
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59 | 59 | from IPython.utils.text import EvalFormatter |
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60 | 60 | from IPython.utils.traitlets import ( |
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61 | 61 | Any, Integer, CFloat, List, Unicode, Dict, Instance, HasTraits, |
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62 | 62 | ) |
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63 | from IPython.utils.path import get_ipython_module_path | |
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63 | from IPython.utils.path import get_ipython_module_path, get_home_dir | |
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64 | 64 | from IPython.utils.process import find_cmd, pycmd2argv, FindCmdError |
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65 | 65 | |
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66 | 66 | from .win32support import forward_read_events |
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67 | 67 | |
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68 | 68 | from .winhpcjob import IPControllerTask, IPEngineTask, IPControllerJob, IPEngineSetJob |
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69 | 69 | |
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70 | 70 | WINDOWS = os.name == 'nt' |
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71 | 71 | |
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72 | 72 | #----------------------------------------------------------------------------- |
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73 | 73 | # Paths to the kernel apps |
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74 | 74 | #----------------------------------------------------------------------------- |
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75 | 75 | |
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76 | 76 | |
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77 | 77 | ipcluster_cmd_argv = pycmd2argv(get_ipython_module_path( |
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78 | 78 | 'IPython.parallel.apps.ipclusterapp' |
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79 | 79 | )) |
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80 | 80 | |
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81 | 81 | ipengine_cmd_argv = pycmd2argv(get_ipython_module_path( |
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82 | 82 | 'IPython.parallel.apps.ipengineapp' |
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83 | 83 | )) |
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84 | 84 | |
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85 | 85 | ipcontroller_cmd_argv = pycmd2argv(get_ipython_module_path( |
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86 | 86 | 'IPython.parallel.apps.ipcontrollerapp' |
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87 | 87 | )) |
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88 | 88 | |
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89 | 89 | #----------------------------------------------------------------------------- |
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90 | 90 | # Base launchers and errors |
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91 | 91 | #----------------------------------------------------------------------------- |
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92 | 92 | |
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93 | 93 | |
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94 | 94 | class LauncherError(Exception): |
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95 | 95 | pass |
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96 | 96 | |
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97 | 97 | |
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98 | 98 | class ProcessStateError(LauncherError): |
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99 | 99 | pass |
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100 | 100 | |
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101 | 101 | |
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102 | 102 | class UnknownStatus(LauncherError): |
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103 | 103 | pass |
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104 | 104 | |
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105 | 105 | |
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106 | 106 | class BaseLauncher(LoggingConfigurable): |
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107 | 107 | """An asbtraction for starting, stopping and signaling a process.""" |
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108 | 108 | |
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109 | 109 | # In all of the launchers, the work_dir is where child processes will be |
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110 | 110 | # run. This will usually be the profile_dir, but may not be. any work_dir |
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111 | 111 | # passed into the __init__ method will override the config value. |
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112 | 112 | # This should not be used to set the work_dir for the actual engine |
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113 | 113 | # and controller. Instead, use their own config files or the |
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114 | 114 | # controller_args, engine_args attributes of the launchers to add |
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115 | 115 | # the work_dir option. |
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116 | 116 | work_dir = Unicode(u'.') |
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117 | 117 | loop = Instance('zmq.eventloop.ioloop.IOLoop') |
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118 | 118 | |
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119 | 119 | start_data = Any() |
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120 | 120 | stop_data = Any() |
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121 | 121 | |
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122 | 122 | def _loop_default(self): |
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123 | 123 | return ioloop.IOLoop.instance() |
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124 | 124 | |
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125 | 125 | def __init__(self, work_dir=u'.', config=None, **kwargs): |
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126 | 126 | super(BaseLauncher, self).__init__(work_dir=work_dir, config=config, **kwargs) |
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127 | 127 | self.state = 'before' # can be before, running, after |
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128 | 128 | self.stop_callbacks = [] |
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129 | 129 | self.start_data = None |
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130 | 130 | self.stop_data = None |
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131 | 131 | |
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132 | 132 | @property |
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133 | 133 | def args(self): |
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134 | 134 | """A list of cmd and args that will be used to start the process. |
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135 | 135 | |
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136 | 136 | This is what is passed to :func:`spawnProcess` and the first element |
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137 | 137 | will be the process name. |
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138 | 138 | """ |
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139 | 139 | return self.find_args() |
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140 | 140 | |
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141 | 141 | def find_args(self): |
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142 | 142 | """The ``.args`` property calls this to find the args list. |
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143 | 143 | |
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144 | 144 | Subcommand should implement this to construct the cmd and args. |
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145 | 145 | """ |
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146 | 146 | raise NotImplementedError('find_args must be implemented in a subclass') |
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147 | 147 | |
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148 | 148 | @property |
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149 | 149 | def arg_str(self): |
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150 | 150 | """The string form of the program arguments.""" |
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151 | 151 | return ' '.join(self.args) |
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152 | 152 | |
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153 | 153 | @property |
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154 | 154 | def running(self): |
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155 | 155 | """Am I running.""" |
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156 | 156 | if self.state == 'running': |
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157 | 157 | return True |
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158 | 158 | else: |
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159 | 159 | return False |
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160 | 160 | |
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161 | 161 | def start(self): |
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162 | 162 | """Start the process.""" |
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163 | 163 | raise NotImplementedError('start must be implemented in a subclass') |
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164 | 164 | |
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165 | 165 | def stop(self): |
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166 | 166 | """Stop the process and notify observers of stopping. |
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167 | 167 | |
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168 | 168 | This method will return None immediately. |
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169 | 169 | To observe the actual process stopping, see :meth:`on_stop`. |
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170 | 170 | """ |
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171 | 171 | raise NotImplementedError('stop must be implemented in a subclass') |
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172 | 172 | |
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173 | 173 | def on_stop(self, f): |
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174 | 174 | """Register a callback to be called with this Launcher's stop_data |
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175 | 175 | when the process actually finishes. |
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176 | 176 | """ |
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177 | 177 | if self.state=='after': |
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178 | 178 | return f(self.stop_data) |
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179 | 179 | else: |
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180 | 180 | self.stop_callbacks.append(f) |
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181 | 181 | |
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182 | 182 | def notify_start(self, data): |
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183 | 183 | """Call this to trigger startup actions. |
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184 | 184 | |
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185 | 185 | This logs the process startup and sets the state to 'running'. It is |
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186 | 186 | a pass-through so it can be used as a callback. |
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187 | 187 | """ |
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188 | 188 | |
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189 | 189 | self.log.debug('Process %r started: %r', self.args[0], data) |
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190 | 190 | self.start_data = data |
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191 | 191 | self.state = 'running' |
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192 | 192 | return data |
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193 | 193 | |
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194 | 194 | def notify_stop(self, data): |
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195 | 195 | """Call this to trigger process stop actions. |
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196 | 196 | |
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197 | 197 | This logs the process stopping and sets the state to 'after'. Call |
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198 | 198 | this to trigger callbacks registered via :meth:`on_stop`.""" |
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199 | 199 | |
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200 | 200 | self.log.debug('Process %r stopped: %r', self.args[0], data) |
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201 | 201 | self.stop_data = data |
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202 | 202 | self.state = 'after' |
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203 | 203 | for i in range(len(self.stop_callbacks)): |
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204 | 204 | d = self.stop_callbacks.pop() |
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205 | 205 | d(data) |
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206 | 206 | return data |
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207 | 207 | |
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208 | 208 | def signal(self, sig): |
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209 | 209 | """Signal the process. |
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210 | 210 | |
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211 | 211 | Parameters |
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212 | 212 | ---------- |
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213 | 213 | sig : str or int |
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214 | 214 | 'KILL', 'INT', etc., or any signal number |
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215 | 215 | """ |
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216 | 216 | raise NotImplementedError('signal must be implemented in a subclass') |
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217 | 217 | |
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218 | 218 | class ClusterAppMixin(HasTraits): |
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219 | 219 | """MixIn for cluster args as traits""" |
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220 | cluster_args = List([]) | |
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221 | 220 | profile_dir=Unicode('') |
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222 | 221 | cluster_id=Unicode('') |
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223 | def _profile_dir_changed(self, name, old, new): | |
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224 | self.cluster_args = [] | |
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225 | if self.profile_dir: | |
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226 | self.cluster_args.extend(['--profile-dir', self.profile_dir]) | |
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227 | if self.cluster_id: | |
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228 | self.cluster_args.extend(['--cluster-id', self.cluster_id]) | |
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229 | _cluster_id_changed = _profile_dir_changed | |
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222 | ||
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223 | @property | |
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224 | def cluster_args(self): | |
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225 | return ['--profile-dir', self.profile_dir, '--cluster-id', self.cluster_id] | |
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230 | 226 | |
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231 | 227 | class ControllerMixin(ClusterAppMixin): |
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232 | 228 | controller_cmd = List(ipcontroller_cmd_argv, config=True, |
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233 | 229 | help="""Popen command to launch ipcontroller.""") |
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234 | 230 | # Command line arguments to ipcontroller. |
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235 | 231 | controller_args = List(['--log-to-file','--log-level=%i' % logging.INFO], config=True, |
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236 | 232 | help="""command-line args to pass to ipcontroller""") |
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237 | 233 | |
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238 | 234 | class EngineMixin(ClusterAppMixin): |
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239 | 235 | engine_cmd = List(ipengine_cmd_argv, config=True, |
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240 | 236 | help="""command to launch the Engine.""") |
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241 | 237 | # Command line arguments for ipengine. |
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242 | 238 | engine_args = List(['--log-to-file','--log-level=%i' % logging.INFO], config=True, |
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243 | 239 | help="command-line arguments to pass to ipengine" |
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244 | 240 | ) |
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245 | 241 | |
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242 | ||
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246 | 243 | #----------------------------------------------------------------------------- |
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247 | 244 | # Local process launchers |
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248 | 245 | #----------------------------------------------------------------------------- |
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249 | 246 | |
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250 | 247 | |
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251 | 248 | class LocalProcessLauncher(BaseLauncher): |
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252 | 249 | """Start and stop an external process in an asynchronous manner. |
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253 | 250 | |
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254 | 251 | This will launch the external process with a working directory of |
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255 | 252 | ``self.work_dir``. |
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256 | 253 | """ |
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257 | 254 | |
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258 | 255 | # This is used to to construct self.args, which is passed to |
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259 | 256 | # spawnProcess. |
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260 | 257 | cmd_and_args = List([]) |
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261 | 258 | poll_frequency = Integer(100) # in ms |
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262 | 259 | |
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263 | 260 | def __init__(self, work_dir=u'.', config=None, **kwargs): |
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264 | 261 | super(LocalProcessLauncher, self).__init__( |
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265 | 262 | work_dir=work_dir, config=config, **kwargs |
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266 | 263 | ) |
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267 | 264 | self.process = None |
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268 | 265 | self.poller = None |
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269 | 266 | |
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270 | 267 | def find_args(self): |
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271 | 268 | return self.cmd_and_args |
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272 | 269 | |
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273 | 270 | def start(self): |
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274 | 271 | self.log.debug("Starting %s: %r", self.__class__.__name__, self.args) |
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275 | 272 | if self.state == 'before': |
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276 | 273 | self.process = Popen(self.args, |
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277 | 274 | stdout=PIPE,stderr=PIPE,stdin=PIPE, |
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278 | 275 | env=os.environ, |
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279 | 276 | cwd=self.work_dir |
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280 | 277 | ) |
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281 | 278 | if WINDOWS: |
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282 | 279 | self.stdout = forward_read_events(self.process.stdout) |
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283 | 280 | self.stderr = forward_read_events(self.process.stderr) |
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284 | 281 | else: |
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285 | 282 | self.stdout = self.process.stdout.fileno() |
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286 | 283 | self.stderr = self.process.stderr.fileno() |
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287 | 284 | self.loop.add_handler(self.stdout, self.handle_stdout, self.loop.READ) |
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288 | 285 | self.loop.add_handler(self.stderr, self.handle_stderr, self.loop.READ) |
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289 | 286 | self.poller = ioloop.PeriodicCallback(self.poll, self.poll_frequency, self.loop) |
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290 | 287 | self.poller.start() |
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291 | 288 | self.notify_start(self.process.pid) |
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292 | 289 | else: |
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293 | 290 | s = 'The process was already started and has state: %r' % self.state |
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294 | 291 | raise ProcessStateError(s) |
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295 | 292 | |
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296 | 293 | def stop(self): |
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297 | 294 | return self.interrupt_then_kill() |
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298 | 295 | |
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299 | 296 | def signal(self, sig): |
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300 | 297 | if self.state == 'running': |
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301 | 298 | if WINDOWS and sig != SIGINT: |
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302 | 299 | # use Windows tree-kill for better child cleanup |
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303 | 300 | check_output(['taskkill', '-pid', str(self.process.pid), '-t', '-f']) |
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304 | 301 | else: |
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305 | 302 | self.process.send_signal(sig) |
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306 | 303 | |
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307 | 304 | def interrupt_then_kill(self, delay=2.0): |
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308 | 305 | """Send INT, wait a delay and then send KILL.""" |
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309 | 306 | try: |
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310 | 307 | self.signal(SIGINT) |
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311 | 308 | except Exception: |
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312 | 309 | self.log.debug("interrupt failed") |
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313 | 310 | pass |
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314 | 311 | self.killer = ioloop.DelayedCallback(lambda : self.signal(SIGKILL), delay*1000, self.loop) |
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315 | 312 | self.killer.start() |
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316 | 313 | |
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317 | 314 | # callbacks, etc: |
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318 | 315 | |
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319 | 316 | def handle_stdout(self, fd, events): |
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320 | 317 | if WINDOWS: |
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321 | 318 | line = self.stdout.recv() |
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322 | 319 | else: |
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323 | 320 | line = self.process.stdout.readline() |
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324 | 321 | # a stopped process will be readable but return empty strings |
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325 | 322 | if line: |
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326 | 323 | self.log.debug(line[:-1]) |
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327 | 324 | else: |
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328 | 325 | self.poll() |
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329 | 326 | |
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330 | 327 | def handle_stderr(self, fd, events): |
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331 | 328 | if WINDOWS: |
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332 | 329 | line = self.stderr.recv() |
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333 | 330 | else: |
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334 | 331 | line = self.process.stderr.readline() |
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335 | 332 | # a stopped process will be readable but return empty strings |
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336 | 333 | if line: |
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337 | 334 | self.log.debug(line[:-1]) |
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338 | 335 | else: |
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339 | 336 | self.poll() |
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340 | 337 | |
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341 | 338 | def poll(self): |
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342 | 339 | status = self.process.poll() |
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343 | 340 | if status is not None: |
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344 | 341 | self.poller.stop() |
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345 | 342 | self.loop.remove_handler(self.stdout) |
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346 | 343 | self.loop.remove_handler(self.stderr) |
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347 | 344 | self.notify_stop(dict(exit_code=status, pid=self.process.pid)) |
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348 | 345 | return status |
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349 | 346 | |
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350 | 347 | class LocalControllerLauncher(LocalProcessLauncher, ControllerMixin): |
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351 | 348 | """Launch a controller as a regular external process.""" |
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352 | 349 | |
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353 | 350 | def find_args(self): |
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354 | 351 | return self.controller_cmd + self.cluster_args + self.controller_args |
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355 | 352 | |
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356 | 353 | def start(self): |
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357 | 354 | """Start the controller by profile_dir.""" |
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358 | 355 | return super(LocalControllerLauncher, self).start() |
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359 | 356 | |
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360 | 357 | |
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361 | 358 | class LocalEngineLauncher(LocalProcessLauncher, EngineMixin): |
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362 | 359 | """Launch a single engine as a regular externall process.""" |
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363 | 360 | |
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364 | 361 | def find_args(self): |
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365 | 362 | return self.engine_cmd + self.cluster_args + self.engine_args |
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366 | 363 | |
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367 | 364 | |
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368 | 365 | class LocalEngineSetLauncher(LocalEngineLauncher): |
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369 | 366 | """Launch a set of engines as regular external processes.""" |
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370 | 367 | |
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371 | 368 | delay = CFloat(0.1, config=True, |
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372 | 369 | help="""delay (in seconds) between starting each engine after the first. |
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373 | 370 | This can help force the engines to get their ids in order, or limit |
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374 | 371 | process flood when starting many engines.""" |
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375 | 372 | ) |
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376 | 373 | |
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377 | 374 | # launcher class |
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378 | 375 | launcher_class = LocalEngineLauncher |
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379 | 376 | |
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380 | 377 | launchers = Dict() |
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381 | 378 | stop_data = Dict() |
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382 | 379 | |
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383 | 380 | def __init__(self, work_dir=u'.', config=None, **kwargs): |
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384 | 381 | super(LocalEngineSetLauncher, self).__init__( |
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385 | 382 | work_dir=work_dir, config=config, **kwargs |
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386 | 383 | ) |
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387 | 384 | self.stop_data = {} |
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388 | 385 | |
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389 | 386 | def start(self, n): |
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390 | 387 | """Start n engines by profile or profile_dir.""" |
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391 | 388 | dlist = [] |
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392 | 389 | for i in range(n): |
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393 | 390 | if i > 0: |
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394 | 391 | time.sleep(self.delay) |
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395 | 392 | el = self.launcher_class(work_dir=self.work_dir, config=self.config, log=self.log, |
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396 | 393 | profile_dir=self.profile_dir, cluster_id=self.cluster_id, |
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397 | 394 | ) |
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398 | 395 | |
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399 | 396 | # Copy the engine args over to each engine launcher. |
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400 | 397 | el.engine_cmd = copy.deepcopy(self.engine_cmd) |
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401 | 398 | el.engine_args = copy.deepcopy(self.engine_args) |
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402 | 399 | el.on_stop(self._notice_engine_stopped) |
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403 | 400 | d = el.start() |
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404 | 401 | self.launchers[i] = el |
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405 | 402 | dlist.append(d) |
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406 | 403 | self.notify_start(dlist) |
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407 | 404 | return dlist |
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408 | 405 | |
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409 | 406 | def find_args(self): |
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410 | 407 | return ['engine set'] |
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411 | 408 | |
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412 | 409 | def signal(self, sig): |
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413 | 410 | dlist = [] |
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414 | 411 | for el in self.launchers.itervalues(): |
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415 | 412 | d = el.signal(sig) |
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416 | 413 | dlist.append(d) |
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417 | 414 | return dlist |
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418 | 415 | |
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419 | 416 | def interrupt_then_kill(self, delay=1.0): |
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420 | 417 | dlist = [] |
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421 | 418 | for el in self.launchers.itervalues(): |
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422 | 419 | d = el.interrupt_then_kill(delay) |
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423 | 420 | dlist.append(d) |
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424 | 421 | return dlist |
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425 | 422 | |
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426 | 423 | def stop(self): |
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427 | 424 | return self.interrupt_then_kill() |
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428 | 425 | |
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429 | 426 | def _notice_engine_stopped(self, data): |
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430 | 427 | pid = data['pid'] |
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431 | 428 | for idx,el in self.launchers.iteritems(): |
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432 | 429 | if el.process.pid == pid: |
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433 | 430 | break |
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434 | 431 | self.launchers.pop(idx) |
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435 | 432 | self.stop_data[idx] = data |
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436 | 433 | if not self.launchers: |
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437 | 434 | self.notify_stop(self.stop_data) |
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438 | 435 | |
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439 | 436 | |
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440 | 437 | #----------------------------------------------------------------------------- |
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441 | 438 | # MPI launchers |
|
442 | 439 | #----------------------------------------------------------------------------- |
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443 | 440 | |
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444 | 441 | |
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445 | 442 | class MPILauncher(LocalProcessLauncher): |
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446 | 443 | """Launch an external process using mpiexec.""" |
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447 | 444 | |
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448 | 445 | mpi_cmd = List(['mpiexec'], config=True, |
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449 | 446 | help="The mpiexec command to use in starting the process." |
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450 | 447 | ) |
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451 | 448 | mpi_args = List([], config=True, |
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452 | 449 | help="The command line arguments to pass to mpiexec." |
|
453 | 450 | ) |
|
454 | 451 | program = List(['date'], |
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455 | 452 | help="The program to start via mpiexec.") |
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456 | 453 | program_args = List([], |
|
457 | 454 | help="The command line argument to the program." |
|
458 | 455 | ) |
|
459 | 456 | n = Integer(1) |
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460 | 457 | |
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461 | 458 | def __init__(self, *args, **kwargs): |
|
462 | 459 | # deprecation for old MPIExec names: |
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463 | 460 | config = kwargs.get('config', {}) |
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464 | 461 | for oldname in ('MPIExecLauncher', 'MPIExecControllerLauncher', 'MPIExecEngineSetLauncher'): |
|
465 | 462 | deprecated = config.get(oldname) |
|
466 | 463 | if deprecated: |
|
467 | 464 | newname = oldname.replace('MPIExec', 'MPI') |
|
468 | 465 | config[newname].update(deprecated) |
|
469 | 466 | self.log.warn("WARNING: %s name has been deprecated, use %s", oldname, newname) |
|
470 | 467 | |
|
471 | 468 | super(MPILauncher, self).__init__(*args, **kwargs) |
|
472 | 469 | |
|
473 | 470 | def find_args(self): |
|
474 | 471 | """Build self.args using all the fields.""" |
|
475 | 472 | return self.mpi_cmd + ['-n', str(self.n)] + self.mpi_args + \ |
|
476 | 473 | self.program + self.program_args |
|
477 | 474 | |
|
478 | 475 | def start(self, n): |
|
479 | 476 | """Start n instances of the program using mpiexec.""" |
|
480 | 477 | self.n = n |
|
481 | 478 | return super(MPILauncher, self).start() |
|
482 | 479 | |
|
483 | 480 | |
|
484 | 481 | class MPIControllerLauncher(MPILauncher, ControllerMixin): |
|
485 | 482 | """Launch a controller using mpiexec.""" |
|
486 | 483 | |
|
487 | 484 | # alias back to *non-configurable* program[_args] for use in find_args() |
|
488 | 485 | # this way all Controller/EngineSetLaunchers have the same form, rather |
|
489 | 486 | # than *some* having `program_args` and others `controller_args` |
|
490 | 487 | @property |
|
491 | 488 | def program(self): |
|
492 | 489 | return self.controller_cmd |
|
493 | 490 | |
|
494 | 491 | @property |
|
495 | 492 | def program_args(self): |
|
496 | 493 | return self.cluster_args + self.controller_args |
|
497 | 494 | |
|
498 | 495 | def start(self): |
|
499 | 496 | """Start the controller by profile_dir.""" |
|
500 | 497 | return super(MPIControllerLauncher, self).start(1) |
|
501 | 498 | |
|
502 | 499 | |
|
503 | 500 | class MPIEngineSetLauncher(MPILauncher, EngineMixin): |
|
504 | 501 | """Launch engines using mpiexec""" |
|
505 | 502 | |
|
506 | 503 | # alias back to *non-configurable* program[_args] for use in find_args() |
|
507 | 504 | # this way all Controller/EngineSetLaunchers have the same form, rather |
|
508 | 505 | # than *some* having `program_args` and others `controller_args` |
|
509 | 506 | @property |
|
510 | 507 | def program(self): |
|
511 | 508 | return self.engine_cmd |
|
512 | 509 | |
|
513 | 510 | @property |
|
514 | 511 | def program_args(self): |
|
515 | 512 | return self.cluster_args + self.engine_args |
|
516 | 513 | |
|
517 | 514 | def start(self, n): |
|
518 | 515 | """Start n engines by profile or profile_dir.""" |
|
519 | 516 | self.n = n |
|
520 | 517 | return super(MPIEngineSetLauncher, self).start(n) |
|
521 | 518 | |
|
522 | 519 | # deprecated MPIExec names |
|
523 | 520 | class DeprecatedMPILauncher(object): |
|
524 | 521 | def warn(self): |
|
525 | 522 | oldname = self.__class__.__name__ |
|
526 | 523 | newname = oldname.replace('MPIExec', 'MPI') |
|
527 | 524 | self.log.warn("WARNING: %s name is deprecated, use %s", oldname, newname) |
|
528 | 525 | |
|
529 | 526 | class MPIExecLauncher(MPILauncher, DeprecatedMPILauncher): |
|
530 | 527 | """Deprecated, use MPILauncher""" |
|
531 | 528 | def __init__(self, *args, **kwargs): |
|
532 | 529 | super(MPIExecLauncher, self).__init__(*args, **kwargs) |
|
533 | 530 | self.warn() |
|
534 | 531 | |
|
535 | 532 | class MPIExecControllerLauncher(MPIControllerLauncher, DeprecatedMPILauncher): |
|
536 | 533 | """Deprecated, use MPIControllerLauncher""" |
|
537 | 534 | def __init__(self, *args, **kwargs): |
|
538 | 535 | super(MPIExecControllerLauncher, self).__init__(*args, **kwargs) |
|
539 | 536 | self.warn() |
|
540 | 537 | |
|
541 | 538 | class MPIExecEngineSetLauncher(MPIEngineSetLauncher, DeprecatedMPILauncher): |
|
542 | 539 | """Deprecated, use MPIEngineSetLauncher""" |
|
543 | 540 | def __init__(self, *args, **kwargs): |
|
544 | 541 | super(MPIExecEngineSetLauncher, self).__init__(*args, **kwargs) |
|
545 | 542 | self.warn() |
|
546 | 543 | |
|
547 | 544 | |
|
548 | 545 | #----------------------------------------------------------------------------- |
|
549 | 546 | # SSH launchers |
|
550 | 547 | #----------------------------------------------------------------------------- |
|
551 | 548 | |
|
552 | 549 | # TODO: Get SSH Launcher back to level of sshx in 0.10.2 |
|
553 | 550 | |
|
554 | 551 | class SSHLauncher(LocalProcessLauncher): |
|
555 | 552 | """A minimal launcher for ssh. |
|
556 | 553 | |
|
557 | 554 | To be useful this will probably have to be extended to use the ``sshx`` |
|
558 | 555 | idea for environment variables. There could be other things this needs |
|
559 | 556 | as well. |
|
560 | 557 | """ |
|
561 | 558 | |
|
562 | 559 | ssh_cmd = List(['ssh'], config=True, |
|
563 | 560 | help="command for starting ssh") |
|
564 | 561 | ssh_args = List(['-tt'], config=True, |
|
565 | 562 | help="args to pass to ssh") |
|
563 | scp_cmd = List(['scp'], config=True, | |
|
564 | help="command for sending files") | |
|
566 | 565 | program = List(['date'], |
|
567 | 566 | help="Program to launch via ssh") |
|
568 | 567 | program_args = List([], |
|
569 | 568 | help="args to pass to remote program") |
|
570 | 569 | hostname = Unicode('', config=True, |
|
571 | 570 | help="hostname on which to launch the program") |
|
572 | 571 | user = Unicode('', config=True, |
|
573 | 572 | help="username for ssh") |
|
574 | 573 | location = Unicode('', config=True, |
|
575 | 574 | help="user@hostname location for ssh in one setting") |
|
575 | to_fetch = List([], config=True, | |
|
576 | help="List of (remote, local) files to fetch after starting") | |
|
577 | to_send = List([], config=True, | |
|
578 | help="List of (local, remote) files to send before starting") | |
|
576 | 579 | |
|
577 | 580 | def _hostname_changed(self, name, old, new): |
|
578 | 581 | if self.user: |
|
579 | 582 | self.location = u'%s@%s' % (self.user, new) |
|
580 | 583 | else: |
|
581 | 584 | self.location = new |
|
582 | 585 | |
|
583 | 586 | def _user_changed(self, name, old, new): |
|
584 | 587 | self.location = u'%s@%s' % (new, self.hostname) |
|
585 | 588 | |
|
586 | 589 | def find_args(self): |
|
587 | 590 | return self.ssh_cmd + self.ssh_args + [self.location] + \ |
|
588 | 591 | self.program + self.program_args |
|
592 | ||
|
593 | def _send_file(self, local, remote): | |
|
594 | """send a single file""" | |
|
595 | remote = "%s:%s" % (self.location, remote) | |
|
596 | for i in range(10): | |
|
597 | if not os.path.exists(local): | |
|
598 | self.log.debug("waiting for %s" % local) | |
|
599 | time.sleep(1) | |
|
600 | else: | |
|
601 | break | |
|
602 | self.log.info("sending %s to %s", local, remote) | |
|
603 | check_output(self.scp_cmd + [local, remote]) | |
|
604 | ||
|
605 | def send_files(self): | |
|
606 | """send our files (called before start)""" | |
|
607 | if not self.to_send: | |
|
608 | return | |
|
609 | for local_file, remote_file in self.to_send: | |
|
610 | self._send_file(local_file, remote_file) | |
|
611 | ||
|
612 | def _fetch_file(self, remote, local): | |
|
613 | """fetch a single file""" | |
|
614 | full_remote = "%s:%s" % (self.location, remote) | |
|
615 | self.log.info("fetching %s from %s", local, full_remote) | |
|
616 | for i in range(10): | |
|
617 | # wait up to 10s for remote file to exist | |
|
618 | check = check_output(self.ssh_cmd + self.ssh_args + \ | |
|
619 | [self.location, 'test -e', remote, "&& echo 'yes' || echo 'no'"]) | |
|
620 | check = check.strip() | |
|
621 | if check == 'no': | |
|
622 | time.sleep(1) | |
|
623 | elif check == 'yes': | |
|
624 | break | |
|
625 | check_output(self.scp_cmd + [full_remote, local]) | |
|
626 | ||
|
627 | def fetch_files(self): | |
|
628 | """fetch remote files (called after start)""" | |
|
629 | if not self.to_fetch: | |
|
630 | return | |
|
631 | for remote_file, local_file in self.to_fetch: | |
|
632 | self._fetch_file(remote_file, local_file) | |
|
589 | 633 | |
|
590 | 634 | def start(self, hostname=None, user=None): |
|
591 | 635 | if hostname is not None: |
|
592 | 636 | self.hostname = hostname |
|
593 | 637 | if user is not None: |
|
594 | 638 | self.user = user |
|
595 | ||
|
596 | return super(SSHLauncher, self).start() | |
|
639 | ||
|
640 | self.send_files() | |
|
641 | super(SSHLauncher, self).start() | |
|
642 | self.fetch_files() | |
|
597 | 643 | |
|
598 | 644 | def signal(self, sig): |
|
599 | 645 | if self.state == 'running': |
|
600 | 646 | # send escaped ssh connection-closer |
|
601 | 647 | self.process.stdin.write('~.') |
|
602 | 648 | self.process.stdin.flush() |
|
603 | 649 | |
|
650 | class SSHClusterLauncher(SSHLauncher): | |
|
651 | ||
|
652 | remote_profile_dir = Unicode('', config=True, | |
|
653 | help="""The remote profile_dir to use. | |
|
654 | ||
|
655 | If not specified, use calling profile, stripping out possible leading homedir. | |
|
656 | """) | |
|
657 | ||
|
658 | def _remote_profie_dir_default(self): | |
|
659 | """turns /home/you/.ipython/profile_foo into .ipython/profile_foo | |
|
660 | """ | |
|
661 | home = get_home_dir() | |
|
662 | if not home.endswith('/'): | |
|
663 | home = home+'/' | |
|
664 | ||
|
665 | if self.profile_dir.startswith(home): | |
|
666 | return self.profile_dir[len(home):] | |
|
667 | else: | |
|
668 | return self.profile_dir | |
|
669 | ||
|
670 | def _cluster_id_changed(self, name, old, new): | |
|
671 | if new: | |
|
672 | raise ValueError("cluster id not supported by SSH launchers") | |
|
673 | ||
|
674 | @property | |
|
675 | def cluster_args(self): | |
|
676 | return ['--profile-dir', self.remote_profile_dir] | |
|
604 | 677 | |
|
605 | ||
|
606 | class SSHControllerLauncher(SSHLauncher, ControllerMixin): | |
|
678 | class SSHControllerLauncher(SSHClusterLauncher, ControllerMixin): | |
|
607 | 679 | |
|
608 | 680 | # alias back to *non-configurable* program[_args] for use in find_args() |
|
609 | 681 | # this way all Controller/EngineSetLaunchers have the same form, rather |
|
610 | 682 | # than *some* having `program_args` and others `controller_args` |
|
683 | ||
|
684 | def _controller_cmd_default(self): | |
|
685 | return ['ipcontroller'] | |
|
686 | ||
|
611 | 687 | @property |
|
612 | 688 | def program(self): |
|
613 | 689 | return self.controller_cmd |
|
614 | ||
|
690 | ||
|
615 | 691 | @property |
|
616 | 692 | def program_args(self): |
|
617 | 693 | return self.cluster_args + self.controller_args |
|
618 | 694 | |
|
695 | def _to_fetch_default(self): | |
|
696 | return [ | |
|
697 | (os.path.join(self.remote_profile_dir, 'security', cf), | |
|
698 | os.path.join(self.profile_dir, 'security', cf),) | |
|
699 | for cf in ('ipcontroller-client.json', 'ipcontroller-engine.json') | |
|
700 | ] | |
|
619 | 701 | |
|
620 | class SSHEngineLauncher(SSHLauncher, EngineMixin): | |
|
702 | class SSHEngineLauncher(SSHClusterLauncher, EngineMixin): | |
|
621 | 703 | |
|
622 | 704 | # alias back to *non-configurable* program[_args] for use in find_args() |
|
623 | 705 | # this way all Controller/EngineSetLaunchers have the same form, rather |
|
624 | 706 | # than *some* having `program_args` and others `controller_args` |
|
707 | ||
|
708 | def _engine_cmd_default(self): | |
|
709 | return ['ipengine'] | |
|
710 | ||
|
625 | 711 | @property |
|
626 | 712 | def program(self): |
|
627 | 713 | return self.engine_cmd |
|
628 | 714 | |
|
629 | 715 | @property |
|
630 | 716 | def program_args(self): |
|
631 | 717 | return self.cluster_args + self.engine_args |
|
718 | ||
|
719 | def _to_send_default(self): | |
|
720 | return [ | |
|
721 | (os.path.join(self.profile_dir, 'security', cf), | |
|
722 | os.path.join(self.remote_profile_dir, 'security', cf)) | |
|
723 | for cf in ('ipcontroller-client.json', 'ipcontroller-engine.json') | |
|
724 | ] | |
|
632 | 725 | |
|
633 | 726 | |
|
634 | 727 | class SSHEngineSetLauncher(LocalEngineSetLauncher): |
|
635 | 728 | launcher_class = SSHEngineLauncher |
|
636 | 729 | engines = Dict(config=True, |
|
637 | 730 | help="""dict of engines to launch. This is a dict by hostname of ints, |
|
638 | 731 | corresponding to the number of engines to start on that host.""") |
|
639 | 732 | |
|
640 | 733 | @property |
|
641 | 734 | def engine_count(self): |
|
642 | 735 | """determine engine count from `engines` dict""" |
|
643 | 736 | count = 0 |
|
644 | 737 | for n in self.engines.itervalues(): |
|
645 | 738 | if isinstance(n, (tuple,list)): |
|
646 | 739 | n,args = n |
|
647 | 740 | count += n |
|
648 | 741 | return count |
|
649 | 742 | |
|
650 | 743 | def start(self, n): |
|
651 | 744 | """Start engines by profile or profile_dir. |
|
652 | 745 | `n` is ignored, and the `engines` config property is used instead. |
|
653 | 746 | """ |
|
654 | 747 | |
|
655 | 748 | dlist = [] |
|
656 | 749 | for host, n in self.engines.iteritems(): |
|
657 | 750 | if isinstance(n, (tuple, list)): |
|
658 | 751 | n, args = n |
|
659 | 752 | else: |
|
660 | 753 | args = copy.deepcopy(self.engine_args) |
|
661 | 754 | |
|
662 | 755 | if '@' in host: |
|
663 | 756 | user,host = host.split('@',1) |
|
664 | 757 | else: |
|
665 | 758 | user=None |
|
666 | 759 | for i in range(n): |
|
667 | 760 | if i > 0: |
|
668 | 761 | time.sleep(self.delay) |
|
669 | 762 | el = self.launcher_class(work_dir=self.work_dir, config=self.config, log=self.log, |
|
670 | 763 | profile_dir=self.profile_dir, cluster_id=self.cluster_id, |
|
671 | 764 | ) |
|
765 | if i > 0: | |
|
766 | # only send files for the first engine on each host | |
|
767 | el.to_send = [] | |
|
672 | 768 | |
|
673 | 769 | # Copy the engine args over to each engine launcher. |
|
674 | 770 | el.engine_cmd = self.engine_cmd |
|
675 | 771 | el.engine_args = args |
|
676 | 772 | el.on_stop(self._notice_engine_stopped) |
|
677 | 773 | d = el.start(user=user, hostname=host) |
|
678 | 774 | self.launchers[ "%s/%i" % (host,i) ] = el |
|
679 | 775 | dlist.append(d) |
|
680 | 776 | self.notify_start(dlist) |
|
681 | 777 | return dlist |
|
682 | 778 | |
|
683 | 779 | |
|
780 | class SSHProxyEngineSetLauncher(SSHClusterLauncher): | |
|
781 | """Launcher for calling | |
|
782 | `ipcluster engines` on a remote machine. | |
|
783 | ||
|
784 | Requires that remote profile is already configured. | |
|
785 | """ | |
|
786 | ||
|
787 | n = Integer() | |
|
788 | ipcluster_cmd = List(['ipcluster'], config=True) | |
|
789 | ||
|
790 | @property | |
|
791 | def program(self): | |
|
792 | return self.ipcluster_cmd + ['engines'] | |
|
793 | ||
|
794 | @property | |
|
795 | def program_args(self): | |
|
796 | return ['-n', str(self.n), '--profile-dir', self.remote_profile_dir] | |
|
797 | ||
|
798 | def _to_send_default(self): | |
|
799 | return [ | |
|
800 | (os.path.join(self.profile_dir, 'security', cf), | |
|
801 | os.path.join(self.remote_profile_dir, 'security', cf)) | |
|
802 | for cf in ('ipcontroller-client.json', 'ipcontroller-engine.json') | |
|
803 | ] | |
|
804 | ||
|
805 | def start(self, n): | |
|
806 | self.n = n | |
|
807 | super(SSHProxyEngineSetLauncher, self).start() | |
|
808 | ||
|
684 | 809 | |
|
685 | 810 | #----------------------------------------------------------------------------- |
|
686 | 811 | # Windows HPC Server 2008 scheduler launchers |
|
687 | 812 | #----------------------------------------------------------------------------- |
|
688 | 813 | |
|
689 | 814 | |
|
690 | 815 | # This is only used on Windows. |
|
691 | 816 | def find_job_cmd(): |
|
692 | 817 | if WINDOWS: |
|
693 | 818 | try: |
|
694 | 819 | return find_cmd('job') |
|
695 | 820 | except (FindCmdError, ImportError): |
|
696 | 821 | # ImportError will be raised if win32api is not installed |
|
697 | 822 | return 'job' |
|
698 | 823 | else: |
|
699 | 824 | return 'job' |
|
700 | 825 | |
|
701 | 826 | |
|
702 | 827 | class WindowsHPCLauncher(BaseLauncher): |
|
703 | 828 | |
|
704 | 829 | job_id_regexp = Unicode(r'\d+', config=True, |
|
705 | 830 | help="""A regular expression used to get the job id from the output of the |
|
706 | 831 | submit_command. """ |
|
707 | 832 | ) |
|
708 | 833 | job_file_name = Unicode(u'ipython_job.xml', config=True, |
|
709 | 834 | help="The filename of the instantiated job script.") |
|
710 | 835 | # The full path to the instantiated job script. This gets made dynamically |
|
711 | 836 | # by combining the work_dir with the job_file_name. |
|
712 | 837 | job_file = Unicode(u'') |
|
713 | 838 | scheduler = Unicode('', config=True, |
|
714 | 839 | help="The hostname of the scheduler to submit the job to.") |
|
715 | 840 | job_cmd = Unicode(find_job_cmd(), config=True, |
|
716 | 841 | help="The command for submitting jobs.") |
|
717 | 842 | |
|
718 | 843 | def __init__(self, work_dir=u'.', config=None, **kwargs): |
|
719 | 844 | super(WindowsHPCLauncher, self).__init__( |
|
720 | 845 | work_dir=work_dir, config=config, **kwargs |
|
721 | 846 | ) |
|
722 | 847 | |
|
723 | 848 | @property |
|
724 | 849 | def job_file(self): |
|
725 | 850 | return os.path.join(self.work_dir, self.job_file_name) |
|
726 | 851 | |
|
727 | 852 | def write_job_file(self, n): |
|
728 | 853 | raise NotImplementedError("Implement write_job_file in a subclass.") |
|
729 | 854 | |
|
730 | 855 | def find_args(self): |
|
731 | 856 | return [u'job.exe'] |
|
732 | 857 | |
|
733 | 858 | def parse_job_id(self, output): |
|
734 | 859 | """Take the output of the submit command and return the job id.""" |
|
735 | 860 | m = re.search(self.job_id_regexp, output) |
|
736 | 861 | if m is not None: |
|
737 | 862 | job_id = m.group() |
|
738 | 863 | else: |
|
739 | 864 | raise LauncherError("Job id couldn't be determined: %s" % output) |
|
740 | 865 | self.job_id = job_id |
|
741 | 866 | self.log.info('Job started with id: %r', job_id) |
|
742 | 867 | return job_id |
|
743 | 868 | |
|
744 | 869 | def start(self, n): |
|
745 | 870 | """Start n copies of the process using the Win HPC job scheduler.""" |
|
746 | 871 | self.write_job_file(n) |
|
747 | 872 | args = [ |
|
748 | 873 | 'submit', |
|
749 | 874 | '/jobfile:%s' % self.job_file, |
|
750 | 875 | '/scheduler:%s' % self.scheduler |
|
751 | 876 | ] |
|
752 | 877 | self.log.debug("Starting Win HPC Job: %s" % (self.job_cmd + ' ' + ' '.join(args),)) |
|
753 | 878 | |
|
754 | 879 | output = check_output([self.job_cmd]+args, |
|
755 | 880 | env=os.environ, |
|
756 | 881 | cwd=self.work_dir, |
|
757 | 882 | stderr=STDOUT |
|
758 | 883 | ) |
|
759 | 884 | job_id = self.parse_job_id(output) |
|
760 | 885 | self.notify_start(job_id) |
|
761 | 886 | return job_id |
|
762 | 887 | |
|
763 | 888 | def stop(self): |
|
764 | 889 | args = [ |
|
765 | 890 | 'cancel', |
|
766 | 891 | self.job_id, |
|
767 | 892 | '/scheduler:%s' % self.scheduler |
|
768 | 893 | ] |
|
769 | 894 | self.log.info("Stopping Win HPC Job: %s" % (self.job_cmd + ' ' + ' '.join(args),)) |
|
770 | 895 | try: |
|
771 | 896 | output = check_output([self.job_cmd]+args, |
|
772 | 897 | env=os.environ, |
|
773 | 898 | cwd=self.work_dir, |
|
774 | 899 | stderr=STDOUT |
|
775 | 900 | ) |
|
776 | 901 | except: |
|
777 | 902 | output = 'The job already appears to be stoppped: %r' % self.job_id |
|
778 | 903 | self.notify_stop(dict(job_id=self.job_id, output=output)) # Pass the output of the kill cmd |
|
779 | 904 | return output |
|
780 | 905 | |
|
781 | 906 | |
|
782 | 907 | class WindowsHPCControllerLauncher(WindowsHPCLauncher, ClusterAppMixin): |
|
783 | 908 | |
|
784 | 909 | job_file_name = Unicode(u'ipcontroller_job.xml', config=True, |
|
785 | 910 | help="WinHPC xml job file.") |
|
786 | 911 | controller_args = List([], config=False, |
|
787 | 912 | help="extra args to pass to ipcontroller") |
|
788 | 913 | |
|
789 | 914 | def write_job_file(self, n): |
|
790 | 915 | job = IPControllerJob(config=self.config) |
|
791 | 916 | |
|
792 | 917 | t = IPControllerTask(config=self.config) |
|
793 | 918 | # The tasks work directory is *not* the actual work directory of |
|
794 | 919 | # the controller. It is used as the base path for the stdout/stderr |
|
795 | 920 | # files that the scheduler redirects to. |
|
796 | 921 | t.work_directory = self.profile_dir |
|
797 | 922 | # Add the profile_dir and from self.start(). |
|
798 | 923 | t.controller_args.extend(self.cluster_args) |
|
799 | 924 | t.controller_args.extend(self.controller_args) |
|
800 | 925 | job.add_task(t) |
|
801 | 926 | |
|
802 | 927 | self.log.debug("Writing job description file: %s", self.job_file) |
|
803 | 928 | job.write(self.job_file) |
|
804 | 929 | |
|
805 | 930 | @property |
|
806 | 931 | def job_file(self): |
|
807 | 932 | return os.path.join(self.profile_dir, self.job_file_name) |
|
808 | 933 | |
|
809 | 934 | def start(self): |
|
810 | 935 | """Start the controller by profile_dir.""" |
|
811 | 936 | return super(WindowsHPCControllerLauncher, self).start(1) |
|
812 | 937 | |
|
813 | 938 | |
|
814 | 939 | class WindowsHPCEngineSetLauncher(WindowsHPCLauncher, ClusterAppMixin): |
|
815 | 940 | |
|
816 | 941 | job_file_name = Unicode(u'ipengineset_job.xml', config=True, |
|
817 | 942 | help="jobfile for ipengines job") |
|
818 | 943 | engine_args = List([], config=False, |
|
819 | 944 | help="extra args to pas to ipengine") |
|
820 | 945 | |
|
821 | 946 | def write_job_file(self, n): |
|
822 | 947 | job = IPEngineSetJob(config=self.config) |
|
823 | 948 | |
|
824 | 949 | for i in range(n): |
|
825 | 950 | t = IPEngineTask(config=self.config) |
|
826 | 951 | # The tasks work directory is *not* the actual work directory of |
|
827 | 952 | # the engine. It is used as the base path for the stdout/stderr |
|
828 | 953 | # files that the scheduler redirects to. |
|
829 | 954 | t.work_directory = self.profile_dir |
|
830 | 955 | # Add the profile_dir and from self.start(). |
|
831 | 956 | t.engine_args.extend(self.cluster_args) |
|
832 | 957 | t.engine_args.extend(self.engine_args) |
|
833 | 958 | job.add_task(t) |
|
834 | 959 | |
|
835 | 960 | self.log.debug("Writing job description file: %s", self.job_file) |
|
836 | 961 | job.write(self.job_file) |
|
837 | 962 | |
|
838 | 963 | @property |
|
839 | 964 | def job_file(self): |
|
840 | 965 | return os.path.join(self.profile_dir, self.job_file_name) |
|
841 | 966 | |
|
842 | 967 | def start(self, n): |
|
843 | 968 | """Start the controller by profile_dir.""" |
|
844 | 969 | return super(WindowsHPCEngineSetLauncher, self).start(n) |
|
845 | 970 | |
|
846 | 971 | |
|
847 | 972 | #----------------------------------------------------------------------------- |
|
848 | 973 | # Batch (PBS) system launchers |
|
849 | 974 | #----------------------------------------------------------------------------- |
|
850 | 975 | |
|
851 | 976 | class BatchClusterAppMixin(ClusterAppMixin): |
|
852 | 977 | """ClusterApp mixin that updates the self.context dict, rather than cl-args.""" |
|
853 | 978 | def _profile_dir_changed(self, name, old, new): |
|
854 | 979 | self.context[name] = new |
|
855 | 980 | _cluster_id_changed = _profile_dir_changed |
|
856 | 981 | |
|
857 | 982 | def _profile_dir_default(self): |
|
858 | 983 | self.context['profile_dir'] = '' |
|
859 | 984 | return '' |
|
860 | 985 | def _cluster_id_default(self): |
|
861 | 986 | self.context['cluster_id'] = '' |
|
862 | 987 | return '' |
|
863 | 988 | |
|
864 | 989 | |
|
865 | 990 | class BatchSystemLauncher(BaseLauncher): |
|
866 | 991 | """Launch an external process using a batch system. |
|
867 | 992 | |
|
868 | 993 | This class is designed to work with UNIX batch systems like PBS, LSF, |
|
869 | 994 | GridEngine, etc. The overall model is that there are different commands |
|
870 | 995 | like qsub, qdel, etc. that handle the starting and stopping of the process. |
|
871 | 996 | |
|
872 | 997 | This class also has the notion of a batch script. The ``batch_template`` |
|
873 | 998 | attribute can be set to a string that is a template for the batch script. |
|
874 | 999 | This template is instantiated using string formatting. Thus the template can |
|
875 | 1000 | use {n} fot the number of instances. Subclasses can add additional variables |
|
876 | 1001 | to the template dict. |
|
877 | 1002 | """ |
|
878 | 1003 | |
|
879 | 1004 | # Subclasses must fill these in. See PBSEngineSet |
|
880 | 1005 | submit_command = List([''], config=True, |
|
881 | 1006 | help="The name of the command line program used to submit jobs.") |
|
882 | 1007 | delete_command = List([''], config=True, |
|
883 | 1008 | help="The name of the command line program used to delete jobs.") |
|
884 | 1009 | job_id_regexp = Unicode('', config=True, |
|
885 | 1010 | help="""A regular expression used to get the job id from the output of the |
|
886 | 1011 | submit_command.""") |
|
887 | 1012 | batch_template = Unicode('', config=True, |
|
888 | 1013 | help="The string that is the batch script template itself.") |
|
889 | 1014 | batch_template_file = Unicode(u'', config=True, |
|
890 | 1015 | help="The file that contains the batch template.") |
|
891 | 1016 | batch_file_name = Unicode(u'batch_script', config=True, |
|
892 | 1017 | help="The filename of the instantiated batch script.") |
|
893 | 1018 | queue = Unicode(u'', config=True, |
|
894 | 1019 | help="The PBS Queue.") |
|
895 | 1020 | |
|
896 | 1021 | def _queue_changed(self, name, old, new): |
|
897 | 1022 | self.context[name] = new |
|
898 | 1023 | |
|
899 | 1024 | n = Integer(1) |
|
900 | 1025 | _n_changed = _queue_changed |
|
901 | 1026 | |
|
902 | 1027 | # not configurable, override in subclasses |
|
903 | 1028 | # PBS Job Array regex |
|
904 | 1029 | job_array_regexp = Unicode('') |
|
905 | 1030 | job_array_template = Unicode('') |
|
906 | 1031 | # PBS Queue regex |
|
907 | 1032 | queue_regexp = Unicode('') |
|
908 | 1033 | queue_template = Unicode('') |
|
909 | 1034 | # The default batch template, override in subclasses |
|
910 | 1035 | default_template = Unicode('') |
|
911 | 1036 | # The full path to the instantiated batch script. |
|
912 | 1037 | batch_file = Unicode(u'') |
|
913 | 1038 | # the format dict used with batch_template: |
|
914 | 1039 | context = Dict() |
|
915 | 1040 | def _context_default(self): |
|
916 | 1041 | """load the default context with the default values for the basic keys |
|
917 | 1042 | |
|
918 | 1043 | because the _trait_changed methods only load the context if they |
|
919 | 1044 | are set to something other than the default value. |
|
920 | 1045 | """ |
|
921 | 1046 | return dict(n=1, queue=u'', profile_dir=u'', cluster_id=u'') |
|
922 | 1047 | |
|
923 | 1048 | # the Formatter instance for rendering the templates: |
|
924 | 1049 | formatter = Instance(EvalFormatter, (), {}) |
|
925 | 1050 | |
|
926 | 1051 | |
|
927 | 1052 | def find_args(self): |
|
928 | 1053 | return self.submit_command + [self.batch_file] |
|
929 | 1054 | |
|
930 | 1055 | def __init__(self, work_dir=u'.', config=None, **kwargs): |
|
931 | 1056 | super(BatchSystemLauncher, self).__init__( |
|
932 | 1057 | work_dir=work_dir, config=config, **kwargs |
|
933 | 1058 | ) |
|
934 | 1059 | self.batch_file = os.path.join(self.work_dir, self.batch_file_name) |
|
935 | 1060 | |
|
936 | 1061 | def parse_job_id(self, output): |
|
937 | 1062 | """Take the output of the submit command and return the job id.""" |
|
938 | 1063 | m = re.search(self.job_id_regexp, output) |
|
939 | 1064 | if m is not None: |
|
940 | 1065 | job_id = m.group() |
|
941 | 1066 | else: |
|
942 | 1067 | raise LauncherError("Job id couldn't be determined: %s" % output) |
|
943 | 1068 | self.job_id = job_id |
|
944 | 1069 | self.log.info('Job submitted with job id: %r', job_id) |
|
945 | 1070 | return job_id |
|
946 | 1071 | |
|
947 | 1072 | def write_batch_script(self, n): |
|
948 | 1073 | """Instantiate and write the batch script to the work_dir.""" |
|
949 | 1074 | self.n = n |
|
950 | 1075 | # first priority is batch_template if set |
|
951 | 1076 | if self.batch_template_file and not self.batch_template: |
|
952 | 1077 | # second priority is batch_template_file |
|
953 | 1078 | with open(self.batch_template_file) as f: |
|
954 | 1079 | self.batch_template = f.read() |
|
955 | 1080 | if not self.batch_template: |
|
956 | 1081 | # third (last) priority is default_template |
|
957 | 1082 | self.batch_template = self.default_template |
|
958 | 1083 | |
|
959 | 1084 | # add jobarray or queue lines to user-specified template |
|
960 | 1085 | # note that this is *only* when user did not specify a template. |
|
961 | 1086 | regex = re.compile(self.job_array_regexp) |
|
962 | 1087 | # print regex.search(self.batch_template) |
|
963 | 1088 | if not regex.search(self.batch_template): |
|
964 | 1089 | self.log.debug("adding job array settings to batch script") |
|
965 | 1090 | firstline, rest = self.batch_template.split('\n',1) |
|
966 | 1091 | self.batch_template = u'\n'.join([firstline, self.job_array_template, rest]) |
|
967 | 1092 | |
|
968 | 1093 | regex = re.compile(self.queue_regexp) |
|
969 | 1094 | # print regex.search(self.batch_template) |
|
970 | 1095 | if self.queue and not regex.search(self.batch_template): |
|
971 | 1096 | self.log.debug("adding PBS queue settings to batch script") |
|
972 | 1097 | firstline, rest = self.batch_template.split('\n',1) |
|
973 | 1098 | self.batch_template = u'\n'.join([firstline, self.queue_template, rest]) |
|
974 | 1099 | |
|
975 | 1100 | script_as_string = self.formatter.format(self.batch_template, **self.context) |
|
976 | 1101 | self.log.debug('Writing batch script: %s', self.batch_file) |
|
977 | 1102 | |
|
978 | 1103 | with open(self.batch_file, 'w') as f: |
|
979 | 1104 | f.write(script_as_string) |
|
980 | 1105 | os.chmod(self.batch_file, stat.S_IRUSR | stat.S_IWUSR | stat.S_IXUSR) |
|
981 | 1106 | |
|
982 | 1107 | def start(self, n): |
|
983 | 1108 | """Start n copies of the process using a batch system.""" |
|
984 | 1109 | self.log.debug("Starting %s: %r", self.__class__.__name__, self.args) |
|
985 | 1110 | # Here we save profile_dir in the context so they |
|
986 | 1111 | # can be used in the batch script template as {profile_dir} |
|
987 | 1112 | self.write_batch_script(n) |
|
988 | 1113 | output = check_output(self.args, env=os.environ) |
|
989 | 1114 | |
|
990 | 1115 | job_id = self.parse_job_id(output) |
|
991 | 1116 | self.notify_start(job_id) |
|
992 | 1117 | return job_id |
|
993 | 1118 | |
|
994 | 1119 | def stop(self): |
|
995 | 1120 | output = check_output(self.delete_command+[self.job_id], env=os.environ) |
|
996 | 1121 | self.notify_stop(dict(job_id=self.job_id, output=output)) # Pass the output of the kill cmd |
|
997 | 1122 | return output |
|
998 | 1123 | |
|
999 | 1124 | |
|
1000 | 1125 | class PBSLauncher(BatchSystemLauncher): |
|
1001 | 1126 | """A BatchSystemLauncher subclass for PBS.""" |
|
1002 | 1127 | |
|
1003 | 1128 | submit_command = List(['qsub'], config=True, |
|
1004 | 1129 | help="The PBS submit command ['qsub']") |
|
1005 | 1130 | delete_command = List(['qdel'], config=True, |
|
1006 | 1131 | help="The PBS delete command ['qsub']") |
|
1007 | 1132 | job_id_regexp = Unicode(r'\d+', config=True, |
|
1008 | 1133 | help="Regular expresion for identifying the job ID [r'\d+']") |
|
1009 | 1134 | |
|
1010 | 1135 | batch_file = Unicode(u'') |
|
1011 | 1136 | job_array_regexp = Unicode('#PBS\W+-t\W+[\w\d\-\$]+') |
|
1012 | 1137 | job_array_template = Unicode('#PBS -t 1-{n}') |
|
1013 | 1138 | queue_regexp = Unicode('#PBS\W+-q\W+\$?\w+') |
|
1014 | 1139 | queue_template = Unicode('#PBS -q {queue}') |
|
1015 | 1140 | |
|
1016 | 1141 | |
|
1017 | 1142 | class PBSControllerLauncher(PBSLauncher, BatchClusterAppMixin): |
|
1018 | 1143 | """Launch a controller using PBS.""" |
|
1019 | 1144 | |
|
1020 | 1145 | batch_file_name = Unicode(u'pbs_controller', config=True, |
|
1021 | 1146 | help="batch file name for the controller job.") |
|
1022 | 1147 | default_template= Unicode("""#!/bin/sh |
|
1023 | 1148 | #PBS -V |
|
1024 | 1149 | #PBS -N ipcontroller |
|
1025 | 1150 | %s --log-to-file --profile-dir="{profile_dir}" --cluster-id="{cluster_id}" |
|
1026 | 1151 | """%(' '.join(ipcontroller_cmd_argv))) |
|
1027 | 1152 | |
|
1028 | 1153 | |
|
1029 | 1154 | def start(self): |
|
1030 | 1155 | """Start the controller by profile or profile_dir.""" |
|
1031 | 1156 | return super(PBSControllerLauncher, self).start(1) |
|
1032 | 1157 | |
|
1033 | 1158 | |
|
1034 | 1159 | class PBSEngineSetLauncher(PBSLauncher, BatchClusterAppMixin): |
|
1035 | 1160 | """Launch Engines using PBS""" |
|
1036 | 1161 | batch_file_name = Unicode(u'pbs_engines', config=True, |
|
1037 | 1162 | help="batch file name for the engine(s) job.") |
|
1038 | 1163 | default_template= Unicode(u"""#!/bin/sh |
|
1039 | 1164 | #PBS -V |
|
1040 | 1165 | #PBS -N ipengine |
|
1041 | 1166 | %s --profile-dir="{profile_dir}" --cluster-id="{cluster_id}" |
|
1042 | 1167 | """%(' '.join(ipengine_cmd_argv))) |
|
1043 | 1168 | |
|
1044 | 1169 | def start(self, n): |
|
1045 | 1170 | """Start n engines by profile or profile_dir.""" |
|
1046 | 1171 | return super(PBSEngineSetLauncher, self).start(n) |
|
1047 | 1172 | |
|
1048 | 1173 | #SGE is very similar to PBS |
|
1049 | 1174 | |
|
1050 | 1175 | class SGELauncher(PBSLauncher): |
|
1051 | 1176 | """Sun GridEngine is a PBS clone with slightly different syntax""" |
|
1052 | 1177 | job_array_regexp = Unicode('#\$\W+\-t') |
|
1053 | 1178 | job_array_template = Unicode('#$ -t 1-{n}') |
|
1054 | 1179 | queue_regexp = Unicode('#\$\W+-q\W+\$?\w+') |
|
1055 | 1180 | queue_template = Unicode('#$ -q {queue}') |
|
1056 | 1181 | |
|
1057 | 1182 | class SGEControllerLauncher(SGELauncher, BatchClusterAppMixin): |
|
1058 | 1183 | """Launch a controller using SGE.""" |
|
1059 | 1184 | |
|
1060 | 1185 | batch_file_name = Unicode(u'sge_controller', config=True, |
|
1061 | 1186 | help="batch file name for the ipontroller job.") |
|
1062 | 1187 | default_template= Unicode(u"""#$ -V |
|
1063 | 1188 | #$ -S /bin/sh |
|
1064 | 1189 | #$ -N ipcontroller |
|
1065 | 1190 | %s --log-to-file --profile-dir="{profile_dir}" --cluster-id="{cluster_id}" |
|
1066 | 1191 | """%(' '.join(ipcontroller_cmd_argv))) |
|
1067 | 1192 | |
|
1068 | 1193 | def start(self): |
|
1069 | 1194 | """Start the controller by profile or profile_dir.""" |
|
1070 | 1195 | return super(SGEControllerLauncher, self).start(1) |
|
1071 | 1196 | |
|
1072 | 1197 | class SGEEngineSetLauncher(SGELauncher, BatchClusterAppMixin): |
|
1073 | 1198 | """Launch Engines with SGE""" |
|
1074 | 1199 | batch_file_name = Unicode(u'sge_engines', config=True, |
|
1075 | 1200 | help="batch file name for the engine(s) job.") |
|
1076 | 1201 | default_template = Unicode("""#$ -V |
|
1077 | 1202 | #$ -S /bin/sh |
|
1078 | 1203 | #$ -N ipengine |
|
1079 | 1204 | %s --profile-dir="{profile_dir}" --cluster-id="{cluster_id}" |
|
1080 | 1205 | """%(' '.join(ipengine_cmd_argv))) |
|
1081 | 1206 | |
|
1082 | 1207 | def start(self, n): |
|
1083 | 1208 | """Start n engines by profile or profile_dir.""" |
|
1084 | 1209 | return super(SGEEngineSetLauncher, self).start(n) |
|
1085 | 1210 | |
|
1086 | 1211 | |
|
1087 | 1212 | # LSF launchers |
|
1088 | 1213 | |
|
1089 | 1214 | class LSFLauncher(BatchSystemLauncher): |
|
1090 | 1215 | """A BatchSystemLauncher subclass for LSF.""" |
|
1091 | 1216 | |
|
1092 | 1217 | submit_command = List(['bsub'], config=True, |
|
1093 | 1218 | help="The PBS submit command ['bsub']") |
|
1094 | 1219 | delete_command = List(['bkill'], config=True, |
|
1095 | 1220 | help="The PBS delete command ['bkill']") |
|
1096 | 1221 | job_id_regexp = Unicode(r'\d+', config=True, |
|
1097 | 1222 | help="Regular expresion for identifying the job ID [r'\d+']") |
|
1098 | 1223 | |
|
1099 | 1224 | batch_file = Unicode(u'') |
|
1100 | 1225 | job_array_regexp = Unicode('#BSUB[ \t]-J+\w+\[\d+-\d+\]') |
|
1101 | 1226 | job_array_template = Unicode('#BSUB -J ipengine[1-{n}]') |
|
1102 | 1227 | queue_regexp = Unicode('#BSUB[ \t]+-q[ \t]+\w+') |
|
1103 | 1228 | queue_template = Unicode('#BSUB -q {queue}') |
|
1104 | 1229 | |
|
1105 | 1230 | def start(self, n): |
|
1106 | 1231 | """Start n copies of the process using LSF batch system. |
|
1107 | 1232 | This cant inherit from the base class because bsub expects |
|
1108 | 1233 | to be piped a shell script in order to honor the #BSUB directives : |
|
1109 | 1234 | bsub < script |
|
1110 | 1235 | """ |
|
1111 | 1236 | # Here we save profile_dir in the context so they |
|
1112 | 1237 | # can be used in the batch script template as {profile_dir} |
|
1113 | 1238 | self.write_batch_script(n) |
|
1114 | 1239 | #output = check_output(self.args, env=os.environ) |
|
1115 | 1240 | piped_cmd = self.args[0]+'<\"'+self.args[1]+'\"' |
|
1116 | 1241 | self.log.debug("Starting %s: %s", self.__class__.__name__, piped_cmd) |
|
1117 | 1242 | p = Popen(piped_cmd, shell=True,env=os.environ,stdout=PIPE) |
|
1118 | 1243 | output,err = p.communicate() |
|
1119 | 1244 | job_id = self.parse_job_id(output) |
|
1120 | 1245 | self.notify_start(job_id) |
|
1121 | 1246 | return job_id |
|
1122 | 1247 | |
|
1123 | 1248 | |
|
1124 | 1249 | class LSFControllerLauncher(LSFLauncher, BatchClusterAppMixin): |
|
1125 | 1250 | """Launch a controller using LSF.""" |
|
1126 | 1251 | |
|
1127 | 1252 | batch_file_name = Unicode(u'lsf_controller', config=True, |
|
1128 | 1253 | help="batch file name for the controller job.") |
|
1129 | 1254 | default_template= Unicode("""#!/bin/sh |
|
1130 | 1255 | #BSUB -J ipcontroller |
|
1131 | 1256 | #BSUB -oo ipcontroller.o.%%J |
|
1132 | 1257 | #BSUB -eo ipcontroller.e.%%J |
|
1133 | 1258 | %s --log-to-file --profile-dir="{profile_dir}" --cluster-id="{cluster_id}" |
|
1134 | 1259 | """%(' '.join(ipcontroller_cmd_argv))) |
|
1135 | 1260 | |
|
1136 | 1261 | def start(self): |
|
1137 | 1262 | """Start the controller by profile or profile_dir.""" |
|
1138 | 1263 | return super(LSFControllerLauncher, self).start(1) |
|
1139 | 1264 | |
|
1140 | 1265 | |
|
1141 | 1266 | class LSFEngineSetLauncher(LSFLauncher, BatchClusterAppMixin): |
|
1142 | 1267 | """Launch Engines using LSF""" |
|
1143 | 1268 | batch_file_name = Unicode(u'lsf_engines', config=True, |
|
1144 | 1269 | help="batch file name for the engine(s) job.") |
|
1145 | 1270 | default_template= Unicode(u"""#!/bin/sh |
|
1146 | 1271 | #BSUB -oo ipengine.o.%%J |
|
1147 | 1272 | #BSUB -eo ipengine.e.%%J |
|
1148 | 1273 | %s --profile-dir="{profile_dir}" --cluster-id="{cluster_id}" |
|
1149 | 1274 | """%(' '.join(ipengine_cmd_argv))) |
|
1150 | 1275 | |
|
1151 | 1276 | def start(self, n): |
|
1152 | 1277 | """Start n engines by profile or profile_dir.""" |
|
1153 | 1278 | return super(LSFEngineSetLauncher, self).start(n) |
|
1154 | 1279 | |
|
1155 | 1280 | |
|
1156 | 1281 | #----------------------------------------------------------------------------- |
|
1157 | 1282 | # A launcher for ipcluster itself! |
|
1158 | 1283 | #----------------------------------------------------------------------------- |
|
1159 | 1284 | |
|
1160 | 1285 | |
|
1161 | 1286 | class IPClusterLauncher(LocalProcessLauncher): |
|
1162 | 1287 | """Launch the ipcluster program in an external process.""" |
|
1163 | 1288 | |
|
1164 | 1289 | ipcluster_cmd = List(ipcluster_cmd_argv, config=True, |
|
1165 | 1290 | help="Popen command for ipcluster") |
|
1166 | 1291 | ipcluster_args = List( |
|
1167 | 1292 | ['--clean-logs=True', '--log-to-file', '--log-level=%i'%logging.INFO], config=True, |
|
1168 | 1293 | help="Command line arguments to pass to ipcluster.") |
|
1169 | 1294 | ipcluster_subcommand = Unicode('start') |
|
1170 | 1295 | profile = Unicode('default') |
|
1171 | 1296 | n = Integer(2) |
|
1172 | 1297 | |
|
1173 | 1298 | def find_args(self): |
|
1174 | 1299 | return self.ipcluster_cmd + [self.ipcluster_subcommand] + \ |
|
1175 | 1300 | ['--n=%i'%self.n, '--profile=%s'%self.profile] + \ |
|
1176 | 1301 | self.ipcluster_args |
|
1177 | 1302 | |
|
1178 | 1303 | def start(self): |
|
1179 | 1304 | return super(IPClusterLauncher, self).start() |
|
1180 | 1305 | |
|
1181 | 1306 | #----------------------------------------------------------------------------- |
|
1182 | 1307 | # Collections of launchers |
|
1183 | 1308 | #----------------------------------------------------------------------------- |
|
1184 | 1309 | |
|
1185 | 1310 | local_launchers = [ |
|
1186 | 1311 | LocalControllerLauncher, |
|
1187 | 1312 | LocalEngineLauncher, |
|
1188 | 1313 | LocalEngineSetLauncher, |
|
1189 | 1314 | ] |
|
1190 | 1315 | mpi_launchers = [ |
|
1191 | 1316 | MPILauncher, |
|
1192 | 1317 | MPIControllerLauncher, |
|
1193 | 1318 | MPIEngineSetLauncher, |
|
1194 | 1319 | ] |
|
1195 | 1320 | ssh_launchers = [ |
|
1196 | 1321 | SSHLauncher, |
|
1197 | 1322 | SSHControllerLauncher, |
|
1198 | 1323 | SSHEngineLauncher, |
|
1199 | 1324 | SSHEngineSetLauncher, |
|
1200 | 1325 | ] |
|
1201 | 1326 | winhpc_launchers = [ |
|
1202 | 1327 | WindowsHPCLauncher, |
|
1203 | 1328 | WindowsHPCControllerLauncher, |
|
1204 | 1329 | WindowsHPCEngineSetLauncher, |
|
1205 | 1330 | ] |
|
1206 | 1331 | pbs_launchers = [ |
|
1207 | 1332 | PBSLauncher, |
|
1208 | 1333 | PBSControllerLauncher, |
|
1209 | 1334 | PBSEngineSetLauncher, |
|
1210 | 1335 | ] |
|
1211 | 1336 | sge_launchers = [ |
|
1212 | 1337 | SGELauncher, |
|
1213 | 1338 | SGEControllerLauncher, |
|
1214 | 1339 | SGEEngineSetLauncher, |
|
1215 | 1340 | ] |
|
1216 | 1341 | lsf_launchers = [ |
|
1217 | 1342 | LSFLauncher, |
|
1218 | 1343 | LSFControllerLauncher, |
|
1219 | 1344 | LSFEngineSetLauncher, |
|
1220 | 1345 | ] |
|
1221 | 1346 | all_launchers = local_launchers + mpi_launchers + ssh_launchers + winhpc_launchers\ |
|
1222 | 1347 | + pbs_launchers + sge_launchers + lsf_launchers |
|
1223 | 1348 |
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