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Do not create checkpoint_dir relative to current dir...
Do not create checkpoint_dir relative to current dir FileNotebookManager.create_checkpoint attempted to create checkpoint_dir relative to the current working directory, not the notebooks directory set in NotebookManager.notebook_dir. FileNotebookManager.get_checkpoint_path already creates checkpoint_dir. Fixed already in 19651d2, but this can be used as a small bugfix for 2.x, in case that is not being backported.

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README_STARTUP
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This is the IPython startup directory
.py and .ipy files in this directory will be run *prior* to any code or files specified
via the exec_lines or exec_files configurables whenever you load this profile.
Files will be run in lexicographical order, so you can control the execution order of files
with a prefix, e.g.::
00-first.py
50-middle.py
99-last.ipy