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Adding AzureNotebookManager docs.
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1 1 .. _htmlnotebook:
2 2
3 3 =========================
4 4 An HTML Notebook IPython
5 5 =========================
6 6
7 7 .. seealso::
8 8
9 9 :ref:`Installation requirements <installnotebook>` for the Notebook.
10 10
11 11 The IPython Notebook consists of two related components:
12 12
13 13 * An JSON based Notebook document format for recording and distributing
14 14 Python code and rich text.
15 15 * A web-based user interface for authoring and running notebook documents.
16 16
17 17 The Notebook can be used by starting the Notebook server with the
18 18 command::
19 19
20 20 $ ipython notebook
21 21
22 22 Note that by default, the notebook doesn't load pylab, it's just a normal
23 23 IPython session like any other. If you want pylab support, you must use::
24 24
25 25 $ ipython notebook --pylab
26 26
27 27 which will behave similar to the terminal and Qt console versions, using your
28 28 default matplotlib backend and providing floating interactive plot windows. If
29 29 you want inline figures, you must manually select the ``inline`` backend::
30 30
31 31 $ ipython notebook --pylab inline
32 32
33 33 This server uses the same ZeroMQ-based two process kernel architecture as
34 34 the QT Console as well Tornado for serving HTTP/S requests. Some of the main
35 35 features of the Notebook include:
36 36
37 37 * Display rich data (png/html/latex/svg) in the browser as a result of
38 38 computations.
39 39 * Compose text cells using HTML and Markdown.
40 40 * Import and export notebook documents in range of formats (.ipynb, .py).
41 41 * In browser syntax highlighting, tab completion and autoindentation.
42 42 * Inline matplotlib plots that can be stored in Notebook documents and opened
43 43 later.
44 44
45 45 See :ref:`our installation documentation <install_index>` for directions on
46 46 how to install the notebook and its dependencies.
47 47
48 48 .. note::
49 49
50 50 You can start more than one notebook server at the same time, if you want to
51 51 work on notebooks in different directories. By default the first notebook
52 52 server starts in port 8888, later notebooks search for random ports near
53 53 that one. You can also manually specify the port with the ``--port``
54 54 option.
55 55
56 56
57 57 Basic Usage
58 58 ===========
59 59
60 60 The landing page of the notebook server application, which we call the IPython
61 61 Notebook *dashboard*, shows the notebooks currently available in the directory
62 62 in which the application was started, and allows you to create new notebooks.
63 63
64 64 A notebook is a combination of two things:
65 65
66 66 1. An interactive session connected to an IPython kernel, controlled by a web
67 67 application that can send input to the console and display many types of
68 68 output (text, graphics, mathematics and more). This is the same kernel used
69 69 by the :ref:`Qt console <qtconsole>`, but in this case the web console sends
70 70 input in persistent cells that you can edit in-place instead of the
71 71 vertically scrolling terminal style used by the Qt console.
72 72
73 73 2. A document that can save the inputs and outputs of the session as well as
74 74 additional text that accompanies the code but is not meant for execution.
75 75 In this way, notebook files serve as a complete computational record of a
76 76 session including explanatory text and mathematics, code and resulting
77 77 figures. These documents are internally JSON files and are saved with the
78 78 ``.ipynb`` extension.
79 79
80 80 If you have ever used the Mathematica or Sage notebooks (the latter is also
81 81 web-based__) you should feel right at home. If you have not, you should be
82 82 able to learn how to use it in just a few minutes.
83 83
84 84 .. __: http://sagenb.org
85 85
86 86
87 87 Creating and editing notebooks
88 88 ------------------------------
89 89
90 90 You can create new notebooks from the dashboard with the ``New Notebook``
91 91 button or open existing ones by clicking on their name. Once in a notebook,
92 92 your browser tab will reflect the name of that notebook (prefixed with "IPy:").
93 93 The URL for that notebook is not meant to be human-readable and is *not*
94 94 persistent across invocations of the notebook server.
95 95
96 96 You can also drag and drop into the area listing files any python file: it
97 97 will be imported into a notebook with the same name (but ``.ipynb`` extension)
98 98 located in the directory where the notebook server was started. This notebook
99 99 will consist of a single cell with all the code in the file, which you can
100 100 later manually partition into individual cells for gradual execution, add text
101 101 and graphics, etc.
102 102
103 103
104 104 Workflow and limitations
105 105 ------------------------
106 106
107 107 The normal workflow in a notebook is quite similar to a normal IPython session,
108 108 with the difference that you can edit a cell in-place multiple times until you
109 109 obtain the desired results rather than having to rerun separate scripts with
110 110 the ``%run`` magic (though magics also work in the notebook). Typically
111 111 you'll work on a problem in pieces, organizing related pieces into cells and
112 112 moving forward as previous parts work correctly. This is much more convenient
113 113 for interactive exploration than breaking up a computation into scripts that
114 114 must be executed together, especially if parts of them take a long time to run
115 115 (In the traditional terminal-based IPython, you can use tricks with namespaces
116 116 and ``%run -i`` to achieve this capability, but we think the notebook is a more
117 117 natural solution for that kind of problem).
118 118
119 119 The only significant limitation the notebook currently has, compared to the qt
120 120 console, is that it can not run any code that expects input from the kernel
121 121 (such as scripts that call :func:`raw_input`). Very importantly, this means
122 122 that the ``%debug`` magic does *not* work in the notebook! We intend to
123 123 correct this limitation, but in the meantime, there is a way to debug problems
124 124 in the notebook: you can attach a Qt console to your existing notebook kernel,
125 125 and run ``%debug`` from the Qt console. If your notebook is running on a local
126 126 computer (i.e. if you are accessing it via your localhost address at
127 127 127.0.0.1), you can just type ``%qtconsole`` in the notebook and a Qt console
128 128 will open up connected to that same kernel.
129 129
130 130 In general, the notebook server prints the full details of how to connect to
131 131 each kernel at the terminal, with lines like::
132 132
133 133 [IPKernelApp] To connect another client to this kernel, use:
134 134 [IPKernelApp] --existing kernel-3bb93edd-6b5a-455c-99c8-3b658f45dde5.json
135 135
136 136 This is the name of a JSON file that contains all the port and validation
137 137 information necessary to connect to the kernel. You can manually start a
138 138 qt console with::
139 139
140 140 ipython qtconsole --existing kernel-3bb93edd-6b5a-455c-99c8-3b658f45dde5.json
141 141
142 142 and if you only have a single kernel running, simply typing::
143 143
144 144 ipython qtconsole --existing
145 145
146 146 will automatically find it (it will always find the most recently started
147 147 kernel if there is more than one). You can also request this connection data
148 148 by typing ``%connect_info``; this will print the same file information as well
149 149 as the content of the JSON data structure it contains.
150 150
151 151
152 152 Text input
153 153 ----------
154 154
155 155 In addition to code cells and the output they produce (such as figures), you
156 156 can also type text not meant for execution. To type text, change the type of a
157 157 cell from ``Code`` to ``Markdown`` by using the button or the :kbd:`Ctrl-m m`
158 158 keybinding (see below). You can then type any text in Markdown_ syntax, as
159 159 well as mathematical expressions if you use ``$...$`` for inline math or
160 160 ``$$...$$`` for displayed math.
161 161
162 162
163 163 Exporting a notebook and importing existing scripts
164 164 ---------------------------------------------------
165 165
166 166 If you want to provide others with a static HTML or PDF view of your notebook,
167 167 use the ``Print`` button. This opens a static view of the document, which you
168 168 can print to PDF using your operating system's facilities, or save to a file
169 169 with your web browser's 'Save' option (note that typically, this will create
170 170 both an html file *and* a directory called `notebook_name_files` next to it
171 171 that contains all the necessary style information, so if you intend to share
172 172 this, you must send the directory along with the main html file).
173 173
174 174 The `Download` button lets you save a notebook file to the Download area
175 175 configured by your web browser (particularly useful if you are running the
176 176 notebook server on a remote host and need a file locally). The notebook is
177 177 saved by default with the ``.ipynb`` extension and the files contain JSON data
178 178 that is not meant for human editing or consumption. But you can always export
179 179 the input part of a notebook to a plain python script by choosing Python format
180 180 in the `Download` drop list. This removes all output and saves the text cells
181 181 in comment areas. See ref:`below <notebook_format>` for more details on the
182 182 notebook format.
183 183
184 184 The notebook can also *import* ``.py`` files as notebooks, by dragging and
185 185 dropping the file into the notebook dashboard file list area. By default, the
186 186 entire contents of the file will be loaded into a single code cell. But if
187 187 prior to import, you manually add the ``# <nbformat>2</nbformat>`` marker at
188 188 the start and then add separators for text/code cells, you can get a cleaner
189 189 import with the file broken into individual cells.
190 190
191 191 .. warning::
192 192
193 193 While in simple cases you can roundtrip a notebook to Python, edit the
194 194 python file and import it back without loss of main content, this is in
195 195 general *not guaranteed to work at all*. First, there is extra metadata
196 196 saved in the notebook that may not be saved to the ``.py`` format. And as
197 197 the notebook format evolves in complexity, there will be attributes of the
198 198 notebook that will not survive a roundtrip through the Python form. You
199 199 should think of the Python format as a way to output a script version of a
200 200 notebook and the import capabilities as a way to load existing code to get a
201 201 notebook started. But the Python version is *not* an alternate notebook
202 202 format.
203 203
204 204
205 205 Importing or executing a notebook as a normal Python file
206 206 ---------------------------------------------------------
207 207
208 208 The native format of the notebook, a file with a ``.ipynb`` extension, is a
209 209 JSON container of all the input and output of the notebook, and therefore not
210 210 valid Python by itself. This means that by default, you can not import a
211 211 notebook or execute it as a normal python script. But if you want use
212 212 notebooks as regular Python files, you can start the notebook server with::
213 213
214 214 ipython notebook --script
215 215
216 216 or you can set this option permanently in your configuration file with::
217 217
218 218 c.NotebookManager.save_script=True
219 219
220 220 This will instruct the notebook server to save the ``.py`` export of each
221 221 notebook adjacent to the ``.ipynb`` at every save. These files can be
222 222 ``%run``, imported from regular IPython sessions or other notebooks, or
223 223 executed at the command-line as normal Python files. Since we export the raw
224 224 code you have typed, for these files to be importable from other code you will
225 225 have to avoid using syntax such as ``%magics`` and other IPython-specific
226 226 extensions to the language.
227 227
228 228 In regular practice, the standard way to differentiate importable code from the
229 229 'executable' part of a script is to put at the bottom::
230 230
231 231 if __name__ == '__main__':
232 232 # rest of the code...
233 233
234 234 Since all cells in the notebook are run as top-level code, you'll need to
235 235 similarly protect *all* cells that you do not want executed when other scripts
236 236 try to import your notebook. A convenient shortand for this is to define early
237 237 on::
238 238
239 239 script = __name__ == '__main__'
240 240
241 241 and then on any cell that you need to protect, use::
242 242
243 243 if script:
244 244 # rest of the cell...
245 245
246
247 246 Keyboard use
248 247 ------------
249 248
250 249 All actions in the notebook can be achieved with the mouse, but we have also
251 250 added keyboard shortcuts for the most common ones, so that productive use of
252 251 the notebook can be achieved with minimal mouse intervention. The main
253 252 key bindings you need to remember are:
254 253
255 254 * :kbd:`Shift-Enter`: execute the current cell (similar to the Qt console),
256 255 show output (if any) and jump to the next cell below. If :kbd:`Shift-Enter`
257 256 was invoked on the last input line, a new code cell will also be created. Note
258 257 that in the notebook, simply using :kbd:`Enter` *never* forces execution,
259 258 it simply inserts a new line in the current cell. Therefore, in the notebook
260 259 you must always use :kbd:`Shift-Enter` to get execution (or use the mouse and
261 260 click on the ``Run Selected`` button).
262 261
263 262 * :kbd:`Alt-Enter`: this combination is similar to the previous one, with the
264 263 exception that, if the next cell below is not empty, a new code cell will be
265 264 added to the notebook, even if the cell execution happens not in the last cell.
266 265 In this regard, :kbd:`Alt-Enter`: is simply a shortcut for the :kbd:`Shift-Enter`,
267 266 :kbd:`Ctrl-m a` sequence.
268 267
269 268 * :kbd:`Ctrl-Enter`: execute the current cell in "terminal mode", where any
270 269 output is shown but the cursor stays in the current cell, whose input
271 270 area is flushed empty. This is convenient to do quick in-place experiments
272 271 or query things like filesystem content without creating additional cells you
273 272 may not want saved in your notebook.
274 273
275 274 * :kbd:`Ctrl-m`: this is the prefix for all other keybindings, which consist
276 275 of an additional single letter. Type :kbd:`Ctrl-m h` (that is, the sole
277 276 letter :kbd:`h` after :kbd:`Ctrl-m`) and IPython will show you the remaining
278 277 available keybindings.
279 278
280 279
281 280 .. _notebook_security:
282 281
283 282 Security
284 283 ========
285 284
286 285 You can protect your notebook server with a simple single-password by
287 286 setting the :attr:`NotebookApp.password` configurable. You can prepare a
288 287 hashed password using the function :func:`IPython.lib.security.passwd`:
289 288
290 289 .. sourcecode:: ipython
291 290
292 291 In [1]: from IPython.lib import passwd
293 292 In [2]: passwd()
294 293 Enter password:
295 294 Verify password:
296 295 Out[2]: 'sha1:67c9e60bb8b6:9ffede0825894254b2e042ea597d771089e11aed'
297 296
298 297 .. note::
299 298
300 299 :func:`~IPython.lib.security.passwd` can also take the password as a string
301 300 argument. **Do not** pass it as an argument inside an IPython session, as it
302 301 will be saved in your input history.
303 302
304 303 You can then add this to your :file:`ipython_notebook_config.py`, e.g.::
305 304
306 305 # Password to use for web authentication
307 306 c.NotebookApp.password = u'sha1:67c9e60bb8b6:9ffede0825894254b2e042ea597d771089e11aed'
308 307
309 308 When using a password, it is a good idea to also use SSL, so that your password
310 309 is not sent unencrypted by your browser. You can start the notebook to
311 310 communicate via a secure protocol mode using a self-signed certificate by
312 311 typing::
313 312
314 313 $ ipython notebook --certfile=mycert.pem
315 314
316 315 .. note::
317 316
318 317 A self-signed certificate can be generated with openssl. For example, the
319 318 following command will create a certificate valid for 365 days with both
320 319 the key and certificate data written to the same file::
321 320
322 321 $ openssl req -x509 -nodes -days 365 -newkey rsa:1024 -keyout mycert.pem -out mycert.pem
323 322
324 323 Your browser will warn you of a dangerous certificate because it is
325 324 self-signed. If you want to have a fully compliant certificate that will not
326 325 raise warnings, it is possible (but rather involved) to obtain one for free,
327 326 `as explained in detailed in this tutorial`__.
328 327
329 328 .. __: http://arstechnica.com/security/news/2009/12/how-to-get-set-with-a-secure-sertificate-for-free.ars
330 329
331 330 Keep in mind that when you enable SSL support, you'll need to access the
332 331 notebook server over ``https://``, not over plain ``http://``. The startup
333 332 message from the server prints this, but it's easy to overlook and think the
334 333 server is for some reason non-responsive.
335 334
335 Quick how to's
336 ==============
336 337
337 Quick Howto: running a public notebook server
338 =============================================
338 Running a public notebook server
339 --------------------------------
339 340
340 341 If you want to access your notebook server remotely with just a web browser,
341 342 here is a quick set of instructions. Start by creating a certificate file and
342 343 a hashed password as explained above. Then, create a custom profile for the
343 344 notebook. At the command line, type::
344 345
345 346 ipython profile create nbserver
346 347
347 348 In the profile directory, edit the file ``ipython_notebook_config.py``. By
348 349 default the file has all fields commented, the minimum set you need to
349 350 uncomment and edit is here::
350 351
351 352 c = get_config()
352 353
353 354 # Kernel config
354 355 c.IPKernelApp.pylab = 'inline' # if you want plotting support always
355 356
356 357 # Notebook config
357 358 c.NotebookApp.certfile = u'/absolute/path/to/your/certificate/mycert.pem'
358 359 c.NotebookApp.ip = '*'
359 360 c.NotebookApp.open_browser = False
360 361 c.NotebookApp.password = u'sha1:bcd259ccf...your hashed password here'
361 362 # It's a good idea to put it on a known, fixed port
362 363 c.NotebookApp.port = 9999
363 364
364 365 You can then start the notebook and access it later by pointing your browser to
365 366 ``https://your.host.com:9999`` with ``ipython notebook --profile=nbserver``.
366 367
367 368 Running with a different URL prefix
368 ===================================
369 -----------------------------------
369 370
370 371 The notebook dashboard (i.e. the default landing page with an overview
371 372 of all your notebooks) typically lives at a URL path of
372 373 "http://localhost:8888/". If you want to have it, and the rest of the
373 374 notebook, live under a sub-directory,
374 375 e.g. "http://localhost:8888/ipython/", you can do so with
375 376 configuration options like these (see above for instructions about
376 377 modifying ``ipython_notebook_config.py``)::
377 378
378 379 c.NotebookApp.base_project_url = '/ipython/'
379 380 c.NotebookApp.base_kernel_url = '/ipython/'
380 381 c.NotebookApp.webapp_settings = {'static_url_prefix':'/ipython/static/'}
381 382
383 Using a different notebook store
384 --------------------------------
385
386 By default the notebook server stores notebooks as files in the working
387 directory of the notebook server, also known as the ``notebook_dir``. This
388 logic is implemented in the :class:`FileNotebookManager` class. However, the
389 server can be configured to use a different notebook manager class, which can
390 store the notebooks in a different format. Currently, we ship a
391 :class:`AzureNotebookManager` class that stores notebooks in Azure blob
392 storage. This can be used by adding the following lines to your
393 ``ipython_notebook_config.py`` file::
394
395 c.NotebookApp.notebook_manager_class = 'IPython.frontend.html.notebook.azurenbmanager.AzureNotebookManager'
396 c.AzureNotebookManager.account_name = u'paste_your_account_name_here'
397 c.AzureNotebookManager.account_key = u'paste_your_account_key_here'
398 c.AzureNotebookManager.container = u'notebooks'
399
400 In addition to providing your Azure Blob Storage account name and key, you will
401 have to provide a container name; you can use multiple containers to organize
402 your Notebooks.
403
382 404 .. _notebook_format:
383 405
384 406 The notebook format
385 407 ===================
386 408
387 409 The notebooks themselves are JSON files with an ``ipynb`` extension, formatted
388 410 as legibly as possible with minimal extra indentation and cell content broken
389 411 across lines to make them reasonably friendly to use in version-control
390 412 workflows. You should be very careful if you ever edit manually this JSON
391 413 data, as it is extremely easy to corrupt its internal structure and make the
392 414 file impossible to load. In general, you should consider the notebook as a
393 415 file meant only to be edited by IPython itself, not for hand-editing.
394 416
395 417 .. note::
396 418
397 419 Binary data such as figures are directly saved in the JSON file. This
398 420 provides convenient single-file portability but means the files can be
399 421 large and diffs of binary data aren't very meaningful. Since the binary
400 422 blobs are encoded in a single line they only affect one line of the diff
401 423 output, but they are typically very long lines. You can use the
402 424 'ClearAll' button to remove all output from a notebook prior to
403 425 committing it to version control, if this is a concern.
404 426
405 427 The notebook server can also generate a pure-python version of your notebook,
406 428 by clicking on the 'Download' button and selecting ``py`` as the format. This
407 429 file will contain all the code cells from your notebook verbatim, and all text
408 430 cells prepended with a comment marker. The separation between code and text
409 431 cells is indicated with special comments and there is a header indicating the
410 432 format version. All output is stripped out when exporting to python.
411 433
412 434 Here is an example of a simple notebook with one text cell and one code input
413 435 cell, when exported to python format::
414 436
415 437 # <nbformat>2</nbformat>
416 438
417 439 # <markdowncell>
418 440
419 441 # A text cell
420 442
421 443 # <codecell>
422 444
423 445 print "hello IPython"
424 446
425 447
426 Known Issues
448 Known issues
427 449 ============
428 450
429 451 When behind a proxy, especially if your system or browser is set to autodetect
430 452 the proxy, the html notebook might fail to connect to the server's websockets,
431 453 and present you with a warning at startup. In this case, you need to configure
432 454 your system not to use the proxy for the server's address.
433 455
434 456 In Firefox, for example, go to the Preferences panel, Advanced section,
435 457 Network tab, click 'Settings...', and add the address of the notebook server
436 458 to the 'No proxy for' field.
437 459
438 460
439 461 .. _Markdown: http://daringfireball.net/projects/markdown/basics
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