Backport PR #5805: fix engine startup files

engine startup_file and startup_command are ignored in 2.0

closes  #5801

IPython/parallel/apps/ipengineapp.py

@@ -1,394 +1,397 b''
 #!/usr/bin/env python
 # encoding: utf-8
 """
 The IPython engine application
 
 Authors:
 
 * Brian Granger
 * MinRK
 
 """
 
 #-----------------------------------------------------------------------------
 #  Copyright (C) 2008-2011  The IPython Development Team
 #
 #  Distributed under the terms of the BSD License.  The full license is in
 #  the file COPYING, distributed as part of this software.
 #-----------------------------------------------------------------------------
 
 #-----------------------------------------------------------------------------
 # Imports
 #-----------------------------------------------------------------------------
 
 import json
 import os
 import sys
 import time
 
 import zmq
 from zmq.eventloop import ioloop
 
 from IPython.core.profiledir import ProfileDir
 from IPython.parallel.apps.baseapp import (
     BaseParallelApplication,
     base_aliases,
     base_flags,
     catch_config_error,
 )
 from IPython.kernel.zmq.log import EnginePUBHandler
 from IPython.kernel.zmq.ipkernel import Kernel
 from IPython.kernel.zmq.kernelapp import IPKernelApp
 from IPython.kernel.zmq.session import (
     Session, session_aliases, session_flags
 )
 from IPython.kernel.zmq.zmqshell import ZMQInteractiveShell
 
 from IPython.config.configurable import Configurable
 
 from IPython.parallel.engine.engine import EngineFactory
 from IPython.parallel.util import disambiguate_ip_address
 
 from IPython.utils.importstring import import_item
 from IPython.utils.py3compat import cast_bytes
 from IPython.utils.traitlets import Bool, Unicode, Dict, List, Float, Instance
 
 
 #-----------------------------------------------------------------------------
 # Module level variables
 #-----------------------------------------------------------------------------
 
 _description = """Start an IPython engine for parallel computing.
 
 IPython engines run in parallel and perform computations on behalf of a client
 and controller. A controller needs to be started before the engines. The
 engine can be configured using command line options or using a cluster
 directory. Cluster directories contain config, log and security files and are
 usually located in your ipython directory and named as "profile_name".
 See the `profile` and `profile-dir` options for details.
 """
 
 _examples = """
 ipengine --ip=192.168.0.1 --port=1000     # connect to hub at ip and port
 ipengine --log-to-file --log-level=DEBUG  # log to a file with DEBUG verbosity
 """
 
 #-----------------------------------------------------------------------------
 # MPI configuration
 #-----------------------------------------------------------------------------
 
 mpi4py_init = """from mpi4py import MPI as mpi
 mpi.size = mpi.COMM_WORLD.Get_size()
 mpi.rank = mpi.COMM_WORLD.Get_rank()
 """
 
 
 pytrilinos_init = """from PyTrilinos import Epetra
 class SimpleStruct:
 pass
 mpi = SimpleStruct()
 mpi.rank = 0
 mpi.size = 0
 """
 
 class MPI(Configurable):
     """Configurable for MPI initialization"""
     use = Unicode('', config=True,
         help='How to enable MPI (mpi4py, pytrilinos, or empty string to disable).'
         )
 
     def _use_changed(self, name, old, new):
         # load default init script if it's not set
         if not self.init_script:
             self.init_script = self.default_inits.get(new, '')
 
     init_script = Unicode('', config=True,
         help="Initialization code for MPI")
 
     default_inits = Dict({'mpi4py' : mpi4py_init, 'pytrilinos':pytrilinos_init},
         config=True)
 
 
 #-----------------------------------------------------------------------------
 # Main application
 #-----------------------------------------------------------------------------
 aliases = dict(
     file = 'IPEngineApp.url_file',
     c = 'IPEngineApp.startup_command',
     s = 'IPEngineApp.startup_script',
 
     url = 'EngineFactory.url',
     ssh = 'EngineFactory.sshserver',
     sshkey = 'EngineFactory.sshkey',
     ip = 'EngineFactory.ip',
     transport = 'EngineFactory.transport',
     port = 'EngineFactory.regport',
     location = 'EngineFactory.location',
 
     timeout = 'EngineFactory.timeout',
 
     mpi = 'MPI.use',
 
 )
 aliases.update(base_aliases)
 aliases.update(session_aliases)
 flags = {}
 flags.update(base_flags)
 flags.update(session_flags)
 
 class IPEngineApp(BaseParallelApplication):
 
     name = 'ipengine'
     description = _description
     examples = _examples
     classes = List([ZMQInteractiveShell, ProfileDir, Session, EngineFactory, Kernel, MPI])
 
     startup_script = Unicode(u'', config=True,
         help='specify a script to be run at startup')
     startup_command = Unicode('', config=True,
             help='specify a command to be run at startup')
 
     url_file = Unicode(u'', config=True,
         help="""The full location of the file containing the connection information for
         the controller. If this is not given, the file must be in the
         security directory of the cluster directory.  This location is
         resolved using the `profile` or `profile_dir` options.""",
         )
     wait_for_url_file = Float(5, config=True,
         help="""The maximum number of seconds to wait for url_file to exist.
         This is useful for batch-systems and shared-filesystems where the
         controller and engine are started at the same time and it
         may take a moment for the controller to write the connector files.""")
 
     url_file_name = Unicode(u'ipcontroller-engine.json', config=True)
 
     def _cluster_id_changed(self, name, old, new):
         if new:
             base = 'ipcontroller-%s' % new
         else:
             base = 'ipcontroller'
         self.url_file_name = "%s-engine.json" % base
 
     log_url = Unicode('', config=True,
         help="""The URL for the iploggerapp instance, for forwarding
         logging to a central location.""")
     
     # an IPKernelApp instance, used to setup listening for shell frontends
     kernel_app = Instance(IPKernelApp)
 
     aliases = Dict(aliases)
     flags = Dict(flags)
     
     @property
     def kernel(self):
         """allow access to the Kernel object, so I look like IPKernelApp"""
         return self.engine.kernel
 
     def find_url_file(self):
         """Set the url file.
 
         Here we don't try to actually see if it exists for is valid as that
         is hadled by the connection logic.
         """
         config = self.config
         # Find the actual controller key file
         if not self.url_file:
             self.url_file = os.path.join(
                 self.profile_dir.security_dir,
                 self.url_file_name
             )
     
     def load_connector_file(self):
         """load config from a JSON connector file,
         at a *lower* priority than command-line/config files.
         """
         
         self.log.info("Loading url_file %r", self.url_file)
         config = self.config
         
         with open(self.url_file) as f:
             num_tries = 0
             max_tries = 5
             d = ""
             while not d:
                 try:
                     d = json.loads(f.read())
                 except ValueError:
                     if num_tries > max_tries:
                         raise
                     num_tries += 1
                     time.sleep(0.5)
         
         # allow hand-override of location for disambiguation
         # and ssh-server
         if 'EngineFactory.location' not in config:
             config.EngineFactory.location = d['location']
         if 'EngineFactory.sshserver' not in config:
             config.EngineFactory.sshserver = d.get('ssh')
         
         location = config.EngineFactory.location
         
         proto, ip = d['interface'].split('://')
         ip = disambiguate_ip_address(ip, location)
         d['interface'] = '%s://%s' % (proto, ip)
         
         # DO NOT allow override of basic URLs, serialization, or key
         # JSON file takes top priority there
         config.Session.key = cast_bytes(d['key'])
         config.Session.signature_scheme = d['signature_scheme']
         
         config.EngineFactory.url = d['interface'] + ':%i' % d['registration']
         
         config.Session.packer = d['pack']
         config.Session.unpacker = d['unpack']
         
         self.log.debug("Config changed:")
         self.log.debug("%r", config)
         self.connection_info = d
     
     def bind_kernel(self, **kwargs):
         """Promote engine to listening kernel, accessible to frontends."""
         if self.kernel_app is not None:
             return
         
         self.log.info("Opening ports for direct connections as an IPython kernel")
         
         kernel = self.kernel
         
         kwargs.setdefault('config', self.config)
         kwargs.setdefault('log', self.log)
         kwargs.setdefault('profile_dir', self.profile_dir)
         kwargs.setdefault('session', self.engine.session)
         
         app = self.kernel_app = IPKernelApp(**kwargs)
         
         # allow IPKernelApp.instance():
         IPKernelApp._instance = app
         
         app.init_connection_file()
         # relevant contents of init_sockets:
         
         app.shell_port = app._bind_socket(kernel.shell_streams[0], app.shell_port)
         app.log.debug("shell ROUTER Channel on port: %i", app.shell_port)
         
         app.iopub_port = app._bind_socket(kernel.iopub_socket, app.iopub_port)
         app.log.debug("iopub PUB Channel on port: %i", app.iopub_port)
         
         kernel.stdin_socket = self.engine.context.socket(zmq.ROUTER)
         app.stdin_port = app._bind_socket(kernel.stdin_socket, app.stdin_port)
         app.log.debug("stdin ROUTER Channel on port: %i", app.stdin_port)
         
         # start the heartbeat, and log connection info:
         
         app.init_heartbeat()
         
         app.log_connection_info()
         app.write_connection_file()
         
     
     def init_engine(self):
         # This is the working dir by now.
         sys.path.insert(0, '')
         config = self.config
         # print config
         self.find_url_file()
         
         # was the url manually specified?
         keys = set(self.config.EngineFactory.keys())
         keys = keys.union(set(self.config.RegistrationFactory.keys()))
         
         if keys.intersection(set(['ip', 'url', 'port'])):
             # Connection info was specified, don't wait for the file
             url_specified = True
             self.wait_for_url_file = 0
         else:
             url_specified = False
 
         if self.wait_for_url_file and not os.path.exists(self.url_file):
             self.log.warn("url_file %r not found", self.url_file)
             self.log.warn("Waiting up to %.1f seconds for it to arrive.", self.wait_for_url_file)
             tic = time.time()
             while not os.path.exists(self.url_file) and (time.time()-tic < self.wait_for_url_file):
                 # wait for url_file to exist, or until time limit
                 time.sleep(0.1)
             
         if os.path.exists(self.url_file):
             self.load_connector_file()
         elif not url_specified:
             self.log.fatal("Fatal: url file never arrived: %s", self.url_file)
             self.exit(1)
         
         exec_lines = []
         for app in ('IPKernelApp', 'InteractiveShellApp'):
-            if '%s.exec_lines' in config:
-                exec_lines = config.IPKernelApp.exec_lines = config[app].exec_lines
+            if '%s.exec_lines' % app in config:
+                exec_lines = config[app].exec_lines
                 break
         
         exec_files = []
         for app in ('IPKernelApp', 'InteractiveShellApp'):
-            if '%s.exec_files' in config:
-                exec_files = config.IPKernelApp.exec_files = config[app].exec_files
+            if '%s.exec_files' % app in config:
+                exec_files = config[app].exec_files
                 break
         
+        config.IPKernelApp.exec_lines = exec_lines
+        config.IPKernelApp.exec_files = exec_files
+        
         if self.startup_script:
             exec_files.append(self.startup_script)
         if self.startup_command:
             exec_lines.append(self.startup_command)
 
         # Create the underlying shell class and Engine
         # shell_class = import_item(self.master_config.Global.shell_class)
         # print self.config
         try:
             self.engine = EngineFactory(config=config, log=self.log,
                             connection_info=self.connection_info,
                         )
         except:
             self.log.error("Couldn't start the Engine", exc_info=True)
             self.exit(1)
     
     def forward_logging(self):
         if self.log_url:
             self.log.info("Forwarding logging to %s", self.log_url)
             context = self.engine.context
             lsock = context.socket(zmq.PUB)
             lsock.connect(self.log_url)
             handler = EnginePUBHandler(self.engine, lsock)
             handler.setLevel(self.log_level)
             self.log.addHandler(handler)
     
     def init_mpi(self):
         global mpi
         self.mpi = MPI(parent=self)
 
         mpi_import_statement = self.mpi.init_script
         if mpi_import_statement:
             try:
                 self.log.info("Initializing MPI:")
                 self.log.info(mpi_import_statement)
                 exec(mpi_import_statement, globals())
             except:
                 mpi = None
         else:
             mpi = None
 
     @catch_config_error
     def initialize(self, argv=None):
         super(IPEngineApp, self).initialize(argv)
         self.init_mpi()
         self.init_engine()
         self.forward_logging()
     
     def start(self):
         self.engine.start()
         try:
             self.engine.loop.start()
         except KeyboardInterrupt:
             self.log.critical("Engine Interrupted, shutting down...\n")
 
 
 launch_new_instance = IPEngineApp.launch_instance
 
 
 if __name__ == '__main__':
     launch_new_instance()