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1 .. _htmlnotebook:
1 .. _htmlnotebook:
2
2
3 =========================
3 =========================
4 An HTML Notebook IPython
4 An HTML Notebook IPython
5 =========================
5 =========================
6
6
7 .. seealso::
7 .. seealso::
8
8
9 :ref:`Installation requirements <installnotebook>` for the Notebook.
9 :ref:`Installation requirements <installnotebook>` for the Notebook.
10
10
11 The IPython Notebook consists of two related components:
11 The IPython Notebook consists of two related components:
12
12
13 * An JSON based Notebook document format for recording and distributing
13 * An JSON based Notebook document format for recording and distributing
14 Python code and rich text.
14 Python code and rich text.
15 * A web-based user interface for authoring and running notebook documents.
15 * A web-based user interface for authoring and running notebook documents.
16
16
17 The Notebook can be used by starting the Notebook server with the
17 The Notebook can be used by starting the Notebook server with the
18 command::
18 command::
19
19
20 $ ipython notebook
20 $ ipython notebook
21
21
22 Note that by default, the notebook doesn't load pylab, it's just a normal
22 Note that by default, the notebook doesn't load pylab, it's just a normal
23 IPython session like any other. If you want pylab support, you must use::
23 IPython session like any other. If you want pylab support, you must use::
24
24
25 $ ipython notebook --pylab
25 $ ipython notebook --pylab
26
26
27 which will behave similar to the terminal and Qt console versions, using your
27 which will behave similar to the terminal and Qt console versions, using your
28 default matplotlib backend and providing floating interactive plot windows. If
28 default matplotlib backend and providing floating interactive plot windows. If
29 you want inline figures, you must manually select the ``inline`` backend::
29 you want inline figures, you must manually select the ``inline`` backend::
30
30
31 $ ipython notebook --pylab=inline
31 $ ipython notebook --pylab=inline
32
32
33 You can start the notebook to communicate via a secure protocol mode using a
34 self-signed certificate by typing::
35
36 $ ipython notebook --certfile=mycert.pem
37
38 .. note::
39
40 A self-signed certificate can be generated with openssl. For example:
41
42 openssl req -x509 -nodes -days 365 -newkey rsa:1024 -keyout mycert.pem -out mycert.pem
43
44 This server uses the same ZeroMQ-based two process kernel architecture as
33 This server uses the same ZeroMQ-based two process kernel architecture as
45 the QT Console as well Tornado for serving HTTP/S requests. Some of the main
34 the QT Console as well Tornado for serving HTTP/S requests. Some of the main
46 features of the Notebook include:
35 features of the Notebook include:
47
36
48 * Display rich data (png/html/latex/svg) in the browser as a result of
37 * Display rich data (png/html/latex/svg) in the browser as a result of
49 computations.
38 computations.
50 * Compose text cells using HTML and Markdown.
39 * Compose text cells using HTML and Markdown.
51 * Import and export notebook documents in range of formats (.ipynb, .py).
40 * Import and export notebook documents in range of formats (.ipynb, .py).
52 * In browser syntax highlighting, tab completion and autoindentation.
41 * In browser syntax highlighting, tab completion and autoindentation.
53 * Inline matplotlib plots that can be stored in Notebook documents and opened
42 * Inline matplotlib plots that can be stored in Notebook documents and opened
54 later.
43 later.
55
44
56 See :ref:`our installation documentation <install_index>` for directions on
45 See :ref:`our installation documentation <install_index>` for directions on
57 how to install the notebook and its dependencies.
46 how to install the notebook and its dependencies.
58
47
59 .. note::
48 .. note::
60
49
61 You can start more than one notebook server at the same time, if you want to
50 You can start more than one notebook server at the same time, if you want to
62 work on notebooks in different directories. By default the first notebook
51 work on notebooks in different directories. By default the first notebook
63 server starts in port 8888, later notebooks search for random ports near
52 server starts in port 8888, later notebooks search for random ports near
64 that one. You can also manually specify the port with the ``--port``
53 that one. You can also manually specify the port with the ``--port``
65 option.
54 option.
66
55
67
56
68 Basic Usage
57 Basic Usage
69 ===========
58 ===========
70
59
71 The landing page of the notebook server application, which we call the IPython
60 The landing page of the notebook server application, which we call the IPython
72 Notebook *dashboard*, shows the notebooks currently available in the directory
61 Notebook *dashboard*, shows the notebooks currently available in the directory
73 in which the application was started, and allows you to create new notebooks.
62 in which the application was started, and allows you to create new notebooks.
74
63
75 A notebook is a combination of two things:
64 A notebook is a combination of two things:
76
65
77 1. An interactive session connected to an IPython kernel, controlled by a web
66 1. An interactive session connected to an IPython kernel, controlled by a web
78 application that can send input to the console and display many types of output
67 application that can send input to the console and display many types of output
79 (text, graphics, mathematics and more). This is the same kernel used by the
68 (text, graphics, mathematics and more). This is the same kernel used by the
80 :ref:`Qt console <qtconsole>`, but in this case the web console sends input in
69 :ref:`Qt console <qtconsole>`, but in this case the web console sends input in
81 persistent cells that you can edit in-place instead of the vertically scrolling
70 persistent cells that you can edit in-place instead of the vertically scrolling
82 terminal style used by the Qt console.
71 terminal style used by the Qt console.
83
72
84 2. A document that can save the inputs and outputs of the session as well as
73 2. A document that can save the inputs and outputs of the session as well as
85 additional text that accompanies the code but is not meant for execution. In
74 additional text that accompanies the code but is not meant for execution. In
86 this way, notebook files serve as a complete computational record of a session
75 this way, notebook files serve as a complete computational record of a session
87 including explanatory text and mathematics, code and resulting figures. These
76 including explanatory text and mathematics, code and resulting figures. These
88 documents are internally JSON files and are saved with the ``.ipynb``
77 documents are internally JSON files and are saved with the ``.ipynb``
89 extension.
78 extension.
90
79
91 If you have ever used the Mathematica or Sage notebooks (the latter is also
80 If you have ever used the Mathematica or Sage notebooks (the latter is also
92 web-based__) you should feel right at home. If you have not, you should be
81 web-based__) you should feel right at home. If you have not, you should be
93 able to learn how to use it in just a few minutes.
82 able to learn how to use it in just a few minutes.
94
83
95 .. __: http://sagenb.org
84 .. __: http://sagenb.org
96
85
97
86
98 Creating and editing notebooks
87 Creating and editing notebooks
99 ------------------------------
88 ------------------------------
100
89
101 You can create new notebooks from the dashboard with the ``New Notebook``
90 You can create new notebooks from the dashboard with the ``New Notebook``
102 button or open existing ones by clicking on their name. Once in a notebook,
91 button or open existing ones by clicking on their name. Once in a notebook,
103 your browser tab will reflect the name of that notebook (prefixed with "IPy:").
92 your browser tab will reflect the name of that notebook (prefixed with "IPy:").
104 The URL for that notebook is not meant to be human-readable and is *not*
93 The URL for that notebook is not meant to be human-readable and is *not*
105 persistent across invocations of the notebook server.
94 persistent across invocations of the notebook server.
106
95
107 You can also drag and drop into the area listing files any python file: it
96 You can also drag and drop into the area listing files any python file: it
108 will be imported into a notebook with the same name (but ``.ipynb`` extension)
97 will be imported into a notebook with the same name (but ``.ipynb`` extension)
109 located in the directory where the notebook server was started. This notebook
98 located in the directory where the notebook server was started. This notebook
110 will consist of a single cell with all the code in the file, which you can
99 will consist of a single cell with all the code in the file, which you can
111 later manually partition into individual cells for gradual execution, add text
100 later manually partition into individual cells for gradual execution, add text
112 and graphics, etc.
101 and graphics, etc.
113
102
114 Workflow and limitations
103 Workflow and limitations
115 ------------------------
104 ------------------------
116
105
117 The normal workflow in a notebook is quite similar to a normal IPython session,
106 The normal workflow in a notebook is quite similar to a normal IPython session,
118 with the difference that you can edit a cell in-place multiple times until you
107 with the difference that you can edit a cell in-place multiple times until you
119 obtain the desired results rather than having to rerun separate scripts with
108 obtain the desired results rather than having to rerun separate scripts with
120 the ``%run`` magic (though magics also work in the notebook). Typically
109 the ``%run`` magic (though magics also work in the notebook). Typically
121 you'll work on a problem in pieces, organizing related pieces into cells and
110 you'll work on a problem in pieces, organizing related pieces into cells and
122 moving forward as previous parts work correctly. This is much more convenient
111 moving forward as previous parts work correctly. This is much more convenient
123 for interactive exploration than breaking up a computation into scripts that
112 for interactive exploration than breaking up a computation into scripts that
124 must be executed together, especially if parts of them take a long time to run
113 must be executed together, especially if parts of them take a long time to run
125 (In the traditional terminal-based IPython, you can use tricks with namespaces
114 (In the traditional terminal-based IPython, you can use tricks with namespaces
126 and ``%run -i`` to achieve this capability, but we think the notebook is a more
115 and ``%run -i`` to achieve this capability, but we think the notebook is a more
127 natural solution for that kind of problem).
116 natural solution for that kind of problem).
128
117
129 The only significant limitation the notebook currently has, compared to the qt
118 The only significant limitation the notebook currently has, compared to the qt
130 console, is that it can not run any code that expects input from the kernel
119 console, is that it can not run any code that expects input from the kernel
131 (such as scripts that call :func:`raw_input`). Very importantly, this means
120 (such as scripts that call :func:`raw_input`). Very importantly, this means
132 that the ``%debug`` magic does *not* work in the notebook! We intend to
121 that the ``%debug`` magic does *not* work in the notebook! We intend to
133 correct this limitation, but in the meantime, there is a way to debug problems
122 correct this limitation, but in the meantime, there is a way to debug problems
134 in the notebook: you can attach a Qt console to your existing notebook kernel,
123 in the notebook: you can attach a Qt console to your existing notebook kernel,
135 and run ``%debug`` from the Qt console. If your notebook is running on a local
124 and run ``%debug`` from the Qt console. If your notebook is running on a local
136 computer (i.e. if you are accessing it via your localhost address at
125 computer (i.e. if you are accessing it via your localhost address at
137 127.0.0.1), you can just type ``%qtconsole`` in the notebook and a Qt console
126 127.0.0.1), you can just type ``%qtconsole`` in the notebook and a Qt console
138 will open up connected to that same kernel.
127 will open up connected to that same kernel.
139
128
140 In general, the notebook server prints the full details of how to connect to
129 In general, the notebook server prints the full details of how to connect to
141 each kernel at the terminal, with lines like:
130 each kernel at the terminal, with lines like:
142
131
143 [IPKernelApp] To connect another client to this kernel, use:
132 [IPKernelApp] To connect another client to this kernel, use:
144 [IPKernelApp] --existing kernel-3bb93edd-6b5a-455c-99c8-3b658f45dde5.json
133 [IPKernelApp] --existing kernel-3bb93edd-6b5a-455c-99c8-3b658f45dde5.json
145
134
146 This is the name of a JSON file that contains all the port and validation
135 This is the name of a JSON file that contains all the port and validation
147 information necessary to connect to the kernel. You can manually start a
136 information necessary to connect to the kernel. You can manually start a
148 qt console with::
137 qt console with::
149
138
150 ipython qtconsole --existing kernel-3bb93edd-6b5a-455c-99c8-3b658f45dde5.json
139 ipython qtconsole --existing kernel-3bb93edd-6b5a-455c-99c8-3b658f45dde5.json
151
140
152 and if you only have a single kernel running, simply typing::
141 and if you only have a single kernel running, simply typing::
153
142
154 ipython qtconsole --existing
143 ipython qtconsole --existing
155
144
156 will automatically find it (it will always find the most recently started
145 will automatically find it (it will always find the most recently started
157 kernel if there is more than one). You can also request this connection data
146 kernel if there is more than one). You can also request this connection data
158 by typing ``%connect_info``; this will print the same file information as well
147 by typing ``%connect_info``; this will print the same file information as well
159 as the content of the JSON data structure it contains.
148 as the content of the JSON data structure it contains.
160
149
161
150
162 Text input
151 Text input
163 ----------
152 ----------
164
153
165 In addition to code cells and the output they produce (such as figures), you
154 In addition to code cells and the output they produce (such as figures), you
166 can also type text not meant for execution. To type text, change the type of a
155 can also type text not meant for execution. To type text, change the type of a
167 cell from ``Code`` to ``Markdown`` by using the button or the :kbd:`Ctrl-m m`
156 cell from ``Code`` to ``Markdown`` by using the button or the :kbd:`Ctrl-m m`
168 keybinding (see below). You can then type any text in Markdown_ syntax, as
157 keybinding (see below). You can then type any text in Markdown_ syntax, as
169 well as mathematical expressions if you use ``$...$`` for inline math or
158 well as mathematical expressions if you use ``$...$`` for inline math or
170 ``$$...$$`` for displayed math.
159 ``$$...$$`` for displayed math.
171
160
172 Exporting a notebook
161 Exporting a notebook
173 --------------------
162 --------------------
174
163
175 If you want to provide others with a static HTML or PDF view of your notebook,
164 If you want to provide others with a static HTML or PDF view of your notebook,
176 use the ``Print`` button. This opens a static view of the document, which you
165 use the ``Print`` button. This opens a static view of the document, which you
177 can print to PDF using your operating system's facilities, or save to a file
166 can print to PDF using your operating system's facilities, or save to a file
178 with your web browser's 'Save' option (note that typically, this will create
167 with your web browser's 'Save' option (note that typically, this will create
179 both an html file *and* a directory called `notebook_name_files` next to it
168 both an html file *and* a directory called `notebook_name_files` next to it
180 that contains all the necessary style information, so if you intend to share
169 that contains all the necessary style information, so if you intend to share
181 this, you must send the directory along with the main html file).
170 this, you must send the directory along with the main html file).
182
171
183 The `Download` button lets you save a notebook file to the Download area
172 The `Download` button lets you save a notebook file to the Download area
184 configured by your web browser (particularly useful if you are running the
173 configured by your web browser (particularly useful if you are running the
185 notebook server on a remote host and need a file locally). The notebook is
174 notebook server on a remote host and need a file locally). The notebook is
186 saved by default with the ``.ipynb`` extension and the files contain JSON data
175 saved by default with the ``.ipynb`` extension and the files contain JSON data
187 that is not meant for human editing or consumption. But you can always export
176 that is not meant for human editing or consumption. But you can always export
188 the input part of a notebook to a plain python script by choosing Python format
177 the input part of a notebook to a plain python script by choosing Python format
189 in the `Download` drop list. This removes all output and saves the text cells
178 in the `Download` drop list. This removes all output and saves the text cells
190 in comment areas.
179 in comment areas.
191
180
192 .. warning::
181 .. warning::
193
182
194 While in simple cases you can roundtrip a notebook to Python, edit the
183 While in simple cases you can roundtrip a notebook to Python, edit the
195 python file and import it back without loss, this is in general *not
184 python file and import it back without loss, this is in general *not
196 guaranteed to work at all*. As the notebook format evolves in complexity,
185 guaranteed to work at all*. As the notebook format evolves in complexity,
197 there will be attributes of the notebook that will not survive a roundtrip
186 there will be attributes of the notebook that will not survive a roundtrip
198 through the Python form. You should think of the Python format as a way to
187 through the Python form. You should think of the Python format as a way to
199 output a script version of a notebook and the import capabilities as a way
188 output a script version of a notebook and the import capabilities as a way
200 to load existing code to get a notebook started. But the Python version is
189 to load existing code to get a notebook started. But the Python version is
201 *not* an alternate notebook format.
190 *not* an alternate notebook format.
202
191
203
192
204 Keyboard use
193 Keyboard use
205 ------------
194 ------------
206
195
207 All actions in the notebook can be achieved with the mouse, but we have also
196 All actions in the notebook can be achieved with the mouse, but we have also
208 added keyboard shortcuts for the most common ones, so that productive use of
197 added keyboard shortcuts for the most common ones, so that productive use of
209 the notebook can be achieved with minimal mouse intervention. The main
198 the notebook can be achieved with minimal mouse intervention. The main
210 key bindings you need to remember are:
199 key bindings you need to remember are:
211
200
212 * :kbd:`Shift-Enter`: execute the current cell (similar to the Qt console),
201 * :kbd:`Shift-Enter`: execute the current cell (similar to the Qt console),
213 show output (if any) and create a new cell below. Note that in the notebook,
202 show output (if any) and create a new cell below. Note that in the notebook,
214 simply using :kbd:`Enter` *never* forces execution, it simply inserts a new
203 simply using :kbd:`Enter` *never* forces execution, it simply inserts a new
215 line in the current cell. Therefore, in the notebook you must always use
204 line in the current cell. Therefore, in the notebook you must always use
216 :kbd:`Shift-Enter` to get execution (or use the mouse and click on the ``Run
205 :kbd:`Shift-Enter` to get execution (or use the mouse and click on the ``Run
217 Selected`` button).
206 Selected`` button).
218
207
219 * :kbd:`Ctrl-Enter`: execute the current cell in "terminal mode", where any
208 * :kbd:`Ctrl-Enter`: execute the current cell in "terminal mode", where any
220 output is shown but the cursor stays in the current cell, whose input
209 output is shown but the cursor stays in the current cell, whose input
221 area is flushed empty. This is convenient to do quick in-place experiments
210 area is flushed empty. This is convenient to do quick in-place experiments
222 or query things like filesystem content without creating additional cells you
211 or query things like filesystem content without creating additional cells you
223 may not want saved in your notebook.
212 may not want saved in your notebook.
224
213
225 * :kbd:`Ctrl-m`: this is the prefix for all other keybindings, which consist
214 * :kbd:`Ctrl-m`: this is the prefix for all other keybindings, which consist
226 of an additional single letter. Type :kbd:`Ctrl-m h` (that is, the sole
215 of an additional single letter. Type :kbd:`Ctrl-m h` (that is, the sole
227 letter :kbd:`h` after :kbd:`Ctrl-m`) and IPython will show you the remaining
216 letter :kbd:`h` after :kbd:`Ctrl-m`) and IPython will show you the remaining
228 available keybindings.
217 available keybindings.
229
218
219 Security
220 ========
221
222 You can protect your notebook server with a *very* simple single-password by
223 setting the :attr:`NotebookApp.password` configurable. It is best to do this in
224 your :file:`ipython_notebook_config.py`, e.g.::
225
226 # Password to use for web authentication
227 c.NotebookApp.password = u'super secret'
228
229 because specifying it on the command-line will make it visible to other
230 processes on your machine with access to :command:`ps`.
231
232 When using a password, it is a good idea to also use SSL, so that your password
233 is not sent in the clear. You can start the notebook to communicate via a secure
234 protocol mode using a self-signed certificate by typing::
235
236 $ ipython notebook --certfile=mycert.pem
237
238 .. note::
239
240 A self-signed certificate can be generated with openssl. For example::
241
242 $ openssl req -x509 -nodes -days 365 -newkey rsa:1024 -keyout mycert.pem -out mycert.pem
243
230
244
231 Notebook document format
245 Notebook document format
232 ========================
246 ========================
233
247
234
248
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