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"""A TaskRecord backend using sqlite3"""
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#-----------------------------------------------------------------------------
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# Copyright (C) 2011 The IPython Development Team
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#
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# Distributed under the terms of the BSD License. The full license is in
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# the file COPYING, distributed as part of this software.
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#-----------------------------------------------------------------------------
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import json
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import os
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import cPickle as pickle
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from datetime import datetime
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import sqlite3
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from zmq.eventloop import ioloop
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from IPython.utils.traitlets import Unicode, Instance, List, Dict
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from .dictdb import BaseDB
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from IPython.utils.jsonutil import date_default, extract_dates, squash_dates
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#-----------------------------------------------------------------------------
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# SQLite operators, adapters, and converters
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#-----------------------------------------------------------------------------
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operators = {
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'$lt' : "<",
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'$gt' : ">",
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# null is handled weird with ==,!=
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'$eq' : "=",
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'$ne' : "!=",
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'$lte': "<=",
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'$gte': ">=",
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'$in' : ('=', ' OR '),
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'$nin': ('!=', ' AND '),
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# '$all': None,
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# '$mod': None,
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# '$exists' : None
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}
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null_operators = {
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'=' : "IS NULL",
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'!=' : "IS NOT NULL",
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}
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def _adapt_dict(d):
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return json.dumps(d, default=date_default)
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def _convert_dict(ds):
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if ds is None:
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return ds
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else:
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return extract_dates(json.loads(ds))
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def _adapt_bufs(bufs):
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# this is *horrible*
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# copy buffers into single list and pickle it:
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if bufs and isinstance(bufs[0], (bytes, buffer)):
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return sqlite3.Binary(pickle.dumps(map(bytes, bufs),-1))
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elif bufs:
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return bufs
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else:
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return None
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def _convert_bufs(bs):
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if bs is None:
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return []
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else:
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return pickle.loads(bytes(bs))
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#-----------------------------------------------------------------------------
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# SQLiteDB class
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#-----------------------------------------------------------------------------
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class SQLiteDB(BaseDB):
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"""SQLite3 TaskRecord backend."""
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filename = Unicode('tasks.db', config=True,
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help="""The filename of the sqlite task database. [default: 'tasks.db']""")
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location = Unicode('', config=True,
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help="""The directory containing the sqlite task database. The default
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is to use the cluster_dir location.""")
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table = Unicode("", config=True,
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help="""The SQLite Table to use for storing tasks for this session. If unspecified,
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a new table will be created with the Hub's IDENT. Specifying the table will result
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in tasks from previous sessions being available via Clients' db_query and
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get_result methods.""")
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_db = Instance('sqlite3.Connection')
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# the ordered list of column names
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_keys = List(['msg_id' ,
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'header' ,
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'content',
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'buffers',
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'submitted',
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'client_uuid' ,
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'engine_uuid' ,
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'started',
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'completed',
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'resubmitted',
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'result_header' ,
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'result_content' ,
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'result_buffers' ,
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'queue' ,
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'pyin' ,
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'pyout',
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'pyerr',
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'stdout',
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'stderr',
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])
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# sqlite datatypes for checking that db is current format
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_types = Dict({'msg_id' : 'text' ,
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'header' : 'dict text',
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'content' : 'dict text',
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'buffers' : 'bufs blob',
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'submitted' : 'timestamp',
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'client_uuid' : 'text',
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'engine_uuid' : 'text',
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'started' : 'timestamp',
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'completed' : 'timestamp',
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'resubmitted' : 'timestamp',
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'result_header' : 'dict text',
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'result_content' : 'dict text',
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'result_buffers' : 'bufs blob',
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'queue' : 'text',
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'pyin' : 'text',
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'pyout' : 'text',
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'pyerr' : 'text',
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'stdout' : 'text',
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'stderr' : 'text',
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})
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def __init__(self, **kwargs):
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super(SQLiteDB, self).__init__(**kwargs)
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if not self.table:
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# use session, and prefix _, since starting with # is illegal
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self.table = '_'+self.session.replace('-','_')
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if not self.location:
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# get current profile
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from IPython.core.newapplication import BaseIPythonApplication
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if BaseIPythonApplication.initialized():
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app = BaseIPythonApplication.instance()
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if app.profile_dir is not None:
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self.location = app.profile_dir.location
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else:
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self.location = u'.'
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else:
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self.location = u'.'
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self._init_db()
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# register db commit as 2s periodic callback
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# to prevent clogging pipes
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# assumes we are being run in a zmq ioloop app
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loop = ioloop.IOLoop.instance()
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pc = ioloop.PeriodicCallback(self._db.commit, 2000, loop)
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pc.start()
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def _defaults(self, keys=None):
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"""create an empty record"""
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d = {}
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keys = self._keys if keys is None else keys
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for key in keys:
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d[key] = None
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return d
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def _check_table(self):
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"""Ensure that an incorrect table doesn't exist
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If a bad (old) table does exist, return False
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"""
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cursor = self._db.execute("PRAGMA table_info(%s)"%self.table)
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lines = cursor.fetchall()
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if not lines:
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# table does not exist
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return True
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types = {}
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keys = []
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for line in lines:
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keys.append(line[1])
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types[line[1]] = line[2]
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if self._keys != keys:
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# key mismatch
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self.log.warn('keys mismatch')
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return False
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for key in self._keys:
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if types[key] != self._types[key]:
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self.log.warn(
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'type mismatch: %s: %s != %s'%(key,types[key],self._types[key])
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)
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return False
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return True
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def _init_db(self):
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"""Connect to the database and get new session number."""
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# register adapters
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sqlite3.register_adapter(dict, _adapt_dict)
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sqlite3.register_converter('dict', _convert_dict)
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sqlite3.register_adapter(list, _adapt_bufs)
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sqlite3.register_converter('bufs', _convert_bufs)
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# connect to the db
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dbfile = os.path.join(self.location, self.filename)
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self._db = sqlite3.connect(dbfile, detect_types=sqlite3.PARSE_DECLTYPES,
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# isolation_level = None)#,
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cached_statements=64)
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# print dir(self._db)
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first_table = self.table
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i=0
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while not self._check_table():
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i+=1
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self.table = first_table+'_%i'%i
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self.log.warn(
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"Table %s exists and doesn't match db format, trying %s"%
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(first_table,self.table)
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)
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self._db.execute("""CREATE TABLE IF NOT EXISTS %s
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(msg_id text PRIMARY KEY,
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header dict text,
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content dict text,
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buffers bufs blob,
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submitted timestamp,
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client_uuid text,
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engine_uuid text,
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started timestamp,
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completed timestamp,
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resubmitted timestamp,
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result_header dict text,
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result_content dict text,
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result_buffers bufs blob,
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queue text,
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pyin text,
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pyout text,
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pyerr text,
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stdout text,
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stderr text)
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"""%self.table)
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self._db.commit()
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def _dict_to_list(self, d):
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"""turn a mongodb-style record dict into a list."""
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return [ d[key] for key in self._keys ]
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def _list_to_dict(self, line, keys=None):
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"""Inverse of dict_to_list"""
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keys = self._keys if keys is None else keys
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d = self._defaults(keys)
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for key,value in zip(keys, line):
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d[key] = value
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return d
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def _render_expression(self, check):
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"""Turn a mongodb-style search dict into an SQL query."""
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expressions = []
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args = []
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skeys = set(check.keys())
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skeys.difference_update(set(self._keys))
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skeys.difference_update(set(['buffers', 'result_buffers']))
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if skeys:
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raise KeyError("Illegal testing key(s): %s"%skeys)
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for name,sub_check in check.iteritems():
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if isinstance(sub_check, dict):
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for test,value in sub_check.iteritems():
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try:
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op = operators[test]
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except KeyError:
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raise KeyError("Unsupported operator: %r"%test)
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if isinstance(op, tuple):
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op, join = op
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if value is None and op in null_operators:
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expr = "%s %s"%null_operators[op]
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else:
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expr = "%s %s ?"%(name, op)
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if isinstance(value, (tuple,list)):
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if op in null_operators and any([v is None for v in value]):
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# equality tests don't work with NULL
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raise ValueError("Cannot use %r test with NULL values on SQLite backend"%test)
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expr = '( %s )'%( join.join([expr]*len(value)) )
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args.extend(value)
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else:
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args.append(value)
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expressions.append(expr)
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else:
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# it's an equality check
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if sub_check is None:
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expressions.append("%s IS NULL")
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else:
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expressions.append("%s = ?"%name)
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args.append(sub_check)
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expr = " AND ".join(expressions)
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return expr, args
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def add_record(self, msg_id, rec):
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"""Add a new Task Record, by msg_id."""
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d = self._defaults()
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d.update(rec)
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d['msg_id'] = msg_id
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line = self._dict_to_list(d)
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tups = '(%s)'%(','.join(['?']*len(line)))
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self._db.execute("INSERT INTO %s VALUES %s"%(self.table, tups), line)
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# self._db.commit()
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def get_record(self, msg_id):
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"""Get a specific Task Record, by msg_id."""
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cursor = self._db.execute("""SELECT * FROM %s WHERE msg_id==?"""%self.table, (msg_id,))
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line = cursor.fetchone()
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if line is None:
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raise KeyError("No such msg: %r"%msg_id)
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return self._list_to_dict(line)
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def update_record(self, msg_id, rec):
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"""Update the data in an existing record."""
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query = "UPDATE %s SET "%self.table
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sets = []
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keys = sorted(rec.keys())
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values = []
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for key in keys:
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sets.append('%s = ?'%key)
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values.append(rec[key])
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query += ', '.join(sets)
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query += ' WHERE msg_id == ?'
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values.append(msg_id)
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self._db.execute(query, values)
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# self._db.commit()
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def drop_record(self, msg_id):
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"""Remove a record from the DB."""
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self._db.execute("""DELETE FROM %s WHERE msg_id==?"""%self.table, (msg_id,))
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# self._db.commit()
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def drop_matching_records(self, check):
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"""Remove a record from the DB."""
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expr,args = self._render_expression(check)
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query = "DELETE FROM %s WHERE %s"%(self.table, expr)
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self._db.execute(query,args)
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# self._db.commit()
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def find_records(self, check, keys=None):
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"""Find records matching a query dict, optionally extracting subset of keys.
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Returns list of matching records.
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Parameters
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----------
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check: dict
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mongodb-style query argument
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keys: list of strs [optional]
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if specified, the subset of keys to extract. msg_id will *always* be
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included.
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"""
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if keys:
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bad_keys = [ key for key in keys if key not in self._keys ]
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if bad_keys:
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raise KeyError("Bad record key(s): %s"%bad_keys)
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if keys:
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# ensure msg_id is present and first:
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if 'msg_id' in keys:
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keys.remove('msg_id')
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keys.insert(0, 'msg_id')
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req = ', '.join(keys)
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else:
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req = '*'
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expr,args = self._render_expression(check)
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query = """SELECT %s FROM %s WHERE %s"""%(req, self.table, expr)
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cursor = self._db.execute(query, args)
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matches = cursor.fetchall()
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records = []
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for line in matches:
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rec = self._list_to_dict(line, keys)
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records.append(rec)
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return records
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def get_history(self):
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"""get all msg_ids, ordered by time submitted."""
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query = """SELECT msg_id FROM %s ORDER by submitted ASC"""%self.table
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cursor = self._db.execute(query)
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# will be a list of length 1 tuples
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return [ tup[0] for tup in cursor.fetchall()]
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__all__ = ['SQLiteDB']
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