Several small fixes during code review with Brian.

- Delete stale ipcluster.py file.

- Add default html target to docs makefile

- Fix up a warning in api doc generation.

- Fix bug with autocall (missing import)

- Fix duplicate options in ipclusterapp.

IPython/core/prefilter.py

@@ -1,995 +1,995 b''
 #!/usr/bin/env python
 # encoding: utf-8
 """
 Prefiltering components.
 
 Prefilters transform user input before it is exec'd by Python.  These
 transforms are used to implement additional syntax such as !ls and %magic.
 
 Authors:
 
 * Brian Granger
 * Fernando Perez
 * Dan Milstein
 * Ville Vainio
 """
 
 #-----------------------------------------------------------------------------
 #  Copyright (C) 2008-2009  The IPython Development Team
 #
 #  Distributed under the terms of the BSD License.  The full license is in
 #  the file COPYING, distributed as part of this software.
 #-----------------------------------------------------------------------------
 
 #-----------------------------------------------------------------------------
 # Imports
 #-----------------------------------------------------------------------------
 
 import __builtin__
 import codeop
 import keyword
 import os
 import re
 import sys
 
 from IPython.core.alias import AliasManager
 from IPython.core.autocall import IPyAutocall
 from IPython.core.component import Component
 from IPython.core.splitinput import split_user_input
 from IPython.core.page import page
 
 from IPython.utils.traitlets import List, Int, Any, Str, CBool, Bool
-from IPython.utils.genutils import make_quoted_expr
+from IPython.utils.genutils import make_quoted_expr, Term
 from IPython.utils.autoattr import auto_attr
 
 #-----------------------------------------------------------------------------
 # Global utilities, errors and constants
 #-----------------------------------------------------------------------------
 
 # Warning, these cannot be changed unless various regular expressions
 # are updated in a number of places.  Not great, but at least we told you.
 ESC_SHELL  = '!'
 ESC_SH_CAP = '!!'
 ESC_HELP   = '?'
 ESC_MAGIC  = '%'
 ESC_QUOTE  = ','
 ESC_QUOTE2 = ';'
 ESC_PAREN  = '/'
 
 
 class PrefilterError(Exception):
     pass
 
 
 # RegExp to identify potential function names
 re_fun_name = re.compile(r'[a-zA-Z_]([a-zA-Z0-9_.]*) *$')
 
 # RegExp to exclude strings with this start from autocalling.  In
 # particular, all binary operators should be excluded, so that if foo is
 # callable, foo OP bar doesn't become foo(OP bar), which is invalid.  The
 # characters '!=()' don't need to be checked for, as the checkPythonChars
 # routine explicitely does so, to catch direct calls and rebindings of
 # existing names.
 
 # Warning: the '-' HAS TO BE AT THE END of the first group, otherwise
 # it affects the rest of the group in square brackets.
 re_exclude_auto = re.compile(r'^[,&^\|\*/\+-]'
                              r'|^is |^not |^in |^and |^or ')
 
 # try to catch also methods for stuff in lists/tuples/dicts: off
 # (experimental). For this to work, the line_split regexp would need
 # to be modified so it wouldn't break things at '['. That line is
 # nasty enough that I shouldn't change it until I can test it _well_.
 #self.re_fun_name = re.compile (r'[a-zA-Z_]([a-zA-Z0-9_.\[\]]*) ?$')
 
 
 # Handler Check Utilities
 def is_shadowed(identifier, ip):
     """Is the given identifier defined in one of the namespaces which shadow
     the alias and magic namespaces?  Note that an identifier is different
     than ifun, because it can not contain a '.' character."""
     # This is much safer than calling ofind, which can change state
     return (identifier in ip.user_ns \
             or identifier in ip.internal_ns \
             or identifier in ip.ns_table['builtin'])
 
 
 #-----------------------------------------------------------------------------
 # The LineInfo class used throughout
 #-----------------------------------------------------------------------------
 
 
 class LineInfo(object):
     """A single line of input and associated info.
 
     Includes the following as properties: 
 
     line
       The original, raw line
     
     continue_prompt
       Is this line a continuation in a sequence of multiline input?
     
     pre
       The initial esc character or whitespace.
     
     pre_char
       The escape character(s) in pre or the empty string if there isn't one.
       Note that '!!' is a possible value for pre_char.  Otherwise it will
       always be a single character.
     
     pre_whitespace
       The leading whitespace from pre if it exists.  If there is a pre_char,
       this is just ''.
     
     ifun
       The 'function part', which is basically the maximal initial sequence
       of valid python identifiers and the '.' character.  This is what is
       checked for alias and magic transformations, used for auto-calling,
       etc.
     
     the_rest
       Everything else on the line.
     """
     def __init__(self, line, continue_prompt):
         self.line            = line
         self.continue_prompt = continue_prompt
         self.pre, self.ifun, self.the_rest = split_user_input(line)
 
         self.pre_char       = self.pre.strip()
         if self.pre_char:
             self.pre_whitespace = '' # No whitespace allowd before esc chars
         else: 
             self.pre_whitespace = self.pre
 
         self._oinfo = None
 
     def ofind(self, ip):
         """Do a full, attribute-walking lookup of the ifun in the various
         namespaces for the given IPython InteractiveShell instance.
 
         Return a dict with keys: found,obj,ospace,ismagic
 
         Note: can cause state changes because of calling getattr, but should
         only be run if autocall is on and if the line hasn't matched any
         other, less dangerous handlers.
 
         Does cache the results of the call, so can be called multiple times
         without worrying about *further* damaging state.
         """
         if not self._oinfo:
             self._oinfo = ip._ofind(self.ifun)
         return self._oinfo
 
     def __str__(self):                                                         
         return "Lineinfo [%s|%s|%s]" %(self.pre,self.ifun,self.the_rest) 
 
 
 #-----------------------------------------------------------------------------
 # Main Prefilter manager
 #-----------------------------------------------------------------------------
 
 
 class PrefilterManager(Component):
     """Main prefilter component.
 
     The IPython prefilter is run on all user input before it is run.  The
     prefilter consumes lines of input and produces transformed lines of 
     input.
 
     The iplementation consists of two phases:
 
     1. Transformers
     2. Checkers and handlers
 
     Over time, we plan on deprecating the checkers and handlers and doing
     everything in the transformers.
 
     The transformers are instances of :class:`PrefilterTransformer` and have
     a single method :meth:`transform` that takes a line and returns a
     transformed line.  The transformation can be accomplished using any
     tool, but our current ones use regular expressions for speed.  We also
     ship :mod:`pyparsing` in :mod:`IPython.external` for use in transformers.
 
     After all the transformers have been run, the line is fed to the checkers,
     which are instances of :class:`PrefilterChecker`.  The line is passed to
     the :meth:`check` method, which either returns `None` or a 
     :class:`PrefilterHandler` instance.  If `None` is returned, the other
     checkers are tried.  If an :class:`PrefilterHandler` instance is returned,
     the line is passed to the :meth:`handle` method of the returned
     handler and no further checkers are tried.
     
     Both transformers and checkers have a `priority` attribute, that determines
     the order in which they are called.  Smaller priorities are tried first.
 
     Both transformers and checkers also have `enabled` attribute, which is
     a boolean that determines if the instance is used.
 
     Users or developers can change the priority or enabled attribute of
     transformers or checkers, but they must call the :meth:`sort_checkers`
     or :meth:`sort_transformers` method after changing the priority.
     """
 
     multi_line_specials = CBool(True, config=True)
 
     def __init__(self, parent, config=None):
         super(PrefilterManager, self).__init__(parent, config=config)
         self.init_transformers()
         self.init_handlers()
         self.init_checkers()
 
     @auto_attr
     def shell(self):
         return Component.get_instances(
             root=self.root,
             klass='IPython.core.iplib.InteractiveShell')[0]
 
     #-------------------------------------------------------------------------
     # API for managing transformers
     #-------------------------------------------------------------------------
 
     def init_transformers(self):
         """Create the default transformers."""
         self._transformers = []
         for transformer_cls in _default_transformers:
             transformer_cls(self, config=self.config)
 
     def sort_transformers(self):
         """Sort the transformers by priority.
 
         This must be called after the priority of a transformer is changed.
         The :meth:`register_transformer` method calls this automatically.
         """
         self._transformers.sort(cmp=lambda x,y: x.priority-y.priority)
 
     @property
     def transformers(self):
         """Return a list of checkers, sorted by priority."""
         return self._transformers
 
     def register_transformer(self, transformer):
         """Register a transformer instance."""
         if transformer not in self._transformers:
             self._transformers.append(transformer)
             self.sort_transformers()
 
     def unregister_transformer(self, transformer):
         """Unregister a transformer instance."""
         if transformer in self._transformers:
             self._transformers.remove(transformer)
 
     #-------------------------------------------------------------------------
     # API for managing checkers
     #-------------------------------------------------------------------------
 
     def init_checkers(self):
         """Create the default checkers."""
         self._checkers = []
         for checker in _default_checkers:
             checker(self, config=self.config)
 
     def sort_checkers(self):
         """Sort the checkers by priority.
 
         This must be called after the priority of a checker is changed.
         The :meth:`register_checker` method calls this automatically.
         """
         self._checkers.sort(cmp=lambda x,y: x.priority-y.priority)
 
     @property
     def checkers(self):
         """Return a list of checkers, sorted by priority."""
         return self._checkers
 
     def register_checker(self, checker):
         """Register a checker instance."""
         if checker not in self._checkers:
             self._checkers.append(checker)
             self.sort_checkers()
 
     def unregister_checker(self, checker):
         """Unregister a checker instance."""
         if checker in self._checkers:
             self._checkers.remove(checker)
 
     #-------------------------------------------------------------------------
     # API for managing checkers
     #-------------------------------------------------------------------------
 
     def init_handlers(self):
         """Create the default handlers."""
         self._handlers = {}
         self._esc_handlers = {}
         for handler in _default_handlers:
             handler(self, config=self.config)
 
     @property
     def handlers(self):
         """Return a dict of all the handlers."""
         return self._handlers
 
     def register_handler(self, name, handler, esc_strings):
         """Register a handler instance by name with esc_strings."""
         self._handlers[name] = handler
         for esc_str in esc_strings:
             self._esc_handlers[esc_str] = handler
 
     def unregister_handler(self, name, handler, esc_strings):
         """Unregister a handler instance by name with esc_strings."""
         try:
             del self._handlers[name]
         except KeyError:
             pass
         for esc_str in esc_strings:
             h = self._esc_handlers.get(esc_str)
             if h is handler:
                 del self._esc_handlers[esc_str]
 
     def get_handler_by_name(self, name):
         """Get a handler by its name."""
         return self._handlers.get(name)
 
     def get_handler_by_esc(self, esc_str):
         """Get a handler by its escape string."""
         return self._esc_handlers.get(esc_str)
 
     #-------------------------------------------------------------------------
     # Main prefiltering API
     #-------------------------------------------------------------------------
 
     def prefilter_line_info(self, line_info):
         """Prefilter a line that has been converted to a LineInfo object.
 
         This implements the checker/handler part of the prefilter pipe.
         """
         # print "prefilter_line_info: ", line_info
         handler = self.find_handler(line_info)
         return handler.handle(line_info)
 
     def find_handler(self, line_info):
         """Find a handler for the line_info by trying checkers."""
         for checker in self.checkers:
             if checker.enabled:
                 handler = checker.check(line_info)
                 if handler:
                     return handler
         return self.get_handler_by_name('normal')
 
     def transform_line(self, line, continue_prompt):
         """Calls the enabled transformers in order of increasing priority."""
         for transformer in self.transformers:
             if transformer.enabled:
                 line = transformer.transform(line, continue_prompt)
         return line
 
     def prefilter_line(self, line, continue_prompt):
         """Prefilter a single input line as text.
 
         This method prefilters a single line of text by calling the
         transformers and then the checkers/handlers.
         """
 
         # print "prefilter_line: ", line, continue_prompt
         # All handlers *must* return a value, even if it's blank ('').
 
         # Lines are NOT logged here. Handlers should process the line as
         # needed, update the cache AND log it (so that the input cache array
         # stays synced).
 
         # save the line away in case we crash, so the post-mortem handler can
         # record it
         self.shell._last_input_line = line
 
         if not line:
             # Return immediately on purely empty lines, so that if the user
             # previously typed some whitespace that started a continuation
             # prompt, he can break out of that loop with just an empty line.
             # This is how the default python prompt works.
 
             # Only return if the accumulated input buffer was just whitespace!
             if ''.join(self.shell.buffer).isspace():
                 self.shell.buffer[:] = []
             return ''
 
         # At this point, we invoke our transformers.
         if not continue_prompt or (continue_prompt and self.multi_line_specials):
             line = self.transform_line(line, continue_prompt)
 
         # Now we compute line_info for the checkers and handlers
         line_info = LineInfo(line, continue_prompt)
         
         # the input history needs to track even empty lines
         stripped = line.strip()
 
         normal_handler = self.get_handler_by_name('normal')
         if not stripped:
             if not continue_prompt:
                 self.shell.outputcache.prompt_count -= 1
 
             return normal_handler.handle(line_info)
 
         # special handlers are only allowed for single line statements
         if continue_prompt and not self.multi_line_specials:
             return normal_handler.handle(line_info)
 
         prefiltered = self.prefilter_line_info(line_info)
         # print "prefiltered line: %r" % prefiltered
         return prefiltered
 
     def prefilter_lines(self, lines, continue_prompt):
         """Prefilter multiple input lines of text.
 
         This is the main entry point for prefiltering multiple lines of
         input.  This simply calls :meth:`prefilter_line` for each line of
         input.
 
         This covers cases where there are multiple lines in the user entry,
         which is the case when the user goes back to a multiline history
         entry and presses enter.
         """
         out = []
         for line in lines.rstrip('\n').split('\n'):
             out.append(self.prefilter_line(line, continue_prompt))
         return '\n'.join(out)
 
 
 #-----------------------------------------------------------------------------
 # Prefilter transformers
 #-----------------------------------------------------------------------------
 
 
 class PrefilterTransformer(Component):
     """Transform a line of user input."""
 
     priority = Int(100, config=True)
     shell = Any
     prefilter_manager = Any
     enabled = Bool(True, config=True)
 
     def __init__(self, parent, config=None):
         super(PrefilterTransformer, self).__init__(parent, config=config)
         self.prefilter_manager.register_transformer(self)
 
     @auto_attr
     def shell(self):
         return Component.get_instances(
             root=self.root,
             klass='IPython.core.iplib.InteractiveShell')[0]
 
     @auto_attr
     def prefilter_manager(self):
         return PrefilterManager.get_instances(root=self.root)[0]
 
     def transform(self, line, continue_prompt):
         """Transform a line, returning the new one."""
         return None
 
     def __repr__(self):
         return "<%s(priority=%r, enabled=%r)>" % (
             self.__class__.__name__, self.priority, self.enabled)
 
 
 _assign_system_re = re.compile(r'(?P<lhs>(\s*)([\w\.]+)((\s*,\s*[\w\.]+)*))'
                                r'\s*=\s*!(?P<cmd>.*)')
 
 
 class AssignSystemTransformer(PrefilterTransformer):
     """Handle the `files = !ls` syntax."""
 
     priority = Int(100, config=True)
 
     def transform(self, line, continue_prompt):
         m = _assign_system_re.match(line)
         if m is not None:
             cmd = m.group('cmd')
             lhs = m.group('lhs')
             expr = make_quoted_expr("sc -l =%s" % cmd)
             new_line = '%s = get_ipython().magic(%s)' % (lhs, expr)
             return new_line
         return line
 
 
 _assign_magic_re = re.compile(r'(?P<lhs>(\s*)([\w\.]+)((\s*,\s*[\w\.]+)*))'
                                r'\s*=\s*%(?P<cmd>.*)')
 
 class AssignMagicTransformer(PrefilterTransformer):
     """Handle the `a = %who` syntax."""
 
     priority = Int(200, config=True)
 
     def transform(self, line, continue_prompt):
         m = _assign_magic_re.match(line)
         if m is not None:
             cmd = m.group('cmd')
             lhs = m.group('lhs')
             expr = make_quoted_expr(cmd)
             new_line = '%s = get_ipython().magic(%s)' % (lhs, expr)
             return new_line
         return line
 
 
 #-----------------------------------------------------------------------------
 # Prefilter checkers
 #-----------------------------------------------------------------------------
 
 
 class PrefilterChecker(Component):
     """Inspect an input line and return a handler for that line."""
 
     priority = Int(100, config=True)
     shell = Any
     prefilter_manager = Any
     enabled = Bool(True, config=True)
 
     def __init__(self, parent, config=None):
         super(PrefilterChecker, self).__init__(parent, config=config)
         self.prefilter_manager.register_checker(self)
 
     @auto_attr
     def shell(self):
         return Component.get_instances(
             root=self.root,
             klass='IPython.core.iplib.InteractiveShell')[0]
 
     @auto_attr
     def prefilter_manager(self):
         return PrefilterManager.get_instances(root=self.root)[0]
 
     def check(self, line_info):
         """Inspect line_info and return a handler instance or None."""
         return None
 
     def __repr__(self):
         return "<%s(priority=%r, enabled=%r)>" % (
             self.__class__.__name__, self.priority, self.enabled)
 
 
 class EmacsChecker(PrefilterChecker):
 
     priority = Int(100, config=True)
     enabled = Bool(False, config=True)
 
     def check(self, line_info):
         "Emacs ipython-mode tags certain input lines."
         if line_info.line.endswith('# PYTHON-MODE'):
             return self.prefilter_manager.get_handler_by_name('emacs')
         else:
             return None
 
 
 class ShellEscapeChecker(PrefilterChecker):
 
     priority = Int(200, config=True)
 
     def check(self, line_info):
         if line_info.line.lstrip().startswith(ESC_SHELL):
             return self.prefilter_manager.get_handler_by_name('shell')
 
 
 class IPyAutocallChecker(PrefilterChecker):
 
     priority = Int(300, config=True)
 
     def check(self, line_info):
         "Instances of IPyAutocall in user_ns get autocalled immediately"
         obj = self.shell.user_ns.get(line_info.ifun, None)
         if isinstance(obj, IPyAutocall):
             obj.set_ip(self.shell)
             return self.prefilter_manager.get_handler_by_name('auto')
         else:
             return None
 
 
 class MultiLineMagicChecker(PrefilterChecker):
 
     priority = Int(400, config=True)
 
     def check(self, line_info):
         "Allow ! and !! in multi-line statements if multi_line_specials is on"
         # Note that this one of the only places we check the first character of
         # ifun and *not* the pre_char.  Also note that the below test matches
         # both ! and !!.    
         if line_info.continue_prompt \
             and self.prefilter_manager.multi_line_specials:
                 if line_info.ifun.startswith(ESC_MAGIC):
                     return self.prefilter_manager.get_handler_by_name('magic')
         else:
             return None
 
 
 class EscCharsChecker(PrefilterChecker):
 
     priority = Int(500, config=True)
 
     def check(self, line_info):
         """Check for escape character and return either a handler to handle it,
         or None if there is no escape char."""
         if line_info.line[-1] == ESC_HELP \
                and line_info.pre_char != ESC_SHELL \
                and line_info.pre_char != ESC_SH_CAP:
             # the ? can be at the end, but *not* for either kind of shell escape,
             # because a ? can be a vaild final char in a shell cmd
             return self.prefilter_manager.get_handler_by_name('help')
         else:
             # This returns None like it should if no handler exists
             return self.prefilter_manager.get_handler_by_esc(line_info.pre_char)
 
 
 class AssignmentChecker(PrefilterChecker):
 
     priority = Int(600, config=True)
 
     def check(self, line_info):
         """Check to see if user is assigning to a var for the first time, in
         which case we want to avoid any sort of automagic / autocall games.
     
         This allows users to assign to either alias or magic names true python
         variables (the magic/alias systems always take second seat to true
         python code).  E.g. ls='hi', or ls,that=1,2"""
         if line_info.the_rest:
             if line_info.the_rest[0] in '=,':
                 return self.prefilter_manager.get_handler_by_name('normal')
         else:
             return None
 
 
 class AutoMagicChecker(PrefilterChecker):
 
     priority = Int(700, config=True)
 
     def check(self, line_info):
         """If the ifun is magic, and automagic is on, run it.  Note: normal,
         non-auto magic would already have been triggered via '%' in
         check_esc_chars. This just checks for automagic.  Also, before
         triggering the magic handler, make sure that there is nothing in the
         user namespace which could shadow it."""
         if not self.shell.automagic or not hasattr(self.shell,'magic_'+line_info.ifun):
             return None
 
         # We have a likely magic method.  Make sure we should actually call it.
         if line_info.continue_prompt and not self.shell.multi_line_specials:
             return None
 
         head = line_info.ifun.split('.',1)[0]
         if is_shadowed(head, self.shell):
             return None
 
         return self.prefilter_manager.get_handler_by_name('magic')
 
 
 class AliasChecker(PrefilterChecker):
 
     priority = Int(800, config=True)
 
     @auto_attr
     def alias_manager(self):
         return AliasManager.get_instances(root=self.root)[0]
 
     def check(self, line_info):
         "Check if the initital identifier on the line is an alias."
         # Note: aliases can not contain '.'
         head = line_info.ifun.split('.',1)[0]
         if line_info.ifun not in self.alias_manager \
                or head not in self.alias_manager \
                or is_shadowed(head, self.shell):
             return None
 
         return self.prefilter_manager.get_handler_by_name('alias')
 
 
 class PythonOpsChecker(PrefilterChecker):
 
     priority = Int(900, config=True)
 
     def check(self, line_info):
         """If the 'rest' of the line begins with a function call or pretty much
         any python operator, we should simply execute the line (regardless of
         whether or not there's a possible autocall expansion).  This avoids
         spurious (and very confusing) geattr() accesses."""
         if line_info.the_rest and line_info.the_rest[0] in '!=()<>,+*/%^&|':
             return self.prefilter_manager.get_handler_by_name('normal')
         else:
             return None
 
 
 class AutocallChecker(PrefilterChecker):
 
     priority = Int(1000, config=True)
 
     def check(self, line_info):
         "Check if the initial word/function is callable and autocall is on."
         if not self.shell.autocall:
             return None
 
         oinfo = line_info.ofind(self.shell) # This can mutate state via getattr
         if not oinfo['found']:
             return None
         
         if callable(oinfo['obj']) \
                and (not re_exclude_auto.match(line_info.the_rest)) \
                and re_fun_name.match(line_info.ifun):
             return self.prefilter_manager.get_handler_by_name('auto')
         else:
             return None
 
 
 #-----------------------------------------------------------------------------
 # Prefilter handlers
 #-----------------------------------------------------------------------------
 
 
 class PrefilterHandler(Component):
 
     handler_name = Str('normal')
     esc_strings = List([])
     shell = Any
     prefilter_manager = Any
 
     def __init__(self, parent, config=None):
         super(PrefilterHandler, self).__init__(parent, config=config)
         self.prefilter_manager.register_handler(
             self.handler_name,
             self,
             self.esc_strings
         )
 
     @auto_attr
     def shell(self):
         return Component.get_instances(
             root=self.root,
             klass='IPython.core.iplib.InteractiveShell')[0]
 
     @auto_attr
     def prefilter_manager(self):
         return PrefilterManager.get_instances(root=self.root)[0]
 
     def handle(self, line_info):
         # print "normal: ", line_info
         """Handle normal input lines. Use as a template for handlers."""
 
         # With autoindent on, we need some way to exit the input loop, and I
         # don't want to force the user to have to backspace all the way to
         # clear the line.  The rule will be in this case, that either two
         # lines of pure whitespace in a row, or a line of pure whitespace but
         # of a size different to the indent level, will exit the input loop.
         line = line_info.line
         continue_prompt = line_info.continue_prompt
 
         if (continue_prompt and self.shell.autoindent and line.isspace() and
             (0 < abs(len(line) - self.shell.indent_current_nsp) <= 2 or
              (self.shell.buffer[-1]).isspace() )):
             line = ''
 
         self.shell.log(line, line, continue_prompt)
         return line
 
     def __str__(self):
         return "<%s(name=%s)>" % (self.__class__.__name__, self.handler_name)
 
 
 class AliasHandler(PrefilterHandler):
 
     handler_name = Str('alias')
 
     @auto_attr
     def alias_manager(self):
         return AliasManager.get_instances(root=self.root)[0]
 
     def handle(self, line_info):
         """Handle alias input lines. """
         transformed = self.alias_manager.expand_aliases(line_info.ifun,line_info.the_rest)
         # pre is needed, because it carries the leading whitespace.  Otherwise
         # aliases won't work in indented sections.
         line_out = '%sget_ipython().system(%s)' % (line_info.pre_whitespace,
                                          make_quoted_expr(transformed))
         
         self.shell.log(line_info.line, line_out, line_info.continue_prompt)
         return line_out
 
 
 class ShellEscapeHandler(PrefilterHandler):
 
     handler_name = Str('shell')
     esc_strings = List([ESC_SHELL, ESC_SH_CAP])
 
     def handle(self, line_info):
         """Execute the line in a shell, empty return value"""
         magic_handler = self.prefilter_manager.get_handler_by_name('magic')
 
         line = line_info.line
         if line.lstrip().startswith(ESC_SH_CAP):
             # rewrite LineInfo's line, ifun and the_rest to properly hold the
             # call to %sx and the actual command to be executed, so
             # handle_magic can work correctly.  Note that this works even if
             # the line is indented, so it handles multi_line_specials
             # properly.
             new_rest = line.lstrip()[2:]
             line_info.line = '%ssx %s' % (ESC_MAGIC, new_rest)
             line_info.ifun = 'sx'
             line_info.the_rest = new_rest
             return magic_handler.handle(line_info)
         else:
             cmd = line.lstrip().lstrip(ESC_SHELL)
             line_out = '%sget_ipython().system(%s)' % (line_info.pre_whitespace,
                                              make_quoted_expr(cmd))
         # update cache/log and return
         self.shell.log(line, line_out, line_info.continue_prompt)
         return line_out
 
 
 class MagicHandler(PrefilterHandler):
 
     handler_name = Str('magic')
     esc_strings = List([ESC_MAGIC])
 
     def handle(self, line_info):
         """Execute magic functions."""
         ifun    = line_info.ifun
         the_rest = line_info.the_rest
         cmd = '%sget_ipython().magic(%s)' % (line_info.pre_whitespace,
                                    make_quoted_expr(ifun + " " + the_rest))
         self.shell.log(line_info.line, cmd, line_info.continue_prompt)
         return cmd
 
 
 class AutoHandler(PrefilterHandler):
 
     handler_name = Str('auto')
     esc_strings = List([ESC_PAREN, ESC_QUOTE, ESC_QUOTE2])
 
     def handle(self, line_info):
         """Hande lines which can be auto-executed, quoting if requested."""
         line    = line_info.line
         ifun    = line_info.ifun
         the_rest = line_info.the_rest
         pre     = line_info.pre
         continue_prompt = line_info.continue_prompt
         obj = line_info.ofind(self)['obj']
 
         #print 'pre <%s> ifun <%s> rest <%s>' % (pre,ifun,the_rest)  # dbg
 
         # This should only be active for single-line input!
         if continue_prompt:
             self.log(line,line,continue_prompt)
             return line
 
         force_auto = isinstance(obj, IPyAutocall)
         auto_rewrite = True
         
         if pre == ESC_QUOTE:
             # Auto-quote splitting on whitespace
             newcmd = '%s("%s")' % (ifun,'", "'.join(the_rest.split()) )
         elif pre == ESC_QUOTE2:
             # Auto-quote whole string
             newcmd = '%s("%s")' % (ifun,the_rest)
         elif pre == ESC_PAREN:
             newcmd = '%s(%s)' % (ifun,",".join(the_rest.split()))
         else:
             # Auto-paren.
             # We only apply it to argument-less calls if the autocall
             # parameter is set to 2.  We only need to check that autocall is <
             # 2, since this function isn't called unless it's at least 1.
             if not the_rest and (self.shell.autocall < 2) and not force_auto:
                 newcmd = '%s %s' % (ifun,the_rest)
                 auto_rewrite = False
             else:
                 if not force_auto and the_rest.startswith('['):
                     if hasattr(obj,'__getitem__'):
                         # Don't autocall in this case: item access for an object
                         # which is BOTH callable and implements __getitem__.
                         newcmd = '%s %s' % (ifun,the_rest)
                         auto_rewrite = False
                     else:
                         # if the object doesn't support [] access, go ahead and
                         # autocall
                         newcmd = '%s(%s)' % (ifun.rstrip(),the_rest)
                 elif the_rest.endswith(';'):
                     newcmd = '%s(%s);' % (ifun.rstrip(),the_rest[:-1])
                 else:
                     newcmd = '%s(%s)' % (ifun.rstrip(), the_rest)
 
         if auto_rewrite:
             rw = self.shell.outputcache.prompt1.auto_rewrite() + newcmd
             
             try:
                 # plain ascii works better w/ pyreadline, on some machines, so
                 # we use it and only print uncolored rewrite if we have unicode
                 rw = str(rw)
                 print >>Term.cout, rw
             except UnicodeEncodeError:
                 print "-------------->" + newcmd
             
         # log what is now valid Python, not the actual user input (without the
         # final newline)
         self.shell.log(line,newcmd,continue_prompt)
         return newcmd
 
 
 class HelpHandler(PrefilterHandler):
 
     handler_name = Str('help')
     esc_strings = List([ESC_HELP])
 
     def handle(self, line_info):
         """Try to get some help for the object.
 
         obj? or ?obj   -> basic information.
         obj?? or ??obj -> more details.
         """
         normal_handler = self.prefilter_manager.get_handler_by_name('normal')
         line = line_info.line
         # We need to make sure that we don't process lines which would be
         # otherwise valid python, such as "x=1 # what?"
         try:
             codeop.compile_command(line)
         except SyntaxError:
             # We should only handle as help stuff which is NOT valid syntax
             if line[0]==ESC_HELP:
                 line = line[1:]
             elif line[-1]==ESC_HELP:
                 line = line[:-1]
             self.shell.log(line, '#?'+line, line_info.continue_prompt)
             if line:
                 #print 'line:<%r>' % line  # dbg
                 self.shell.magic_pinfo(line)
             else:
                 page(self.shell.usage, screen_lines=self.shell.usable_screen_length)
             return '' # Empty string is needed here!
         except:
             raise
             # Pass any other exceptions through to the normal handler
             return normal_handler.handle(line_info)
         else:
             raise
             # If the code compiles ok, we should handle it normally
             return normal_handler.handle(line_info)
 
 
 class EmacsHandler(PrefilterHandler):
 
     handler_name = Str('emacs')
     esc_strings = List([])
 
     def handle(self, line_info):
         """Handle input lines marked by python-mode."""
 
         # Currently, nothing is done.  Later more functionality can be added
         # here if needed.
 
         # The input cache shouldn't be updated
         return line_info.line
 
 
 #-----------------------------------------------------------------------------
 # Defaults
 #-----------------------------------------------------------------------------
 
 
 _default_transformers = [
     AssignSystemTransformer,
     AssignMagicTransformer
 ]
 
 _default_checkers = [
     EmacsChecker,
     ShellEscapeChecker,
     IPyAutocallChecker,
     MultiLineMagicChecker,
     EscCharsChecker,
     AssignmentChecker,
     AutoMagicChecker,
     AliasChecker,
     PythonOpsChecker,
     AutocallChecker
 ]
 
 _default_handlers = [
     PrefilterHandler,
     AliasHandler,
     ShellEscapeHandler,
     MagicHandler,
     AutoHandler,
     HelpHandler,
     EmacsHandler
 ]
 

IPython/kernel/ipclusterapp.py

@@ -1,457 +1,455 b''
 #!/usr/bin/env python
 # encoding: utf-8
 """
 The ipcluster application.
 """
 
 #-----------------------------------------------------------------------------
 #  Copyright (C) 2008-2009  The IPython Development Team
 #
 #  Distributed under the terms of the BSD License.  The full license is in
 #  the file COPYING, distributed as part of this software.
 #-----------------------------------------------------------------------------
 
 #-----------------------------------------------------------------------------
 # Imports
 #-----------------------------------------------------------------------------
 
 import logging
 import os
 import signal
 import sys
 
 if os.name=='posix':
     from twisted.scripts._twistd_unix import daemonize
 
 from IPython.core import release
 from IPython.external import argparse
 from IPython.config.loader import ArgParseConfigLoader, NoConfigDefault
 from IPython.utils.importstring import import_item
 
 from IPython.kernel.clusterdir import (
     ApplicationWithClusterDir, ClusterDirError, PIDFileError
 )
 
 from twisted.internet import reactor, defer
 from twisted.python import log, failure
 
 
 #-----------------------------------------------------------------------------
 # The ipcluster application
 #-----------------------------------------------------------------------------
 
 
 # Exit codes for ipcluster
 
 # This will be the exit code if the ipcluster appears to be running because
 # a .pid file exists
 ALREADY_STARTED = 10
 
 # This will be the exit code if ipcluster stop is run, but there is not .pid
 # file to be found.
 ALREADY_STOPPED = 11
 
 
 class IPClusterCLLoader(ArgParseConfigLoader):
 
     def _add_arguments(self):
         # This has all the common options that all subcommands use
         parent_parser1 = argparse.ArgumentParser(add_help=False)
         parent_parser1.add_argument('--ipython-dir', 
             dest='Global.ipython_dir',type=unicode,
             help='Set to override default location of Global.ipython_dir.',
             default=NoConfigDefault,
             metavar='Global.ipython_dir')
         parent_parser1.add_argument('--log-level',
             dest="Global.log_level",type=int,
             help='Set the log level (0,10,20,30,40,50).  Default is 30.',
             default=NoConfigDefault,
             metavar='Global.log_level')
 
         # This has all the common options that other subcommands use
         parent_parser2 = argparse.ArgumentParser(add_help=False)
         parent_parser2.add_argument('-p','--profile',
             dest='Global.profile',type=unicode,
-            default=NoConfigDefault,
             help='The string name of the profile to be used. This determines '
             'the name of the cluster dir as: cluster_<profile>. The default profile '
             'is named "default".  The cluster directory is resolve this way '
             'if the --cluster-dir option is not used.',
             default=NoConfigDefault,
             metavar='Global.profile')
         parent_parser2.add_argument('--cluster-dir',
             dest='Global.cluster_dir',type=unicode,
-            default=NoConfigDefault,
             help='Set the cluster dir. This overrides the logic used by the '
             '--profile option.',
             default=NoConfigDefault,
             metavar='Global.cluster_dir'),
         parent_parser2.add_argument('--work-dir',
             dest='Global.work_dir',type=unicode,
             help='Set the working dir for the process.',
             default=NoConfigDefault,
             metavar='Global.work_dir')
         parent_parser2.add_argument('--log-to-file',
             action='store_true', dest='Global.log_to_file', 
             default=NoConfigDefault,
             help='Log to a file in the log directory (default is stdout)'
         )
 
         subparsers = self.parser.add_subparsers(
             dest='Global.subcommand',
             title='ipcluster subcommands',
             description='ipcluster has a variety of subcommands. '
             'The general way of running ipcluster is "ipcluster <cmd> '
             ' [options]""',
             help='For more help, type "ipcluster <cmd> -h"')
 
         parser_list = subparsers.add_parser(
             'list',
             help='List all clusters in cwd and ipython_dir.',
             parents=[parent_parser1]
         )
 
         parser_create = subparsers.add_parser(
             'create',
             help='Create a new cluster directory.',
             parents=[parent_parser1, parent_parser2] 
         )
         parser_create.add_argument(
             '--reset-config',
             dest='Global.reset_config', action='store_true',
             default=NoConfigDefault,
             help='Recopy the default config files to the cluster directory. '
             'You will loose any modifications you have made to these files.'
         )
 
         parser_start = subparsers.add_parser(
             'start',
             help='Start a cluster.',
             parents=[parent_parser1, parent_parser2]
         )
         parser_start.add_argument(
             '-n', '--number',
             type=int, dest='Global.n',
             default=NoConfigDefault,
             help='The number of engines to start.',
             metavar='Global.n'
         )
         parser_start.add_argument('--clean-logs',
             dest='Global.clean_logs', action='store_true',
             help='Delete old log flies before starting.',
             default=NoConfigDefault
         )
         parser_start.add_argument('--no-clean-logs',
             dest='Global.clean_logs', action='store_false',
             help="Don't delete old log flies before starting.",
             default=NoConfigDefault
         )
         parser_start.add_argument('--daemon',
             dest='Global.daemonize', action='store_true',
             help='Daemonize the ipcluster program. This implies --log-to-file',
             default=NoConfigDefault
         )
         parser_start.add_argument('--no-daemon',
             dest='Global.daemonize', action='store_false',
             help="Dont't daemonize the ipcluster program.",
             default=NoConfigDefault
         )
 
         parser_start = subparsers.add_parser(
             'stop',
             help='Stop a cluster.',
             parents=[parent_parser1, parent_parser2]
         )
         parser_start.add_argument('--signal',
             dest='Global.signal', type=int,
             help="The signal number to use in stopping the cluster (default=2).",
             metavar="Global.signal",
             default=NoConfigDefault
         )
 
 
 default_config_file_name = u'ipcluster_config.py'
 
 
 class IPClusterApp(ApplicationWithClusterDir):
 
     name = u'ipcluster'
     description = 'Start an IPython cluster (controller and engines).'
     config_file_name = default_config_file_name
     default_log_level = logging.INFO
     auto_create_cluster_dir = False
 
     def create_default_config(self):
         super(IPClusterApp, self).create_default_config()
         self.default_config.Global.controller_launcher = \
             'IPython.kernel.launcher.LocalControllerLauncher'
         self.default_config.Global.engine_launcher = \
             'IPython.kernel.launcher.LocalEngineSetLauncher'
         self.default_config.Global.n = 2
         self.default_config.Global.reset_config = False
         self.default_config.Global.clean_logs = True
         self.default_config.Global.signal = 2
         self.default_config.Global.daemonize = False
 
     def create_command_line_config(self):
         """Create and return a command line config loader."""
         return IPClusterCLLoader(
             description=self.description, 
             version=release.version
         )
 
     def find_resources(self):
         subcommand = self.command_line_config.Global.subcommand
         if subcommand=='list':
             self.list_cluster_dirs()
             # Exit immediately because there is nothing left to do.
             self.exit()
         elif subcommand=='create':
             self.auto_create_cluster_dir = True
             super(IPClusterApp, self).find_resources()
         elif subcommand=='start' or subcommand=='stop':
             self.auto_create_cluster_dir = False
             try:
                 super(IPClusterApp, self).find_resources()
             except ClusterDirError:
                 raise ClusterDirError(
                     "Could not find a cluster directory. A cluster dir must "
                     "be created before running 'ipcluster start'.  Do "
                     "'ipcluster create -h' or 'ipcluster list -h' for more "
                     "information about creating and listing cluster dirs."
                 )
 
     def list_cluster_dirs(self):
         # Find the search paths
         cluster_dir_paths = os.environ.get('IPCLUSTER_DIR_PATH','')
         if cluster_dir_paths:
             cluster_dir_paths = cluster_dir_paths.split(':')
         else:
             cluster_dir_paths = []
         try:
             ipython_dir = self.command_line_config.Global.ipython_dir
         except AttributeError:
             ipython_dir = self.default_config.Global.ipython_dir
         paths = [os.getcwd(), ipython_dir] + \
             cluster_dir_paths
         paths = list(set(paths))
 
         self.log.info('Searching for cluster dirs in paths: %r' % paths)
         for path in paths:
             files = os.listdir(path)
             for f in files:
                 full_path = os.path.join(path, f)
                 if os.path.isdir(full_path) and f.startswith('cluster_'):
                     profile = full_path.split('_')[-1]
                     start_cmd = '"ipcluster start -n 4 -p %s"' % profile
                     print start_cmd + " ==> " + full_path
 
     def pre_construct(self):
         # IPClusterApp.pre_construct() is where we cd to the working directory.
         super(IPClusterApp, self).pre_construct()
         config = self.master_config
         try:
             daemon = config.Global.daemonize
             if daemon:
                 config.Global.log_to_file = True
         except AttributeError:
             pass
 
     def construct(self):
         config = self.master_config
         if config.Global.subcommand=='list':
             pass
         elif config.Global.subcommand=='create':
             self.log.info('Copying default config files to cluster directory '
             '[overwrite=%r]' % (config.Global.reset_config,))
             self.cluster_dir_obj.copy_all_config_files(overwrite=config.Global.reset_config)
         elif config.Global.subcommand=='start':
             self.start_logging()
             reactor.callWhenRunning(self.start_launchers)
 
     def start_launchers(self):
         config = self.master_config
 
         # Create the launchers. In both bases, we set the work_dir of
         # the launcher to the cluster_dir. This is where the launcher's
         # subprocesses will be launched. It is not where the controller
         # and engine will be launched.
         el_class = import_item(config.Global.engine_launcher)
         self.engine_launcher = el_class(
             work_dir=self.cluster_dir, config=config
         )
         cl_class = import_item(config.Global.controller_launcher)
         self.controller_launcher = cl_class(
             work_dir=self.cluster_dir, config=config
         )
 
         # Setup signals
         signal.signal(signal.SIGINT, self.sigint_handler)
 
         # Setup the observing of stopping. If the controller dies, shut
         # everything down as that will be completely fatal for the engines.
         d1 = self.controller_launcher.observe_stop()
         d1.addCallback(self.stop_launchers)
         # But, we don't monitor the stopping of engines. An engine dying
         # is just fine and in principle a user could start a new engine.
         # Also, if we did monitor engine stopping, it is difficult to
         # know what to do when only some engines die. Currently, the
         # observing of engine stopping is inconsistent. Some launchers
         # might trigger on a single engine stopping, other wait until
         # all stop.  TODO: think more about how to handle this.
         
         # Start the controller and engines
         self._stopping = False  # Make sure stop_launchers is not called 2x.
         d = self.start_controller()
         d.addCallback(self.start_engines)
         d.addCallback(self.startup_message)
         # If the controller or engines fail to start, stop everything
         d.addErrback(self.stop_launchers)
         return d
 
     def startup_message(self, r=None):
         log.msg("IPython cluster: started")
         return r
         
     def start_controller(self, r=None):
         # log.msg("In start_controller")
         config = self.master_config
         d = self.controller_launcher.start(
             cluster_dir=config.Global.cluster_dir
         )
         return d
             
     def start_engines(self, r=None):
         # log.msg("In start_engines")
         config = self.master_config
         d = self.engine_launcher.start(
             config.Global.n,
             cluster_dir=config.Global.cluster_dir
         )
         return d
 
     def stop_controller(self, r=None):
         # log.msg("In stop_controller")
         if self.controller_launcher.running:
             d = self.controller_launcher.stop()
             d.addErrback(self.log_err)
             return d
         else:
             return defer.succeed(None)
 
     def stop_engines(self, r=None):
         # log.msg("In stop_engines")
         if self.engine_launcher.running:
             d = self.engine_launcher.stop()
             d.addErrback(self.log_err)
             return d
         else:
             return defer.succeed(None)
 
     def log_err(self, f):
         log.msg(f.getTraceback())
         return None
         
     def stop_launchers(self, r=None):
         if not self._stopping:
             self._stopping = True
             if isinstance(r, failure.Failure):
                 log.msg('Unexpected error in ipcluster:')
                 log.msg(r.getTraceback())
             log.msg("IPython cluster: stopping")
             d= self.stop_engines()
             d2 = self.stop_controller()
             # Wait a few seconds to let things shut down.
             reactor.callLater(3.0, reactor.stop)
 
     def sigint_handler(self, signum, frame):
         self.stop_launchers()
         
     def start_logging(self):
         # Remove old log files of the controller and engine
         if self.master_config.Global.clean_logs:
             log_dir = self.master_config.Global.log_dir
             for f in os.listdir(log_dir):
                 if f.startswith('ipengine' + '-'):
                     if f.endswith('.log') or f.endswith('.out') or f.endswith('.err'):
                         os.remove(os.path.join(log_dir, f))
                 if f.startswith('ipcontroller' + '-'):
                     if f.endswith('.log') or f.endswith('.out') or f.endswith('.err'):
                         os.remove(os.path.join(log_dir, f))
         # This will remote old log files for ipcluster itself
         super(IPClusterApp, self).start_logging()
 
     def start_app(self):
         """Start the application, depending on what subcommand is used."""
         subcmd = self.master_config.Global.subcommand
         if subcmd=='create' or subcmd=='list':
             return
         elif subcmd=='start':
             self.start_app_start()
         elif subcmd=='stop':
             self.start_app_stop()
 
     def start_app_start(self):
         """Start the app for the start subcommand."""
         config = self.master_config
         # First see if the cluster is already running
         try:
             pid = self.get_pid_from_file()
         except PIDFileError:
             pass
         else:
             self.log.critical(
                 'Cluster is already running with [pid=%s]. '
                 'use "ipcluster stop" to stop the cluster.' % pid
             )
             # Here I exit with a unusual exit status that other processes
             # can watch for to learn how I existed.
             self.exit(ALREADY_STARTED)
 
         # Now log and daemonize
         self.log.info(
             'Starting ipcluster with [daemon=%r]' % config.Global.daemonize
         )
         if config.Global.daemonize:
             if os.name=='posix':
                 daemonize()
 
         # Now write the new pid file AFTER our new forked pid is active.
         self.write_pid_file()
         reactor.addSystemEventTrigger('during','shutdown', self.remove_pid_file)
         reactor.run()
 
     def start_app_stop(self):
         """Start the app for the stop subcommand."""
         config = self.master_config
         try:
             pid = self.get_pid_from_file()
         except PIDFileError:
             self.log.critical(
                 'Problem reading pid file, cluster is probably not running.'
             )
             # Here I exit with a unusual exit status that other processes
             # can watch for to learn how I existed.
             self.exit(ALREADY_STOPPED)
         else:
             if os.name=='posix':
                 sig = config.Global.signal
                 self.log.info(
                     "Stopping cluster [pid=%r] with [signal=%r]" % (pid, sig)
                 )
                 os.kill(pid, sig)
             elif os.name=='nt':
                 # As of right now, we don't support daemonize on Windows, so
                 # stop will not do anything. Minimally, it should clean up the
                 # old .pid files.
                 self.remove_pid_file()
 
 def launch_new_instance():
     """Create and run the IPython cluster."""
     app = IPClusterApp()
     app.start()
 
 
 if __name__ == '__main__':
     launch_new_instance()
 

docs/Makefile

@@ -1,91 +1,93 b''
 # Makefile for Sphinx documentation
 #
 
 # You can set these variables from the command line.
 SPHINXOPTS    =
 SPHINXBUILD   = sphinx-build
 PAPER         =
 SRCDIR        = source
 
 # Internal variables.
 PAPEROPT_a4     = -D latex_paper_size=a4
 PAPEROPT_letter = -D latex_paper_size=letter
 ALLSPHINXOPTS   = -d build/doctrees $(PAPEROPT_$(PAPER)) $(SPHINXOPTS) $(SRCDIR)
 
 .PHONY: help clean html web pickle htmlhelp latex changes linkcheck api
 
+default: html
+
 help:
 	@echo "Please use \`make <target>' where <target> is one of"
 	@echo "  html      to make standalone HTML files"
 	@echo "  pickle    to make pickle files (usable by e.g. sphinx-web)"
 	@echo "  htmlhelp  to make HTML files and a HTML help project"
 	@echo "  latex     to make LaTeX files, you can set PAPER=a4 or PAPER=letter"
 	@echo "  changes   to make an overview over all changed/added/deprecated items"
 	@echo "  linkcheck to check all external links for integrity"
 	@echo
 	@echo "Compound utility targets:"
 	@echo "pdf          latex and then runs the PDF generation"
 	@echo "all          html and pdf"
 	@echo "dist         all, and then puts the results in dist/"
 
 clean:
 	-rm -rf build/* dist/* $(SRCDIR)/api/generated
 
 pdf: latex
 	cd build/latex && make all-pdf
 
 all: html pdf
 
 dist: clean all
 	mkdir -p dist
 	ln build/latex/ipython.pdf dist/
 	cp -al build/html dist/
 	@echo "Build finished.  Final docs are in dist/"
 
 html: api
 	mkdir -p build/html build/doctrees
 	$(SPHINXBUILD) -b html $(ALLSPHINXOPTS) build/html
 	@echo
 	@echo "Build finished. The HTML pages are in build/html."
 
 api:
 	python autogen_api.py
 	@echo "Build API docs finished."
 
 pickle:
 	mkdir -p build/pickle build/doctrees
 	$(SPHINXBUILD) -b pickle $(ALLSPHINXOPTS) build/pickle
 	@echo
 	@echo "Build finished; now you can process the pickle files or run"
 	@echo "  sphinx-web build/pickle"
 	@echo "to start the sphinx-web server."
 
 web: pickle
 
 htmlhelp:
 	mkdir -p build/htmlhelp build/doctrees
 	$(SPHINXBUILD) -b htmlhelp $(ALLSPHINXOPTS) build/htmlhelp
 	@echo
 	@echo "Build finished; now you can run HTML Help Workshop with the" \
 	      ".hhp project file in build/htmlhelp."
 
 latex:
 	mkdir -p build/latex build/doctrees
 	$(SPHINXBUILD) -b latex $(ALLSPHINXOPTS) build/latex
 	@echo
 	@echo "Build finished; the LaTeX files are in build/latex."
 	@echo "Run \`make all-pdf' or \`make all-ps' in that directory to" \
 	      "run these through (pdf)latex."
 
 changes:
 	mkdir -p build/changes build/doctrees
 	$(SPHINXBUILD) -b changes $(ALLSPHINXOPTS) build/changes
 	@echo
 	@echo "The overview file is in build/changes."
 
 linkcheck:
 	mkdir -p build/linkcheck build/doctrees
 	$(SPHINXBUILD) -b linkcheck $(ALLSPHINXOPTS) build/linkcheck
 	@echo
 	@echo "Link check complete; look for any errors in the above output " \
 	      "or in build/linkcheck/output.txt."

docs/autogen_api.py

@@ -1,42 +1,43 b''
 #!/usr/bin/env python
 """Script to auto-generate our API docs.
 """
 # stdlib imports
 import os
 import sys
 
 # local imports
 sys.path.append(os.path.abspath('sphinxext'))
 from apigen import ApiDocWriter
 
 #*****************************************************************************
 if __name__ == '__main__':
     pjoin = os.path.join
     package = 'IPython'
     outdir = pjoin('source','api','generated')
     docwriter = ApiDocWriter(package,rst_extension='.txt')
     # You have to escape the . here because . is a special char for regexps.
     # You must do make clean if you change this!
     docwriter.package_skip_patterns += [r'\.fixes$',
                                         r'\.external$',
                                         r'\.extensions',
                                         r'\.kernel\.config',
                                         r'\.attic',
                                         r'\.quarantine',
                                         r'\.deathrow',
                                         r'\.config\.default',
                                         r'\.config\.profile',
                                         r'\.frontend',
                                         r'\.gui'
                                         ]
     docwriter.module_skip_patterns += [ r'\.core\.fakemodule',
                                         r'\.cocoa',
                                         r'\.ipdoctest',
                                         r'\.Gnuplot',
                                         r'\.frontend\.process\.winprocess',
+                                        r'\.Shell',
                                         ]
     docwriter.write_api_docs(outdir)
     docwriter.write_index(outdir, 'gen',
                           relative_to = pjoin('source','api')
                           )
     print '%d files written' % len(docwriter.written_modules)

docs/source/conf.py

@@ -1,192 +1,192 b''
 # -*- coding: utf-8 -*-
 #
 # IPython documentation build configuration file.
 
 # NOTE: This file has been edited manually from the auto-generated one from
 # sphinx.  Do NOT delete and re-generate.  If any changes from sphinx are
 # needed, generate a scratch one and merge by hand any new fields needed.
 
 #
 # This file is execfile()d with the current directory set to its containing dir.
 #
 # The contents of this file are pickled, so don't put values in the namespace
 # that aren't pickleable (module imports are okay, they're removed automatically).
 #
 # All configuration values have a default value; values that are commented out
 # serve to show the default value.
 
 import sys, os
 
 # If your extensions are in another directory, add it here. If the directory
 # is relative to the documentation root, use os.path.abspath to make it
 # absolute, like shown here.
 sys.path.append(os.path.abspath('../sphinxext'))
 
 # Import support for ipython console session syntax highlighting (lives
 # in the sphinxext directory defined above)
 import ipython_console_highlighting
 
 # We load the ipython release info into a dict by explicit execution
 iprelease = {}
 execfile('../../IPython/core/release.py',iprelease)
 
 # General configuration
 # ---------------------
 
 # Add any Sphinx extension module names here, as strings. They can be extensions
 # coming with Sphinx (named 'sphinx.ext.*') or your custom ones.
 extensions = [
     # 'matplotlib.sphinxext.mathmpl',
     'matplotlib.sphinxext.only_directives',
     # 'matplotlib.sphinxext.plot_directive',
     'sphinx.ext.autodoc',
     'sphinx.ext.doctest',
     'inheritance_diagram',
     'ipython_console_highlighting', 
     'numpydoc',  # to preprocess docstrings
 ]
 
 # Add any paths that contain templates here, relative to this directory.
 templates_path = ['_templates']
 
 # The suffix of source filenames.
 source_suffix = '.txt'
 
 # The master toctree document.
 master_doc = 'index'
 
 # General substitutions.
 project = 'IPython'
 copyright = '2008, The IPython Development Team'
 
 # The default replacements for |version| and |release|, also used in various
 # other places throughout the built documents.
 #
 # The full version, including alpha/beta/rc tags.
 release = iprelease['version']
 # The short X.Y version.
 version = '.'.join(release.split('.',2)[:2])
 
 
 # There are two options for replacing |today|: either, you set today to some
 # non-false value, then it is used:
 #today = ''
 # Else, today_fmt is used as the format for a strftime call.
 today_fmt = '%B %d, %Y'
 
 # List of documents that shouldn't be included in the build.
 #unused_docs = []
 
 # List of directories, relative to source directories, that shouldn't be searched
 # for source files.
 exclude_dirs = ['attic']
 
 # If true, '()' will be appended to :func: etc. cross-reference text.
 #add_function_parentheses = True
 
 # If true, the current module name will be prepended to all description
 # unit titles (such as .. function::).
 #add_module_names = True
 
 # If true, sectionauthor and moduleauthor directives will be shown in the
 # output. They are ignored by default.
 #show_authors = False
 
 # The name of the Pygments (syntax highlighting) style to use.
 pygments_style = 'sphinx'
 
 
 # Options for HTML output
 # -----------------------
 
 # The style sheet to use for HTML and HTML Help pages. A file of that name
 # must exist either in Sphinx' static/ path, or in one of the custom paths
 # given in html_static_path.
 html_style = 'default.css'
 
 # The name for this set of Sphinx documents.  If None, it defaults to
 # "<project> v<release> documentation".
 #html_title = None
 
 # The name of an image file (within the static path) to place at the top of
 # the sidebar.
 #html_logo = None
 
 # Add any paths that contain custom static files (such as style sheets) here,
 # relative to this directory. They are copied after the builtin static files,
 # so a file named "default.css" will overwrite the builtin "default.css".
 html_static_path = ['_static']
 
 # If not '', a 'Last updated on:' timestamp is inserted at every page bottom,
 # using the given strftime format.
 html_last_updated_fmt = '%b %d, %Y'
 
 # If true, SmartyPants will be used to convert quotes and dashes to
 # typographically correct entities.
 #html_use_smartypants = True
 
 # Custom sidebar templates, maps document names to template names.
 #html_sidebars = {}
 
 # Additional templates that should be rendered to pages, maps page names to
 # template names.
 #html_additional_pages = {}
 
 # If false, no module index is generated.
 #html_use_modindex = True
 
 # If true, the reST sources are included in the HTML build as _sources/<name>.
 #html_copy_source = True
 
 # If true, an OpenSearch description file will be output, and all pages will
 # contain a <link> tag referring to it.  The value of this option must be the
 # base URL from which the finished HTML is served.
 #html_use_opensearch = ''
 
 # If nonempty, this is the file name suffix for HTML files (e.g. ".xhtml").
 #html_file_suffix = ''
 
 # Output file base name for HTML help builder.
 htmlhelp_basename = 'ipythondoc'
 
 
 # Options for LaTeX output
 # ------------------------
 
 # The paper size ('letter' or 'a4').
 latex_paper_size = 'letter'
 
 # The font size ('10pt', '11pt' or '12pt').
 latex_font_size = '11pt'
 
 # Grouping the document tree into LaTeX files. List of tuples
 # (source start file, target name, title, author, document class [howto/manual]).
 
 latex_documents = [ ('index', 'ipython.tex', 'IPython Documentation',
                      ur"""The IPython Development Team""",
                      'manual', True),
                     ]
 
 # The name of an image file (relative to this directory) to place at the top of
 # the title page.
 #latex_logo = None
 
 # For "manual" documents, if this is true, then toplevel headings are parts,
 # not chapters.
 #latex_use_parts = False
 
 # Additional stuff for the LaTeX preamble.
 #latex_preamble = ''
 
 # Documents to append as an appendix to all manuals.
 #latex_appendices = []
 
 # If false, no module index is generated.
-#latex_use_modindex = True
+latex_use_modindex = True
 
 
 # Cleanup
 # -------
 # delete release info to avoid pickling errors from sphinx
 
 del iprelease