flush output before showing tracebacks

closes  #3700

IPython/kernel/zmq/zmqshell.py

@@ -1,572 +1,575 b''
 """A ZMQ-based subclass of InteractiveShell.
 
 This code is meant to ease the refactoring of the base InteractiveShell into
 something with a cleaner architecture for 2-process use, without actually
 breaking InteractiveShell itself.  So we're doing something a bit ugly, where
 we subclass and override what we want to fix.  Once this is working well, we
 can go back to the base class and refactor the code for a cleaner inheritance
 implementation that doesn't rely on so much monkeypatching.
 
 But this lets us maintain a fully working IPython as we develop the new
 machinery.  This should thus be thought of as scaffolding.
 """
 #-----------------------------------------------------------------------------
 # Imports
 #-----------------------------------------------------------------------------
 from __future__ import print_function
 
 # Stdlib
 import os
 import sys
 import time
 
 # System library imports
 from zmq.eventloop import ioloop
 
 # Our own
 from IPython.core.interactiveshell import (
     InteractiveShell, InteractiveShellABC
 )
 from IPython.core import page
 from IPython.core.autocall import ZMQExitAutocall
 from IPython.core.displaypub import DisplayPublisher
 from IPython.core.error import UsageError
 from IPython.core.magics import MacroToEdit, CodeMagics
 from IPython.core.magic import magics_class, line_magic, Magics
 from IPython.core.payloadpage import install_payload_page
 from IPython.display import display, Javascript
 from IPython.kernel.inprocess.socket import SocketABC
 from IPython.kernel import (
     get_connection_file, get_connection_info, connect_qtconsole
 )
 from IPython.testing.skipdoctest import skip_doctest
 from IPython.utils import openpy
 from IPython.utils.jsonutil import json_clean, encode_images
 from IPython.utils.process import arg_split
 from IPython.utils import py3compat
 from IPython.utils.py3compat import unicode_type
 from IPython.utils.traitlets import Instance, Type, Dict, CBool, CBytes, Any
 from IPython.utils.warn import error
 from IPython.kernel.zmq.displayhook import ZMQShellDisplayHook
 from IPython.kernel.zmq.datapub import ZMQDataPublisher
 from IPython.kernel.zmq.session import extract_header
 from IPython.kernel.comm import CommManager
 from .session import Session
 
 #-----------------------------------------------------------------------------
 # Functions and classes
 #-----------------------------------------------------------------------------
 
 class ZMQDisplayPublisher(DisplayPublisher):
     """A display publisher that publishes data using a ZeroMQ PUB socket."""
 
     session = Instance(Session)
     pub_socket = Instance(SocketABC)
     parent_header = Dict({})
     topic = CBytes(b'display_data')
 
     def set_parent(self, parent):
         """Set the parent for outbound messages."""
         self.parent_header = extract_header(parent)
     
     def _flush_streams(self):
         """flush IO Streams prior to display"""
         sys.stdout.flush()
         sys.stderr.flush()
 
     def publish(self, source, data, metadata=None):
         self._flush_streams()
         if metadata is None:
             metadata = {}
         self._validate_data(source, data, metadata)
         content = {}
         content['source'] = source
         content['data'] = encode_images(data)
         content['metadata'] = metadata
         self.session.send(
             self.pub_socket, u'display_data', json_clean(content),
             parent=self.parent_header, ident=self.topic,
         )
 
     def clear_output(self, wait=False):
         content = dict(wait=wait)
 
         print('\r', file=sys.stdout, end='')
         print('\r', file=sys.stderr, end='')
         self._flush_streams()
         
         self.session.send(
             self.pub_socket, u'clear_output', content,
             parent=self.parent_header, ident=self.topic,
         )
 
 @magics_class
 class KernelMagics(Magics):
     #------------------------------------------------------------------------
     # Magic overrides
     #------------------------------------------------------------------------
     # Once the base class stops inheriting from magic, this code needs to be
     # moved into a separate machinery as well.  For now, at least isolate here
     # the magics which this class needs to implement differently from the base
     # class, or that are unique to it.
 
     @line_magic
     def doctest_mode(self, parameter_s=''):
         """Toggle doctest mode on and off.
 
         This mode is intended to make IPython behave as much as possible like a
         plain Python shell, from the perspective of how its prompts, exceptions
         and output look.  This makes it easy to copy and paste parts of a
         session into doctests.  It does so by:
 
         - Changing the prompts to the classic ``>>>`` ones.
         - Changing the exception reporting mode to 'Plain'.
         - Disabling pretty-printing of output.
 
         Note that IPython also supports the pasting of code snippets that have
         leading '>>>' and '...' prompts in them.  This means that you can paste
         doctests from files or docstrings (even if they have leading
         whitespace), and the code will execute correctly.  You can then use
         '%history -t' to see the translated history; this will give you the
         input after removal of all the leading prompts and whitespace, which
         can be pasted back into an editor.
 
         With these features, you can switch into this mode easily whenever you
         need to do testing and changes to doctests, without having to leave
         your existing IPython session.
         """
 
         from IPython.utils.ipstruct import Struct
 
         # Shorthands
         shell = self.shell
         disp_formatter = self.shell.display_formatter
         ptformatter = disp_formatter.formatters['text/plain']
         # dstore is a data store kept in the instance metadata bag to track any
         # changes we make, so we can undo them later.
         dstore = shell.meta.setdefault('doctest_mode', Struct())
         save_dstore = dstore.setdefault
 
         # save a few values we'll need to recover later
         mode = save_dstore('mode', False)
         save_dstore('rc_pprint', ptformatter.pprint)
         save_dstore('rc_active_types',disp_formatter.active_types)
         save_dstore('xmode', shell.InteractiveTB.mode)
 
         if mode == False:
             # turn on
             ptformatter.pprint = False
             disp_formatter.active_types = ['text/plain']
             shell.magic('xmode Plain')
         else:
             # turn off
             ptformatter.pprint = dstore.rc_pprint
             disp_formatter.active_types = dstore.rc_active_types
             shell.magic("xmode " + dstore.xmode)
 
         # Store new mode and inform on console
         dstore.mode = bool(1-int(mode))
         mode_label = ['OFF','ON'][dstore.mode]
         print('Doctest mode is:', mode_label)
 
         # Send the payload back so that clients can modify their prompt display
         payload = dict(
             source='doctest_mode',
             mode=dstore.mode)
         shell.payload_manager.write_payload(payload)
         
     
     _find_edit_target = CodeMagics._find_edit_target
 
     @skip_doctest
     @line_magic
     def edit(self, parameter_s='', last_call=['','']):
         """Bring up an editor and execute the resulting code.
 
         Usage:
           %edit [options] [args]
 
         %edit runs an external text editor. You will need to set the command for
         this editor via the ``TerminalInteractiveShell.editor`` option in your
         configuration file before it will work.
 
         This command allows you to conveniently edit multi-line code right in
         your IPython session.
 
         If called without arguments, %edit opens up an empty editor with a
         temporary file and will execute the contents of this file when you
         close it (don't forget to save it!).
 
         Options:
 
         -n <number>
           Open the editor at a specified line number. By default, the IPython
           editor hook uses the unix syntax 'editor +N filename', but you can
           configure this by providing your own modified hook if your favorite
           editor supports line-number specifications with a different syntax.
 
         -p
           Call the editor with the same data as the previous time it was used,
           regardless of how long ago (in your current session) it was.
 
         -r
           Use 'raw' input. This option only applies to input taken from the
           user's history.  By default, the 'processed' history is used, so that
           magics are loaded in their transformed version to valid Python.  If
           this option is given, the raw input as typed as the command line is
           used instead.  When you exit the editor, it will be executed by
           IPython's own processor.
 
         Arguments:
 
         If arguments are given, the following possibilites exist:
 
         - The arguments are numbers or pairs of colon-separated numbers (like
           1 4:8 9). These are interpreted as lines of previous input to be
           loaded into the editor. The syntax is the same of the %macro command.
 
         - If the argument doesn't start with a number, it is evaluated as a
           variable and its contents loaded into the editor. You can thus edit
           any string which contains python code (including the result of
           previous edits).
 
         - If the argument is the name of an object (other than a string),
           IPython will try to locate the file where it was defined and open the
           editor at the point where it is defined. You can use ``%edit function``
           to load an editor exactly at the point where 'function' is defined,
           edit it and have the file be executed automatically.
 
           If the object is a macro (see %macro for details), this opens up your
           specified editor with a temporary file containing the macro's data.
           Upon exit, the macro is reloaded with the contents of the file.
 
           Note: opening at an exact line is only supported under Unix, and some
           editors (like kedit and gedit up to Gnome 2.8) do not understand the
           '+NUMBER' parameter necessary for this feature. Good editors like
           (X)Emacs, vi, jed, pico and joe all do.
 
         - If the argument is not found as a variable, IPython will look for a
           file with that name (adding .py if necessary) and load it into the
           editor. It will execute its contents with execfile() when you exit,
           loading any code in the file into your interactive namespace.
 
         Unlike in the terminal, this is designed to use a GUI editor, and we do
         not know when it has closed. So the file you edit will not be
         automatically executed or printed.
 
         Note that %edit is also available through the alias %ed.
         """
 
         opts,args = self.parse_options(parameter_s,'prn:')
 
         try:
             filename, lineno, _ = CodeMagics._find_edit_target(self.shell, args, opts, last_call)
         except MacroToEdit as e:
             # TODO: Implement macro editing over 2 processes.
             print("Macro editing not yet implemented in 2-process model.")
             return
 
         # Make sure we send to the client an absolute path, in case the working
         # directory of client and kernel don't match
         filename = os.path.abspath(filename)
 
         payload = {
             'source' : 'edit_magic',
             'filename' : filename,
             'line_number' : lineno
         }
         self.shell.payload_manager.write_payload(payload)
 
     # A few magics that are adapted to the specifics of using pexpect and a
     # remote terminal
 
     @line_magic
     def clear(self, arg_s):
         """Clear the terminal."""
         if os.name == 'posix':
             self.shell.system("clear")
         else:
             self.shell.system("cls")
 
     if os.name == 'nt':
         # This is the usual name in windows
         cls = line_magic('cls')(clear)
 
     # Terminal pagers won't work over pexpect, but we do have our own pager
 
     @line_magic
     def less(self, arg_s):
         """Show a file through the pager.
 
         Files ending in .py are syntax-highlighted."""
         if not arg_s:
             raise UsageError('Missing filename.')
 
         cont = open(arg_s).read()
         if arg_s.endswith('.py'):
             cont = self.shell.pycolorize(openpy.read_py_file(arg_s, skip_encoding_cookie=False))
         else:
             cont = open(arg_s).read()
         page.page(cont)
 
     more = line_magic('more')(less)
 
     # Man calls a pager, so we also need to redefine it
     if os.name == 'posix':
         @line_magic
         def man(self, arg_s):
             """Find the man page for the given command and display in pager."""
             page.page(self.shell.getoutput('man %s | col -b' % arg_s,
                                            split=False))
 
     @line_magic
     def connect_info(self, arg_s):
         """Print information for connecting other clients to this kernel
         
         It will print the contents of this session's connection file, as well as
         shortcuts for local clients.
         
         In the simplest case, when called from the most recently launched kernel,
         secondary clients can be connected, simply with:
         
         $> ipython <app> --existing
         
         """
         
         from IPython.core.application import BaseIPythonApplication as BaseIPApp
         
         if BaseIPApp.initialized():
             app = BaseIPApp.instance()
             security_dir = app.profile_dir.security_dir
             profile = app.profile
         else:
             profile = 'default'
             security_dir = ''
         
         try:
             connection_file = get_connection_file()
             info = get_connection_info(unpack=False)
         except Exception as e:
             error("Could not get connection info: %r" % e)
             return
         
         # add profile flag for non-default profile
         profile_flag = "--profile %s" % profile if profile != 'default' else ""
         
         # if it's in the security dir, truncate to basename
         if security_dir == os.path.dirname(connection_file):
             connection_file = os.path.basename(connection_file)
         
         
         print (info + '\n')
         print ("Paste the above JSON into a file, and connect with:\n"
             "    $> ipython <app> --existing <file>\n"
             "or, if you are local, you can connect with just:\n"
             "    $> ipython <app> --existing {0} {1}\n"
             "or even just:\n"
             "    $> ipython <app> --existing {1}\n"
             "if this is the most recent IPython session you have started.".format(
             connection_file, profile_flag
             )
         )
 
     @line_magic
     def qtconsole(self, arg_s):
         """Open a qtconsole connected to this kernel.
         
         Useful for connecting a qtconsole to running notebooks, for better
         debugging.
         """
         
         # %qtconsole should imply bind_kernel for engines:
         try:
             from IPython.parallel import bind_kernel
         except ImportError:
             # technically possible, because parallel has higher pyzmq min-version
             pass
         else:
             bind_kernel()
         
         try:
             p = connect_qtconsole(argv=arg_split(arg_s, os.name=='posix'))
         except Exception as e:
             error("Could not start qtconsole: %r" % e)
             return
     
     @line_magic
     def autosave(self, arg_s):
         """Set the autosave interval in the notebook (in seconds).
         
         The default value is 120, or two minutes.
         ``%autosave 0`` will disable autosave.
         
         This magic only has an effect when called from the notebook interface.
         It has no effect when called in a startup file.
         """
         
         try:
             interval = int(arg_s)
         except ValueError:
             raise UsageError("%%autosave requires an integer, got %r" % arg_s)
         
         # javascript wants milliseconds
         milliseconds = 1000 * interval
         display(Javascript("IPython.notebook.set_autosave_interval(%i)" % milliseconds),
             include=['application/javascript']
         )
         if interval:
             print("Autosaving every %i seconds" % interval)
         else:
             print("Autosave disabled")
 
 
 class ZMQInteractiveShell(InteractiveShell):
     """A subclass of InteractiveShell for ZMQ."""
 
     displayhook_class = Type(ZMQShellDisplayHook)
     display_pub_class = Type(ZMQDisplayPublisher)
     data_pub_class = Type(ZMQDataPublisher)
     kernel = Any()
     parent_header = Any()
 
     # Override the traitlet in the parent class, because there's no point using
     # readline for the kernel. Can be removed when the readline code is moved
     # to the terminal frontend.
     colors_force = CBool(True)
     readline_use = CBool(False)
     # autoindent has no meaning in a zmqshell, and attempting to enable it
     # will print a warning in the absence of readline.
     autoindent = CBool(False)
 
     exiter = Instance(ZMQExitAutocall)
     def _exiter_default(self):
         return ZMQExitAutocall(self)
     
     def _exit_now_changed(self, name, old, new):
         """stop eventloop when exit_now fires"""
         if new:
             loop = ioloop.IOLoop.instance()
             loop.add_timeout(time.time()+0.1, loop.stop)
 
     keepkernel_on_exit = None
 
     # Over ZeroMQ, GUI control isn't done with PyOS_InputHook as there is no
     # interactive input being read; we provide event loop support in ipkernel
     @staticmethod
     def enable_gui(gui):
         from .eventloops import enable_gui as real_enable_gui
         try:
             real_enable_gui(gui)
         except ValueError as e:
             raise UsageError("%s" % e)
 
     def init_environment(self):
         """Configure the user's environment.
 
         """
         env = os.environ
         # These two ensure 'ls' produces nice coloring on BSD-derived systems
         env['TERM'] = 'xterm-color'
         env['CLICOLOR'] = '1'
         # Since normal pagers don't work at all (over pexpect we don't have
         # single-key control of the subprocess), try to disable paging in
         # subprocesses as much as possible.
         env['PAGER'] = 'cat'
         env['GIT_PAGER'] = 'cat'
         
         # And install the payload version of page.
         install_payload_page()
 
     def auto_rewrite_input(self, cmd):
         """Called to show the auto-rewritten input for autocall and friends.
 
         FIXME: this payload is currently not correctly processed by the
         frontend.
         """
         new = self.prompt_manager.render('rewrite') + cmd
         payload = dict(
             source='auto_rewrite_input',
             transformed_input=new,
             )
         self.payload_manager.write_payload(payload)
 
     def ask_exit(self):
         """Engage the exit actions."""
         self.exit_now = True
         payload = dict(
             source='ask_exit',
             exit=True,
             keepkernel=self.keepkernel_on_exit,
             )
         self.payload_manager.write_payload(payload)
 
     def _showtraceback(self, etype, evalue, stb):
+        # try to preserve ordering of tracebacks and print statements
+        sys.stdout.flush()
+        sys.stderr.flush()
 
         exc_content = {
             u'traceback' : stb,
             u'ename' : unicode_type(etype.__name__),
             u'evalue' : py3compat.safe_unicode(evalue),
         }
 
         dh = self.displayhook
         # Send exception info over pub socket for other clients than the caller
         # to pick up
         topic = None
         if dh.topic:
             topic = dh.topic.replace(b'pyout', b'pyerr')
         
         exc_msg = dh.session.send(dh.pub_socket, u'pyerr', json_clean(exc_content), dh.parent_header, ident=topic)
 
         # FIXME - Hack: store exception info in shell object.  Right now, the
         # caller is reading this info after the fact, we need to fix this logic
         # to remove this hack.  Even uglier, we need to store the error status
         # here, because in the main loop, the logic that sets it is being
         # skipped because runlines swallows the exceptions.
         exc_content[u'status'] = u'error'
         self._reply_content = exc_content
         # /FIXME
 
         return exc_content
 
     def set_next_input(self, text):
         """Send the specified text to the frontend to be presented at the next
         input cell."""
         payload = dict(
             source='set_next_input',
             text=text
         )
         self.payload_manager.write_payload(payload)
     
     def set_parent(self, parent):
         """Set the parent header for associating output with its triggering input"""
         self.parent_header = parent
         self.displayhook.set_parent(parent)
         self.display_pub.set_parent(parent)
         self.data_pub.set_parent(parent)
         try:
             sys.stdout.set_parent(parent)
         except AttributeError:
             pass
         try:
             sys.stderr.set_parent(parent)
         except AttributeError:
             pass
     
     def get_parent(self):
         return self.parent_header
     
     #-------------------------------------------------------------------------
     # Things related to magics
     #-------------------------------------------------------------------------
 
     def init_magics(self):
         super(ZMQInteractiveShell, self).init_magics()
         self.register_magics(KernelMagics)
         self.magics_manager.register_alias('ed', 'edit')
     
     def init_comms(self):
         self.comm_manager = CommManager(shell=self, parent=self)
         self.configurables.append(self.comm_manager)
 
 
 InteractiveShellABC.register(ZMQInteractiveShell)