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Merge pull request #3802 from ivanov/doc-to-rst...
Merge pull request #3802 from ivanov/doc-to-rst This renames our documentation files to .rst so that it renders nicely on GitHub The docs build just fine with these changes, it'd be good to get this in before any more changes are made to the docs

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links.txt
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.. This (-*- rst -*-) format file contains commonly used link targets
and name substitutions. It may be included in many files,
therefore it should only contain link targets and name
substitutions. Try grepping for "^\.\. _" to find plausible
candidates for this list.
NOTE: this file must have an extension *opposite* to that of the main reST
files in the manuals, so that we can include it with ".. include::"
directives, but without triggering warnings from Sphinx for not being listed
in any toctree. Since IPython uses .txt for the main files, this wone will
use .rst.
NOTE: reST targets are
__not_case_sensitive__, so only one target definition is needed for
ipython, IPython, etc.
NOTE: Some of these were taken from the nipy links compendium.
.. Main IPython links
.. _ipython: http://ipython.org
.. _`ipython manual`: http://ipython.org/documentation.html
.. _ipython_github: http://github.com/ipython/ipython/
.. _ipython_github_repo: http://github.com/ipython/ipython/
.. _ipython_downloads: http://ipython.org/download.html
.. _ipython_pypi: http://pypi.python.org/pypi/ipython
.. _ZeroMQ: http://zeromq.org
.. Documentation tools and related links
.. _graphviz: http://www.graphviz.org
.. _Sphinx: http://sphinx.pocoo.org
.. _`Sphinx reST`: http://sphinx.pocoo.org/rest.html
.. _sampledoc: http://matplotlib.sourceforge.net/sampledoc
.. _reST: http://docutils.sourceforge.net/rst.html
.. _docutils: http://docutils.sourceforge.net
.. _lyx: http://www.lyx.org
.. _pep8: http://www.python.org/dev/peps/pep-0008
.. _numpy_coding_guide: https://github.com/numpy/numpy/blob/master/doc/HOWTO_DOCUMENT.rst.txt
.. Licenses
.. _GPL: http://www.gnu.org/licenses/gpl.html
.. _BSD: http://www.opensource.org/licenses/bsd-license.php
.. _LGPL: http://www.gnu.org/copyleft/lesser.html
.. Other python projects
.. _numpy: http://numpy.scipy.org
.. _scipy: http://www.scipy.org
.. _scipy_conference: http://conference.scipy.org
.. _matplotlib: http://matplotlib.sourceforge.net
.. _pythonxy: http://www.pythonxy.com
.. _ETS: http://code.enthought.com/projects/tool-suite.php
.. _EPD: http://www.enthought.com/products/epd.php
.. _python: http://www.python.org
.. _mayavi: http://code.enthought.com/projects/mayavi
.. _sympy: http://code.google.com/p/sympy
.. _sage: http://sagemath.org
.. _pydy: http://code.google.com/p/pydy
.. _vpython: http://vpython.org
.. _cython: http://cython.org
.. _software carpentry: http://software-carpentry.org
.. Not so python scientific computing tools
.. _matlab: http://www.mathworks.com
.. _VTK: http://vtk.org
.. Other organizations
.. _enthought: http://www.enthought.com
.. _kitware: http://www.kitware.com
.. _netlib: http://netlib.org
.. Other tools and projects
.. _indefero: http://www.indefero.net
.. _git: http://git-scm.com
.. _github: http://github.com
.. _MarkDown: http://daringfireball.net/projects/markdown/