|
|
.. _parallel_multiengine:
|
|
|
|
|
|
==========================
|
|
|
IPython's Direct interface
|
|
|
==========================
|
|
|
|
|
|
The direct, or multiengine, interface represents one possible way of working with a set of
|
|
|
IPython engines. The basic idea behind the multiengine interface is that the
|
|
|
capabilities of each engine are directly and explicitly exposed to the user.
|
|
|
Thus, in the multiengine interface, each engine is given an id that is used to
|
|
|
identify the engine and give it work to do. This interface is very intuitive
|
|
|
and is designed with interactive usage in mind, and is the best place for
|
|
|
new users of IPython to begin.
|
|
|
|
|
|
Starting the IPython controller and engines
|
|
|
===========================================
|
|
|
|
|
|
To follow along with this tutorial, you will need to start the IPython
|
|
|
controller and four IPython engines. The simplest way of doing this is to use
|
|
|
the :command:`ipcluster` command::
|
|
|
|
|
|
$ ipcluster start --n=4
|
|
|
|
|
|
For more detailed information about starting the controller and engines, see
|
|
|
our :ref:`introduction <parallel_overview>` to using IPython for parallel computing.
|
|
|
|
|
|
Creating a ``Client`` instance
|
|
|
==============================
|
|
|
|
|
|
The first step is to import the IPython :mod:`IPython.parallel`
|
|
|
module and then create a :class:`.Client` instance:
|
|
|
|
|
|
.. sourcecode:: ipython
|
|
|
|
|
|
In [1]: from IPython.parallel import Client
|
|
|
|
|
|
In [2]: rc = Client()
|
|
|
|
|
|
This form assumes that the default connection information (stored in
|
|
|
:file:`ipcontroller-client.json` found in :file:`IPYTHON_DIR/profile_default/security`) is
|
|
|
accurate. If the controller was started on a remote machine, you must copy that connection
|
|
|
file to the client machine, or enter its contents as arguments to the Client constructor:
|
|
|
|
|
|
.. sourcecode:: ipython
|
|
|
|
|
|
# If you have copied the json connector file from the controller:
|
|
|
In [2]: rc = Client('/path/to/ipcontroller-client.json')
|
|
|
# or to connect with a specific profile you have set up:
|
|
|
In [3]: rc = Client(profile='mpi')
|
|
|
|
|
|
|
|
|
To make sure there are engines connected to the controller, users can get a list
|
|
|
of engine ids:
|
|
|
|
|
|
.. sourcecode:: ipython
|
|
|
|
|
|
In [3]: rc.ids
|
|
|
Out[3]: [0, 1, 2, 3]
|
|
|
|
|
|
Here we see that there are four engines ready to do work for us.
|
|
|
|
|
|
For direct execution, we will make use of a :class:`DirectView` object, which can be
|
|
|
constructed via list-access to the client:
|
|
|
|
|
|
.. sourcecode:: ipython
|
|
|
|
|
|
In [4]: dview = rc[:] # use all engines
|
|
|
|
|
|
.. seealso::
|
|
|
|
|
|
For more information, see the in-depth explanation of :ref:`Views <parallel_details>`.
|
|
|
|
|
|
|
|
|
Quick and easy parallelism
|
|
|
==========================
|
|
|
|
|
|
In many cases, you simply want to apply a Python function to a sequence of
|
|
|
objects, but *in parallel*. The client interface provides a simple way
|
|
|
of accomplishing this: using the DirectView's :meth:`~DirectView.map` method.
|
|
|
|
|
|
Parallel map
|
|
|
------------
|
|
|
|
|
|
Python's builtin :func:`map` functions allows a function to be applied to a
|
|
|
sequence element-by-element. This type of code is typically trivial to
|
|
|
parallelize. In fact, since IPython's interface is all about functions anyway,
|
|
|
you can just use the builtin :func:`map` with a :class:`RemoteFunction`, or a
|
|
|
DirectView's :meth:`map` method:
|
|
|
|
|
|
.. sourcecode:: ipython
|
|
|
|
|
|
In [62]: serial_result = map(lambda x:x**10, range(32))
|
|
|
|
|
|
In [63]: parallel_result = dview.map_sync(lambda x: x**10, range(32))
|
|
|
|
|
|
In [67]: serial_result==parallel_result
|
|
|
Out[67]: True
|
|
|
|
|
|
|
|
|
.. note::
|
|
|
|
|
|
The :class:`DirectView`'s version of :meth:`map` does
|
|
|
not do dynamic load balancing. For a load balanced version, use a
|
|
|
:class:`LoadBalancedView`.
|
|
|
|
|
|
.. seealso::
|
|
|
|
|
|
:meth:`map` is implemented via :class:`ParallelFunction`.
|
|
|
|
|
|
Remote function decorators
|
|
|
--------------------------
|
|
|
|
|
|
Remote functions are just like normal functions, but when they are called,
|
|
|
they execute on one or more engines, rather than locally. IPython provides
|
|
|
two decorators:
|
|
|
|
|
|
.. sourcecode:: ipython
|
|
|
|
|
|
In [10]: @dview.remote(block=True)
|
|
|
...: def getpid():
|
|
|
...: import os
|
|
|
...: return os.getpid()
|
|
|
...:
|
|
|
|
|
|
In [11]: getpid()
|
|
|
Out[11]: [12345, 12346, 12347, 12348]
|
|
|
|
|
|
The ``@parallel`` decorator creates parallel functions, that break up an element-wise
|
|
|
operations and distribute them, reconstructing the result.
|
|
|
|
|
|
.. sourcecode:: ipython
|
|
|
|
|
|
In [12]: import numpy as np
|
|
|
|
|
|
In [13]: A = np.random.random((64,48))
|
|
|
|
|
|
In [14]: @dview.parallel(block=True)
|
|
|
...: def pmul(A,B):
|
|
|
...: return A*B
|
|
|
|
|
|
In [15]: C_local = A*A
|
|
|
|
|
|
In [16]: C_remote = pmul(A,A)
|
|
|
|
|
|
In [17]: (C_local == C_remote).all()
|
|
|
Out[17]: True
|
|
|
|
|
|
.. seealso::
|
|
|
|
|
|
See the docstrings for the :func:`parallel` and :func:`remote` decorators for
|
|
|
options.
|
|
|
|
|
|
Calling Python functions
|
|
|
========================
|
|
|
|
|
|
The most basic type of operation that can be performed on the engines is to
|
|
|
execute Python code or call Python functions. Executing Python code can be
|
|
|
done in blocking or non-blocking mode (non-blocking is default) using the
|
|
|
:meth:`.View.execute` method, and calling functions can be done via the
|
|
|
:meth:`.View.apply` method.
|
|
|
|
|
|
apply
|
|
|
-----
|
|
|
|
|
|
The main method for doing remote execution (in fact, all methods that
|
|
|
communicate with the engines are built on top of it), is :meth:`View.apply`.
|
|
|
|
|
|
We strive to provide the cleanest interface we can, so `apply` has the following
|
|
|
signature:
|
|
|
|
|
|
.. sourcecode:: python
|
|
|
|
|
|
view.apply(f, *args, **kwargs)
|
|
|
|
|
|
There are various ways to call functions with IPython, and these flags are set as
|
|
|
attributes of the View. The ``DirectView`` has just two of these flags:
|
|
|
|
|
|
dv.block : bool
|
|
|
whether to wait for the result, or return an :class:`AsyncResult` object
|
|
|
immediately
|
|
|
dv.track : bool
|
|
|
whether to instruct pyzmq to track when
|
|
|
This is primarily useful for non-copying sends of numpy arrays that you plan to
|
|
|
edit in-place. You need to know when it becomes safe to edit the buffer
|
|
|
without corrupting the message.
|
|
|
|
|
|
|
|
|
Creating a view is simple: index-access on a client creates a :class:`.DirectView`.
|
|
|
|
|
|
.. sourcecode:: ipython
|
|
|
|
|
|
In [4]: view = rc[1:3]
|
|
|
Out[4]: <DirectView [1, 2]>
|
|
|
|
|
|
In [5]: view.apply<tab>
|
|
|
view.apply view.apply_async view.apply_sync
|
|
|
|
|
|
For convenience, you can set block temporarily for a single call with the extra sync/async methods.
|
|
|
|
|
|
Blocking execution
|
|
|
------------------
|
|
|
|
|
|
In blocking mode, the :class:`.DirectView` object (called ``dview`` in
|
|
|
these examples) submits the command to the controller, which places the
|
|
|
command in the engines' queues for execution. The :meth:`apply` call then
|
|
|
blocks until the engines are done executing the command:
|
|
|
|
|
|
.. sourcecode:: ipython
|
|
|
|
|
|
In [2]: dview = rc[:] # A DirectView of all engines
|
|
|
In [3]: dview.block=True
|
|
|
In [4]: dview['a'] = 5
|
|
|
|
|
|
In [5]: dview['b'] = 10
|
|
|
|
|
|
In [6]: dview.apply(lambda x: a+b+x, 27)
|
|
|
Out[6]: [42, 42, 42, 42]
|
|
|
|
|
|
You can also select blocking execution on a call-by-call basis with the :meth:`apply_sync`
|
|
|
method:
|
|
|
|
|
|
In [7]: dview.block=False
|
|
|
|
|
|
In [8]: dview.apply_sync(lambda x: a+b+x, 27)
|
|
|
Out[8]: [42, 42, 42, 42]
|
|
|
|
|
|
Python commands can be executed as strings on specific engines by using a View's ``execute``
|
|
|
method:
|
|
|
|
|
|
.. sourcecode:: ipython
|
|
|
|
|
|
In [6]: rc[::2].execute('c=a+b')
|
|
|
|
|
|
In [7]: rc[1::2].execute('c=a-b')
|
|
|
|
|
|
In [8]: dview['c'] # shorthand for dview.pull('c', block=True)
|
|
|
Out[8]: [15, -5, 15, -5]
|
|
|
|
|
|
|
|
|
Non-blocking execution
|
|
|
----------------------
|
|
|
|
|
|
In non-blocking mode, :meth:`apply` submits the command to be executed and
|
|
|
then returns a :class:`AsyncResult` object immediately. The
|
|
|
:class:`AsyncResult` object gives you a way of getting a result at a later
|
|
|
time through its :meth:`get` method.
|
|
|
|
|
|
.. Note::
|
|
|
|
|
|
The :class:`AsyncResult` object provides a superset of the interface in
|
|
|
:py:class:`multiprocessing.pool.AsyncResult`. See the
|
|
|
`official Python documentation <http://docs.python.org/library/multiprocessing#multiprocessing.pool.AsyncResult>`_
|
|
|
for more.
|
|
|
|
|
|
|
|
|
This allows you to quickly submit long running commands without blocking your
|
|
|
local Python/IPython session:
|
|
|
|
|
|
.. sourcecode:: ipython
|
|
|
|
|
|
# define our function
|
|
|
In [6]: def wait(t):
|
|
|
...: import time
|
|
|
...: tic = time.time()
|
|
|
...: time.sleep(t)
|
|
|
...: return time.time()-tic
|
|
|
|
|
|
# In non-blocking mode
|
|
|
In [7]: ar = dview.apply_async(wait, 2)
|
|
|
|
|
|
# Now block for the result
|
|
|
In [8]: ar.get()
|
|
|
Out[8]: [2.0006198883056641, 1.9997570514678955, 1.9996809959411621, 2.0003249645233154]
|
|
|
|
|
|
# Again in non-blocking mode
|
|
|
In [9]: ar = dview.apply_async(wait, 10)
|
|
|
|
|
|
# Poll to see if the result is ready
|
|
|
In [10]: ar.ready()
|
|
|
Out[10]: False
|
|
|
|
|
|
# ask for the result, but wait a maximum of 1 second:
|
|
|
In [45]: ar.get(1)
|
|
|
---------------------------------------------------------------------------
|
|
|
TimeoutError Traceback (most recent call last)
|
|
|
/home/you/<ipython-input-45-7cd858bbb8e0> in <module>()
|
|
|
----> 1 ar.get(1)
|
|
|
|
|
|
/path/to/site-packages/IPython/parallel/asyncresult.pyc in get(self, timeout)
|
|
|
62 raise self._exception
|
|
|
63 else:
|
|
|
---> 64 raise error.TimeoutError("Result not ready.")
|
|
|
65
|
|
|
66 def ready(self):
|
|
|
|
|
|
TimeoutError: Result not ready.
|
|
|
|
|
|
.. Note::
|
|
|
|
|
|
Note the import inside the function. This is a common model, to ensure
|
|
|
that the appropriate modules are imported where the task is run. You can
|
|
|
also manually import modules into the engine(s) namespace(s) via
|
|
|
:meth:`view.execute('import numpy')`.
|
|
|
|
|
|
Often, it is desirable to wait until a set of :class:`AsyncResult` objects
|
|
|
are done. For this, there is a the method :meth:`wait`. This method takes a
|
|
|
tuple of :class:`AsyncResult` objects (or `msg_ids` or indices to the client's History),
|
|
|
and blocks until all of the associated results are ready:
|
|
|
|
|
|
.. sourcecode:: ipython
|
|
|
|
|
|
In [72]: dview.block=False
|
|
|
|
|
|
# A trivial list of AsyncResults objects
|
|
|
In [73]: pr_list = [dview.apply_async(wait, 3) for i in range(10)]
|
|
|
|
|
|
# Wait until all of them are done
|
|
|
In [74]: dview.wait(pr_list)
|
|
|
|
|
|
# Then, their results are ready using get() or the `.r` attribute
|
|
|
In [75]: pr_list[0].get()
|
|
|
Out[75]: [2.9982571601867676, 2.9982588291168213, 2.9987530708312988, 2.9990990161895752]
|
|
|
|
|
|
|
|
|
|
|
|
The ``block`` and ``targets`` keyword arguments and attributes
|
|
|
--------------------------------------------------------------
|
|
|
|
|
|
Most DirectView methods (excluding :meth:`apply` and :meth:`map`) accept ``block`` and
|
|
|
``targets`` as keyword arguments. As we have seen above, these keyword arguments control the
|
|
|
blocking mode and which engines the command is applied to. The :class:`View` class also has
|
|
|
:attr:`block` and :attr:`targets` attributes that control the default behavior when the keyword
|
|
|
arguments are not provided. Thus the following logic is used for :attr:`block` and :attr:`targets`:
|
|
|
|
|
|
* If no keyword argument is provided, the instance attributes are used.
|
|
|
* Keyword argument, if provided override the instance attributes for
|
|
|
the duration of a single call.
|
|
|
|
|
|
The following examples demonstrate how to use the instance attributes:
|
|
|
|
|
|
.. sourcecode:: ipython
|
|
|
|
|
|
In [16]: dview.targets = [0,2]
|
|
|
|
|
|
In [17]: dview.block = False
|
|
|
|
|
|
In [18]: ar = dview.apply(lambda : 10)
|
|
|
|
|
|
In [19]: ar.get()
|
|
|
Out[19]: [10, 10]
|
|
|
|
|
|
In [16]: dview.targets = v.client.ids # all engines (4)
|
|
|
|
|
|
In [21]: dview.block = True
|
|
|
|
|
|
In [22]: dview.apply(lambda : 42)
|
|
|
Out[22]: [42, 42, 42, 42]
|
|
|
|
|
|
The :attr:`block` and :attr:`targets` instance attributes of the
|
|
|
:class:`.DirectView` also determine the behavior of the parallel magic commands.
|
|
|
|
|
|
Parallel magic commands
|
|
|
-----------------------
|
|
|
|
|
|
.. warning::
|
|
|
|
|
|
The magics have not been changed to work with the zeromq system. The
|
|
|
magics do work, but *do not* print stdin/out like they used to in IPython.kernel.
|
|
|
|
|
|
We provide a few IPython magic commands (``%px``, ``%autopx`` and ``%result``)
|
|
|
that make it more pleasant to execute Python commands on the engines
|
|
|
interactively. These are simply shortcuts to :meth:`execute` and
|
|
|
:meth:`get_result` of the :class:`DirectView`. The ``%px`` magic executes a single
|
|
|
Python command on the engines specified by the :attr:`targets` attribute of the
|
|
|
:class:`DirectView` instance:
|
|
|
|
|
|
.. sourcecode:: ipython
|
|
|
|
|
|
# load the parallel magic extension:
|
|
|
In [21]: %load_ext parallelmagic
|
|
|
|
|
|
# Create a DirectView for all targets
|
|
|
In [22]: dv = rc[:]
|
|
|
|
|
|
# Make this DirectView active for parallel magic commands
|
|
|
In [23]: dv.activate()
|
|
|
|
|
|
In [24]: dv.block=True
|
|
|
|
|
|
In [25]: import numpy
|
|
|
|
|
|
In [26]: %px import numpy
|
|
|
Parallel execution on engines: [0, 1, 2, 3]
|
|
|
|
|
|
In [27]: %px a = numpy.random.rand(2,2)
|
|
|
Parallel execution on engines: [0, 1, 2, 3]
|
|
|
|
|
|
In [28]: %px ev = numpy.linalg.eigvals(a)
|
|
|
Parallel execution on engines: [0, 1, 2, 3]
|
|
|
|
|
|
In [28]: dv['ev']
|
|
|
Out[28]: [ array([ 1.09522024, -0.09645227]),
|
|
|
array([ 1.21435496, -0.35546712]),
|
|
|
array([ 0.72180653, 0.07133042]),
|
|
|
array([ 1.46384341e+00, 1.04353244e-04])
|
|
|
]
|
|
|
|
|
|
The ``%result`` magic gets the most recent result, or takes an argument
|
|
|
specifying the index of the result to be requested. It is simply a shortcut to the
|
|
|
:meth:`get_result` method:
|
|
|
|
|
|
.. sourcecode:: ipython
|
|
|
|
|
|
In [29]: dv.apply_async(lambda : ev)
|
|
|
|
|
|
In [30]: %result
|
|
|
Out[30]: [ [ 1.28167017 0.14197338],
|
|
|
[-0.14093616 1.27877273],
|
|
|
[-0.37023573 1.06779409],
|
|
|
[ 0.83664764 -0.25602658] ]
|
|
|
|
|
|
The ``%autopx`` magic switches to a mode where everything you type is executed
|
|
|
on the engines given by the :attr:`targets` attribute:
|
|
|
|
|
|
.. sourcecode:: ipython
|
|
|
|
|
|
In [30]: dv.block=False
|
|
|
|
|
|
In [31]: %autopx
|
|
|
Auto Parallel Enabled
|
|
|
Type %autopx to disable
|
|
|
|
|
|
In [32]: max_evals = []
|
|
|
<IPython.parallel.AsyncResult object at 0x17b8a70>
|
|
|
|
|
|
In [33]: for i in range(100):
|
|
|
....: a = numpy.random.rand(10,10)
|
|
|
....: a = a+a.transpose()
|
|
|
....: evals = numpy.linalg.eigvals(a)
|
|
|
....: max_evals.append(evals[0].real)
|
|
|
....:
|
|
|
....:
|
|
|
<IPython.parallel.AsyncResult object at 0x17af8f0>
|
|
|
|
|
|
In [34]: %autopx
|
|
|
Auto Parallel Disabled
|
|
|
|
|
|
In [35]: dv.block=True
|
|
|
|
|
|
In [36]: px ans= "Average max eigenvalue is: %f"%(sum(max_evals)/len(max_evals))
|
|
|
Parallel execution on engines: [0, 1, 2, 3]
|
|
|
|
|
|
In [37]: dv['ans']
|
|
|
Out[37]: [ 'Average max eigenvalue is: 10.1387247332',
|
|
|
'Average max eigenvalue is: 10.2076902286',
|
|
|
'Average max eigenvalue is: 10.1891484655',
|
|
|
'Average max eigenvalue is: 10.1158837784',]
|
|
|
|
|
|
|
|
|
Moving Python objects around
|
|
|
============================
|
|
|
|
|
|
In addition to calling functions and executing code on engines, you can
|
|
|
transfer Python objects to and from your IPython session and the engines. In
|
|
|
IPython, these operations are called :meth:`push` (sending an object to the
|
|
|
engines) and :meth:`pull` (getting an object from the engines).
|
|
|
|
|
|
Basic push and pull
|
|
|
-------------------
|
|
|
|
|
|
Here are some examples of how you use :meth:`push` and :meth:`pull`:
|
|
|
|
|
|
.. sourcecode:: ipython
|
|
|
|
|
|
In [38]: dview.push(dict(a=1.03234,b=3453))
|
|
|
Out[38]: [None,None,None,None]
|
|
|
|
|
|
In [39]: dview.pull('a')
|
|
|
Out[39]: [ 1.03234, 1.03234, 1.03234, 1.03234]
|
|
|
|
|
|
In [40]: dview.pull('b', targets=0)
|
|
|
Out[40]: 3453
|
|
|
|
|
|
In [41]: dview.pull(('a','b'))
|
|
|
Out[41]: [ [1.03234, 3453], [1.03234, 3453], [1.03234, 3453], [1.03234, 3453] ]
|
|
|
|
|
|
In [43]: dview.push(dict(c='speed'))
|
|
|
Out[43]: [None,None,None,None]
|
|
|
|
|
|
In non-blocking mode :meth:`push` and :meth:`pull` also return
|
|
|
:class:`AsyncResult` objects:
|
|
|
|
|
|
.. sourcecode:: ipython
|
|
|
|
|
|
In [48]: ar = dview.pull('a', block=False)
|
|
|
|
|
|
In [49]: ar.get()
|
|
|
Out[49]: [1.03234, 1.03234, 1.03234, 1.03234]
|
|
|
|
|
|
|
|
|
Dictionary interface
|
|
|
--------------------
|
|
|
|
|
|
Since a Python namespace is just a :class:`dict`, :class:`DirectView` objects provide
|
|
|
dictionary-style access by key and methods such as :meth:`get` and
|
|
|
:meth:`update` for convenience. This make the remote namespaces of the engines
|
|
|
appear as a local dictionary. Underneath, these methods call :meth:`apply`:
|
|
|
|
|
|
.. sourcecode:: ipython
|
|
|
|
|
|
In [51]: dview['a']=['foo','bar']
|
|
|
|
|
|
In [52]: dview['a']
|
|
|
Out[52]: [ ['foo', 'bar'], ['foo', 'bar'], ['foo', 'bar'], ['foo', 'bar'] ]
|
|
|
|
|
|
Scatter and gather
|
|
|
------------------
|
|
|
|
|
|
Sometimes it is useful to partition a sequence and push the partitions to
|
|
|
different engines. In MPI language, this is know as scatter/gather and we
|
|
|
follow that terminology. However, it is important to remember that in
|
|
|
IPython's :class:`Client` class, :meth:`scatter` is from the
|
|
|
interactive IPython session to the engines and :meth:`gather` is from the
|
|
|
engines back to the interactive IPython session. For scatter/gather operations
|
|
|
between engines, MPI should be used:
|
|
|
|
|
|
.. sourcecode:: ipython
|
|
|
|
|
|
In [58]: dview.scatter('a',range(16))
|
|
|
Out[58]: [None,None,None,None]
|
|
|
|
|
|
In [59]: dview['a']
|
|
|
Out[59]: [ [0, 1, 2, 3], [4, 5, 6, 7], [8, 9, 10, 11], [12, 13, 14, 15] ]
|
|
|
|
|
|
In [60]: dview.gather('a')
|
|
|
Out[60]: [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15]
|
|
|
|
|
|
Other things to look at
|
|
|
=======================
|
|
|
|
|
|
How to do parallel list comprehensions
|
|
|
--------------------------------------
|
|
|
|
|
|
In many cases list comprehensions are nicer than using the map function. While
|
|
|
we don't have fully parallel list comprehensions, it is simple to get the
|
|
|
basic effect using :meth:`scatter` and :meth:`gather`:
|
|
|
|
|
|
.. sourcecode:: ipython
|
|
|
|
|
|
In [66]: dview.scatter('x',range(64))
|
|
|
|
|
|
In [67]: %px y = [i**10 for i in x]
|
|
|
Parallel execution on engines: [0, 1, 2, 3]
|
|
|
Out[67]:
|
|
|
|
|
|
In [68]: y = dview.gather('y')
|
|
|
|
|
|
In [69]: print y
|
|
|
[0, 1, 1024, 59049, 1048576, 9765625, 60466176, 282475249, 1073741824,...]
|
|
|
|
|
|
Remote imports
|
|
|
--------------
|
|
|
|
|
|
Sometimes you will want to import packages both in your interactive session
|
|
|
and on your remote engines. This can be done with the :class:`ContextManager`
|
|
|
created by a DirectView's :meth:`sync_imports` method:
|
|
|
|
|
|
.. sourcecode:: ipython
|
|
|
|
|
|
In [69]: with dview.sync_imports():
|
|
|
...: import numpy
|
|
|
importing numpy on engine(s)
|
|
|
|
|
|
Any imports made inside the block will also be performed on the view's engines.
|
|
|
sync_imports also takes a `local` boolean flag that defaults to True, which specifies
|
|
|
whether the local imports should also be performed. However, support for `local=False`
|
|
|
has not been implemented, so only packages that can be imported locally will work
|
|
|
this way.
|
|
|
|
|
|
You can also specify imports via the ``@require`` decorator. This is a decorator
|
|
|
designed for use in Dependencies, but can be used to handle remote imports as well.
|
|
|
Modules or module names passed to ``@require`` will be imported before the decorated
|
|
|
function is called. If they cannot be imported, the decorated function will never
|
|
|
execution, and will fail with an UnmetDependencyError.
|
|
|
|
|
|
.. sourcecode:: ipython
|
|
|
|
|
|
In [69]: from IPython.parallel import require
|
|
|
|
|
|
In [70]: @require('re'):
|
|
|
...: def findall(pat, x):
|
|
|
...: # re is guaranteed to be available
|
|
|
...: return re.findall(pat, x)
|
|
|
|
|
|
# you can also pass modules themselves, that you already have locally:
|
|
|
In [71]: @require(time):
|
|
|
...: def wait(t):
|
|
|
...: time.sleep(t)
|
|
|
...: return t
|
|
|
|
|
|
.. _parallel_exceptions:
|
|
|
|
|
|
Parallel exceptions
|
|
|
-------------------
|
|
|
|
|
|
In the multiengine interface, parallel commands can raise Python exceptions,
|
|
|
just like serial commands. But, it is a little subtle, because a single
|
|
|
parallel command can actually raise multiple exceptions (one for each engine
|
|
|
the command was run on). To express this idea, we have a
|
|
|
:exc:`CompositeError` exception class that will be raised in most cases. The
|
|
|
:exc:`CompositeError` class is a special type of exception that wraps one or
|
|
|
more other types of exceptions. Here is how it works:
|
|
|
|
|
|
.. sourcecode:: ipython
|
|
|
|
|
|
In [76]: dview.block=True
|
|
|
|
|
|
In [77]: dview.execute('1/0')
|
|
|
---------------------------------------------------------------------------
|
|
|
CompositeError Traceback (most recent call last)
|
|
|
/home/user/<ipython-input-10-5d56b303a66c> in <module>()
|
|
|
----> 1 dview.execute('1/0')
|
|
|
|
|
|
/path/to/site-packages/IPython/parallel/client/view.pyc in execute(self, code, targets, block)
|
|
|
591 default: self.block
|
|
|
592 """
|
|
|
--> 593 return self._really_apply(util._execute, args=(code,), block=block, targets=targets)
|
|
|
594
|
|
|
595 def run(self, filename, targets=None, block=None):
|
|
|
|
|
|
/home/user/<string> in _really_apply(self, f, args, kwargs, targets, block, track)
|
|
|
|
|
|
/path/to/site-packages/IPython/parallel/client/view.pyc in sync_results(f, self, *args, **kwargs)
|
|
|
55 def sync_results(f, self, *args, **kwargs):
|
|
|
56 """sync relevant results from self.client to our results attribute."""
|
|
|
---> 57 ret = f(self, *args, **kwargs)
|
|
|
58 delta = self.outstanding.difference(self.client.outstanding)
|
|
|
59 completed = self.outstanding.intersection(delta)
|
|
|
|
|
|
/home/user/<string> in _really_apply(self, f, args, kwargs, targets, block, track)
|
|
|
|
|
|
/path/to/site-packages/IPython/parallel/client/view.pyc in save_ids(f, self, *args, **kwargs)
|
|
|
44 n_previous = len(self.client.history)
|
|
|
45 try:
|
|
|
---> 46 ret = f(self, *args, **kwargs)
|
|
|
47 finally:
|
|
|
48 nmsgs = len(self.client.history) - n_previous
|
|
|
|
|
|
/path/to/site-packages/IPython/parallel/client/view.pyc in _really_apply(self, f, args, kwargs, targets, block, track)
|
|
|
529 if block:
|
|
|
530 try:
|
|
|
--> 531 return ar.get()
|
|
|
532 except KeyboardInterrupt:
|
|
|
533 pass
|
|
|
|
|
|
/path/to/site-packages/IPython/parallel/client/asyncresult.pyc in get(self, timeout)
|
|
|
101 return self._result
|
|
|
102 else:
|
|
|
--> 103 raise self._exception
|
|
|
104 else:
|
|
|
105 raise error.TimeoutError("Result not ready.")
|
|
|
|
|
|
CompositeError: one or more exceptions from call to method: _execute
|
|
|
[0:apply]: ZeroDivisionError: integer division or modulo by zero
|
|
|
[1:apply]: ZeroDivisionError: integer division or modulo by zero
|
|
|
[2:apply]: ZeroDivisionError: integer division or modulo by zero
|
|
|
[3:apply]: ZeroDivisionError: integer division or modulo by zero
|
|
|
|
|
|
Notice how the error message printed when :exc:`CompositeError` is raised has
|
|
|
information about the individual exceptions that were raised on each engine.
|
|
|
If you want, you can even raise one of these original exceptions:
|
|
|
|
|
|
.. sourcecode:: ipython
|
|
|
|
|
|
In [80]: try:
|
|
|
....: dview.execute('1/0')
|
|
|
....: except parallel.error.CompositeError, e:
|
|
|
....: e.raise_exception()
|
|
|
....:
|
|
|
....:
|
|
|
---------------------------------------------------------------------------
|
|
|
RemoteError Traceback (most recent call last)
|
|
|
/home/user/<ipython-input-17-8597e7e39858> in <module>()
|
|
|
2 dview.execute('1/0')
|
|
|
3 except CompositeError as e:
|
|
|
----> 4 e.raise_exception()
|
|
|
|
|
|
/path/to/site-packages/IPython/parallel/error.pyc in raise_exception(self, excid)
|
|
|
266 raise IndexError("an exception with index %i does not exist"%excid)
|
|
|
267 else:
|
|
|
--> 268 raise RemoteError(en, ev, etb, ei)
|
|
|
269
|
|
|
270
|
|
|
|
|
|
RemoteError: ZeroDivisionError(integer division or modulo by zero)
|
|
|
Traceback (most recent call last):
|
|
|
File "/path/to/site-packages/IPython/parallel/engine/streamkernel.py", line 330, in apply_request
|
|
|
exec code in working,working
|
|
|
File "<string>", line 1, in <module>
|
|
|
File "/path/to/site-packages/IPython/parallel/util.py", line 354, in _execute
|
|
|
exec code in globals()
|
|
|
File "<string>", line 1, in <module>
|
|
|
ZeroDivisionError: integer division or modulo by zero
|
|
|
|
|
|
If you are working in IPython, you can simple type ``%debug`` after one of
|
|
|
these :exc:`CompositeError` exceptions is raised, and inspect the exception
|
|
|
instance:
|
|
|
|
|
|
.. sourcecode:: ipython
|
|
|
|
|
|
In [81]: dview.execute('1/0')
|
|
|
---------------------------------------------------------------------------
|
|
|
CompositeError Traceback (most recent call last)
|
|
|
/home/user/<ipython-input-10-5d56b303a66c> in <module>()
|
|
|
----> 1 dview.execute('1/0')
|
|
|
|
|
|
/path/to/site-packages/IPython/parallel/client/view.pyc in execute(self, code, targets, block)
|
|
|
591 default: self.block
|
|
|
592 """
|
|
|
--> 593 return self._really_apply(util._execute, args=(code,), block=block, targets=targets)
|
|
|
594
|
|
|
595 def run(self, filename, targets=None, block=None):
|
|
|
|
|
|
/home/user/<string> in _really_apply(self, f, args, kwargs, targets, block, track)
|
|
|
|
|
|
/path/to/site-packages/IPython/parallel/client/view.pyc in sync_results(f, self, *args, **kwargs)
|
|
|
55 def sync_results(f, self, *args, **kwargs):
|
|
|
56 """sync relevant results from self.client to our results attribute."""
|
|
|
---> 57 ret = f(self, *args, **kwargs)
|
|
|
58 delta = self.outstanding.difference(self.client.outstanding)
|
|
|
59 completed = self.outstanding.intersection(delta)
|
|
|
|
|
|
/home/user/<string> in _really_apply(self, f, args, kwargs, targets, block, track)
|
|
|
|
|
|
/path/to/site-packages/IPython/parallel/client/view.pyc in save_ids(f, self, *args, **kwargs)
|
|
|
44 n_previous = len(self.client.history)
|
|
|
45 try:
|
|
|
---> 46 ret = f(self, *args, **kwargs)
|
|
|
47 finally:
|
|
|
48 nmsgs = len(self.client.history) - n_previous
|
|
|
|
|
|
/path/to/site-packages/IPython/parallel/client/view.pyc in _really_apply(self, f, args, kwargs, targets, block, track)
|
|
|
529 if block:
|
|
|
530 try:
|
|
|
--> 531 return ar.get()
|
|
|
532 except KeyboardInterrupt:
|
|
|
533 pass
|
|
|
|
|
|
/path/to/site-packages/IPython/parallel/client/asyncresult.pyc in get(self, timeout)
|
|
|
101 return self._result
|
|
|
102 else:
|
|
|
--> 103 raise self._exception
|
|
|
104 else:
|
|
|
105 raise error.TimeoutError("Result not ready.")
|
|
|
|
|
|
CompositeError: one or more exceptions from call to method: _execute
|
|
|
[0:apply]: ZeroDivisionError: integer division or modulo by zero
|
|
|
[1:apply]: ZeroDivisionError: integer division or modulo by zero
|
|
|
[2:apply]: ZeroDivisionError: integer division or modulo by zero
|
|
|
[3:apply]: ZeroDivisionError: integer division or modulo by zero
|
|
|
|
|
|
In [82]: %debug
|
|
|
> /path/to/site-packages/IPython/parallel/client/asyncresult.py(103)get()
|
|
|
102 else:
|
|
|
--> 103 raise self._exception
|
|
|
104 else:
|
|
|
|
|
|
# With the debugger running, self._exception is the exceptions instance. We can tab complete
|
|
|
# on it and see the extra methods that are available.
|
|
|
ipdb> self._exception.<tab>
|
|
|
e.__class__ e.__getitem__ e.__new__ e.__setstate__ e.args
|
|
|
e.__delattr__ e.__getslice__ e.__reduce__ e.__str__ e.elist
|
|
|
e.__dict__ e.__hash__ e.__reduce_ex__ e.__weakref__ e.message
|
|
|
e.__doc__ e.__init__ e.__repr__ e._get_engine_str e.print_tracebacks
|
|
|
e.__getattribute__ e.__module__ e.__setattr__ e._get_traceback e.raise_exception
|
|
|
ipdb> self._exception.print_tracebacks()
|
|
|
[0:apply]:
|
|
|
Traceback (most recent call last):
|
|
|
File "/path/to/site-packages/IPython/parallel/engine/streamkernel.py", line 330, in apply_request
|
|
|
exec code in working,working
|
|
|
File "<string>", line 1, in <module>
|
|
|
File "/path/to/site-packages/IPython/parallel/util.py", line 354, in _execute
|
|
|
exec code in globals()
|
|
|
File "<string>", line 1, in <module>
|
|
|
ZeroDivisionError: integer division or modulo by zero
|
|
|
|
|
|
|
|
|
[1:apply]:
|
|
|
Traceback (most recent call last):
|
|
|
File "/path/to/site-packages/IPython/parallel/engine/streamkernel.py", line 330, in apply_request
|
|
|
exec code in working,working
|
|
|
File "<string>", line 1, in <module>
|
|
|
File "/path/to/site-packages/IPython/parallel/util.py", line 354, in _execute
|
|
|
exec code in globals()
|
|
|
File "<string>", line 1, in <module>
|
|
|
ZeroDivisionError: integer division or modulo by zero
|
|
|
|
|
|
|
|
|
[2:apply]:
|
|
|
Traceback (most recent call last):
|
|
|
File "/path/to/site-packages/IPython/parallel/engine/streamkernel.py", line 330, in apply_request
|
|
|
exec code in working,working
|
|
|
File "<string>", line 1, in <module>
|
|
|
File "/path/to/site-packages/IPython/parallel/util.py", line 354, in _execute
|
|
|
exec code in globals()
|
|
|
File "<string>", line 1, in <module>
|
|
|
ZeroDivisionError: integer division or modulo by zero
|
|
|
|
|
|
|
|
|
[3:apply]:
|
|
|
Traceback (most recent call last):
|
|
|
File "/path/to/site-packages/IPython/parallel/engine/streamkernel.py", line 330, in apply_request
|
|
|
exec code in working,working
|
|
|
File "<string>", line 1, in <module>
|
|
|
File "/path/to/site-packages/IPython/parallel/util.py", line 354, in _execute
|
|
|
exec code in globals()
|
|
|
File "<string>", line 1, in <module>
|
|
|
ZeroDivisionError: integer division or modulo by zero
|
|
|
|
|
|
|
|
|
All of this same error handling magic even works in non-blocking mode:
|
|
|
|
|
|
.. sourcecode:: ipython
|
|
|
|
|
|
In [83]: dview.block=False
|
|
|
|
|
|
In [84]: ar = dview.execute('1/0')
|
|
|
|
|
|
In [85]: ar.get()
|
|
|
---------------------------------------------------------------------------
|
|
|
CompositeError Traceback (most recent call last)
|
|
|
/home/user/<ipython-input-21-8531eb3d26fb> in <module>()
|
|
|
----> 1 ar.get()
|
|
|
|
|
|
/path/to/site-packages/IPython/parallel/client/asyncresult.pyc in get(self, timeout)
|
|
|
101 return self._result
|
|
|
102 else:
|
|
|
--> 103 raise self._exception
|
|
|
104 else:
|
|
|
105 raise error.TimeoutError("Result not ready.")
|
|
|
|
|
|
CompositeError: one or more exceptions from call to method: _execute
|
|
|
[0:apply]: ZeroDivisionError: integer division or modulo by zero
|
|
|
[1:apply]: ZeroDivisionError: integer division or modulo by zero
|
|
|
[2:apply]: ZeroDivisionError: integer division or modulo by zero
|
|
|
[3:apply]: ZeroDivisionError: integer division or modulo by zero
|
|
|
|
|
|
|