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Small doc updates, near final release.
Small doc updates, near final release.

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git_links.txt
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.. This (-*- rst -*-) format file contains commonly used link targets
and name substitutions. It may be included in many files,
therefore it should only contain link targets and name
substitutions. Try grepping for "^\.\. _" to find plausible
candidates for this list.
.. NOTE: reST targets are
__not_case_sensitive__, so only one target definition is needed for
nipy, NIPY, Nipy, etc...
.. PROJECTNAME placeholders
.. _PROJECTNAME: http://neuroimaging.scipy.org
.. _`PROJECTNAME github`: http://github.com/nipy
.. _`PROJECTNAME mailing list`: http://projects.scipy.org/mailman/listinfo/nipy-devel
.. nipy
.. _nipy: http://nipy.org/nipy
.. _`nipy github`: http://github.com/nipy/nipy
.. _`nipy mailing list`: http://mail.scipy.org/mailman/listinfo/nipy-devel
.. ipython
.. _ipython: http://ipython.org
.. _`ipython github`: http://github.com/ipython/ipython
.. _`ipython mailing list`: http://mail.scipy.org/mailman/listinfo/IPython-dev
.. nipy
.. _dipy: http://nipy.org/dipy
.. _`dipy github`: http://github.com/Garyfallidis/dipy
.. _`dipy mailing list`: http://mail.scipy.org/mailman/listinfo/nipy-devel
.. git stuff
.. _git: http://git-scm.com/
.. _github: http://github.com
.. _github help: http://help.github.com
.. _msysgit: http://code.google.com/p/msysgit/downloads/list
.. _git-osx-installer: http://code.google.com/p/git-osx-installer/downloads/list
.. _subversion: http://subversion.tigris.org/
.. _git cheat sheet: http://github.com/guides/git-cheat-sheet
.. _pro git book: http://progit.org/
.. _git svn crash course: http://git-scm.com/course/svn.html
.. _learn.github: http://learn.github.com/
.. _network graph visualizer: http://github.com/blog/39-say-hello-to-the-network-graph-visualizer
.. _git user manual: http://www.kernel.org/pub/software/scm/git/docs/user-manual.html
.. _git tutorial: http://www.kernel.org/pub/software/scm/git/docs/gittutorial.html
.. _git community book: http://book.git-scm.com/
.. _git ready: http://www.gitready.com/
.. _git casts: http://www.gitcasts.com/
.. _Fernando's git page: http://www.fperez.org/py4science/git.html
.. _git magic: http://www-cs-students.stanford.edu/~blynn/gitmagic/index.html
.. _git concepts: http://www.eecs.harvard.edu/~cduan/technical/git/
.. _git clone: http://www.kernel.org/pub/software/scm/git/docs/git-clone.html
.. _git checkout: http://www.kernel.org/pub/software/scm/git/docs/git-checkout.html
.. _git commit: http://www.kernel.org/pub/software/scm/git/docs/git-commit.html
.. _git push: http://www.kernel.org/pub/software/scm/git/docs/git-push.html
.. _git pull: http://www.kernel.org/pub/software/scm/git/docs/git-pull.html
.. _git add: http://www.kernel.org/pub/software/scm/git/docs/git-add.html
.. _git status: http://www.kernel.org/pub/software/scm/git/docs/git-status.html
.. _git diff: http://www.kernel.org/pub/software/scm/git/docs/git-diff.html
.. _git log: http://www.kernel.org/pub/software/scm/git/docs/git-log.html
.. _git branch: http://www.kernel.org/pub/software/scm/git/docs/git-branch.html
.. _git remote: http://www.kernel.org/pub/software/scm/git/docs/git-remote.html
.. _git config: http://www.kernel.org/pub/software/scm/git/docs/git-config.html
.. _why the -a flag?: http://www.gitready.com/beginner/2009/01/18/the-staging-area.html
.. _git staging area: http://www.gitready.com/beginner/2009/01/18/the-staging-area.html
.. _git management: http://kerneltrap.org/Linux/Git_Management
.. _linux git workflow: http://www.mail-archive.com/dri-devel@lists.sourceforge.net/msg39091.html
.. _git parable: http://tom.preston-werner.com/2009/05/19/the-git-parable.html