|
|
.. _faq:
|
|
|
|
|
|
========================================
|
|
|
Frequently asked questions
|
|
|
========================================
|
|
|
|
|
|
General questions
|
|
|
=================
|
|
|
|
|
|
Questions about parallel computing with IPython
|
|
|
================================================
|
|
|
|
|
|
Will IPython speed my Python code up?
|
|
|
--------------------------------------
|
|
|
|
|
|
Yes and no. When converting a serial code to run in parallel, there often many
|
|
|
difficulty questions that need to be answered, such as:
|
|
|
|
|
|
* How should data be decomposed onto the set of processors?
|
|
|
* What are the data movement patterns?
|
|
|
* Can the algorithm be structured to minimize data movement?
|
|
|
* Is dynamic load balancing important?
|
|
|
|
|
|
We can't answer such questions for you. This is the hard (but fun) work of parallel
|
|
|
computing. But, once you understand these things IPython will make it easier for you to
|
|
|
implement a good solution quickly. Most importantly, you will be able to use the
|
|
|
resulting parallel code interactively.
|
|
|
|
|
|
With that said, if your problem is trivial to parallelize, IPython has a number of
|
|
|
different interfaces that will enable you to parallelize things is almost no time at
|
|
|
all. A good place to start is the ``map`` method of our `multiengine interface`_.
|
|
|
|
|
|
.. _multiengine interface: ./parallel_multiengine
|
|
|
|
|
|
What is the best way to use MPI from Python?
|
|
|
--------------------------------------------
|
|
|
|
|
|
What about all the other parallel computing packages in Python?
|
|
|
---------------------------------------------------------------
|
|
|
|
|
|
Some of the unique characteristic of IPython are:
|
|
|
|
|
|
* IPython is the only architecture that abstracts out the notion of a
|
|
|
parallel computation in such a way that new models of parallel computing
|
|
|
can be explored quickly and easily. If you don't like the models we
|
|
|
provide, you can simply create your own using the capabilities we provide.
|
|
|
* IPython is asynchronous from the ground up (we use `Twisted`_).
|
|
|
* IPython's architecture is designed to avoid subtle problems
|
|
|
that emerge because of Python's global interpreter lock (GIL).
|
|
|
* While IPython'1 architecture is designed to support a wide range
|
|
|
of novel parallel computing models, it is fully interoperable with
|
|
|
traditional MPI applications.
|
|
|
* IPython has been used and tested extensively on modern supercomputers.
|
|
|
* IPython's networking layers are completely modular. Thus, is
|
|
|
straightforward to replace our existing network protocols with
|
|
|
high performance alternatives (ones based upon Myranet/Infiniband).
|
|
|
* IPython is designed from the ground up to support collaborative
|
|
|
parallel computing. This enables multiple users to actively develop
|
|
|
and run the *same* parallel computation.
|
|
|
* Interactivity is a central goal for us. While IPython does not have
|
|
|
to be used interactivly, is can be.
|
|
|
|
|
|
.. _Twisted: http://www.twistedmatrix.com
|
|
|
|
|
|
Why The IPython controller a bottleneck in my parallel calculation?
|
|
|
-------------------------------------------------------------------
|
|
|
|
|
|
A golden rule in parallel computing is that you should only move data around if you
|
|
|
absolutely need to. The main reason that the controller becomes a bottleneck is that
|
|
|
too much data is being pushed and pulled to and from the engines. If your algorithm
|
|
|
is structured in this way, you really should think about alternative ways of
|
|
|
handling the data movement. Here are some ideas:
|
|
|
|
|
|
1. Have the engines write data to files on the locals disks of the engines.
|
|
|
2. Have the engines write data to files on a file system that is shared by
|
|
|
the engines.
|
|
|
3. Have the engines write data to a database that is shared by the engines.
|
|
|
4. Simply keep data in the persistent memory of the engines and move the
|
|
|
computation to the data (rather than the data to the computation).
|
|
|
5. See if you can pass data directly between engines using MPI.
|
|
|
|
|
|
Isn't Python slow to be used for high-performance parallel computing?
|
|
|
---------------------------------------------------------------------
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|