##// END OF EJS Templates
don't automatically add jobarray or queue lines to user template...
don't automatically add jobarray or queue lines to user template In parallel launchers, the queue and jobarray lines should not be added except in the default templates. user-templates must be fully specified. This prevents conflicts between PBS versions, which may not support jobarrays, etc. These lines are now only added to the *default* templates.

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baseapp.py
266 lines | 9.1 KiB | text/x-python | PythonLexer
#!/usr/bin/env python
# encoding: utf-8
"""
The Base Application class for IPython.parallel apps
Authors:
* Brian Granger
* Min RK
"""
#-----------------------------------------------------------------------------
# Copyright (C) 2008-2011 The IPython Development Team
#
# Distributed under the terms of the BSD License. The full license is in
# the file COPYING, distributed as part of this software.
#-----------------------------------------------------------------------------
#-----------------------------------------------------------------------------
# Imports
#-----------------------------------------------------------------------------
from __future__ import with_statement
import os
import logging
import re
import sys
from subprocess import Popen, PIPE
from IPython.core import release
from IPython.core.crashhandler import CrashHandler
from IPython.core.application import (
BaseIPythonApplication,
base_aliases as base_ip_aliases,
base_flags as base_ip_flags
)
from IPython.utils.path import expand_path
from IPython.utils.traitlets import Unicode, Bool, Instance, Dict, List
#-----------------------------------------------------------------------------
# Module errors
#-----------------------------------------------------------------------------
class PIDFileError(Exception):
pass
#-----------------------------------------------------------------------------
# Crash handler for this application
#-----------------------------------------------------------------------------
_message_template = """\
Oops, $self.app_name crashed. We do our best to make it stable, but...
A crash report was automatically generated with the following information:
- A verbatim copy of the crash traceback.
- Data on your current $self.app_name configuration.
It was left in the file named:
\t'$self.crash_report_fname'
If you can email this file to the developers, the information in it will help
them in understanding and correcting the problem.
You can mail it to: $self.contact_name at $self.contact_email
with the subject '$self.app_name Crash Report'.
If you want to do it now, the following command will work (under Unix):
mail -s '$self.app_name Crash Report' $self.contact_email < $self.crash_report_fname
To ensure accurate tracking of this issue, please file a report about it at:
$self.bug_tracker
"""
class ParallelCrashHandler(CrashHandler):
"""sys.excepthook for IPython itself, leaves a detailed report on disk."""
message_template = _message_template
def __init__(self, app):
contact_name = release.authors['Min'][0]
contact_email = release.authors['Min'][1]
bug_tracker = 'http://github.com/ipython/ipython/issues'
super(ParallelCrashHandler,self).__init__(
app, contact_name, contact_email, bug_tracker
)
#-----------------------------------------------------------------------------
# Main application
#-----------------------------------------------------------------------------
base_aliases = {}
base_aliases.update(base_ip_aliases)
base_aliases.update({
'profile_dir' : 'ProfileDir.location',
'work_dir' : 'BaseParallelApplication.work_dir',
'log_to_file' : 'BaseParallelApplication.log_to_file',
'clean_logs' : 'BaseParallelApplication.clean_logs',
'log_url' : 'BaseParallelApplication.log_url',
})
base_flags = {
'log-to-file' : (
{'BaseParallelApplication' : {'log_to_file' : True}},
"send log output to a file"
)
}
base_flags.update(base_ip_flags)
class BaseParallelApplication(BaseIPythonApplication):
"""The base Application for IPython.parallel apps
Principle extensions to BaseIPyythonApplication:
* work_dir
* remote logging via pyzmq
* IOLoop instance
"""
crash_handler_class = ParallelCrashHandler
def _log_level_default(self):
# temporarily override default_log_level to INFO
return logging.INFO
work_dir = Unicode(os.getcwdu(), config=True,
help='Set the working dir for the process.'
)
def _work_dir_changed(self, name, old, new):
self.work_dir = unicode(expand_path(new))
log_to_file = Bool(config=True,
help="whether to log to a file")
clean_logs = Bool(False, config=True,
help="whether to cleanup old logfiles before starting")
log_url = Unicode('', config=True,
help="The ZMQ URL of the iplogger to aggregate logging.")
def _config_files_default(self):
return ['ipcontroller_config.py', 'ipengine_config.py', 'ipcluster_config.py']
loop = Instance('zmq.eventloop.ioloop.IOLoop')
def _loop_default(self):
from zmq.eventloop.ioloop import IOLoop
return IOLoop.instance()
aliases = Dict(base_aliases)
flags = Dict(base_flags)
def initialize(self, argv=None):
"""initialize the app"""
super(BaseParallelApplication, self).initialize(argv)
self.to_work_dir()
self.reinit_logging()
def to_work_dir(self):
wd = self.work_dir
if unicode(wd) != os.getcwdu():
os.chdir(wd)
self.log.info("Changing to working dir: %s" % wd)
# This is the working dir by now.
sys.path.insert(0, '')
def reinit_logging(self):
# Remove old log files
log_dir = self.profile_dir.log_dir
if self.clean_logs:
for f in os.listdir(log_dir):
if re.match(r'%s-\d+\.(log|err|out)'%self.name,f):
os.remove(os.path.join(log_dir, f))
if self.log_to_file:
# Start logging to the new log file
log_filename = self.name + u'-' + str(os.getpid()) + u'.log'
logfile = os.path.join(log_dir, log_filename)
open_log_file = open(logfile, 'w')
else:
open_log_file = None
if open_log_file is not None:
self.log.removeHandler(self._log_handler)
self._log_handler = logging.StreamHandler(open_log_file)
self._log_formatter = logging.Formatter("[%(name)s] %(message)s")
self._log_handler.setFormatter(self._log_formatter)
self.log.addHandler(self._log_handler)
def write_pid_file(self, overwrite=False):
"""Create a .pid file in the pid_dir with my pid.
This must be called after pre_construct, which sets `self.pid_dir`.
This raises :exc:`PIDFileError` if the pid file exists already.
"""
pid_file = os.path.join(self.profile_dir.pid_dir, self.name + u'.pid')
if os.path.isfile(pid_file):
pid = self.get_pid_from_file()
if not overwrite:
raise PIDFileError(
'The pid file [%s] already exists. \nThis could mean that this '
'server is already running with [pid=%s].' % (pid_file, pid)
)
with open(pid_file, 'w') as f:
self.log.info("Creating pid file: %s" % pid_file)
f.write(repr(os.getpid())+'\n')
def remove_pid_file(self):
"""Remove the pid file.
This should be called at shutdown by registering a callback with
:func:`reactor.addSystemEventTrigger`. This needs to return
``None``.
"""
pid_file = os.path.join(self.profile_dir.pid_dir, self.name + u'.pid')
if os.path.isfile(pid_file):
try:
self.log.info("Removing pid file: %s" % pid_file)
os.remove(pid_file)
except:
self.log.warn("Error removing the pid file: %s" % pid_file)
def get_pid_from_file(self):
"""Get the pid from the pid file.
If the pid file doesn't exist a :exc:`PIDFileError` is raised.
"""
pid_file = os.path.join(self.profile_dir.pid_dir, self.name + u'.pid')
if os.path.isfile(pid_file):
with open(pid_file, 'r') as f:
s = f.read().strip()
try:
pid = int(s)
except:
raise PIDFileError("invalid pid file: %s (contents: %r)"%(pid_file, s))
return pid
else:
raise PIDFileError('pid file not found: %s' % pid_file)
def check_pid(self, pid):
if os.name == 'nt':
try:
import ctypes
# returns 0 if no such process (of ours) exists
# positive int otherwise
p = ctypes.windll.kernel32.OpenProcess(1,0,pid)
except Exception:
self.log.warn(
"Could not determine whether pid %i is running via `OpenProcess`. "
" Making the likely assumption that it is."%pid
)
return True
return bool(p)
else:
try:
p = Popen(['ps','x'], stdout=PIPE, stderr=PIPE)
output,_ = p.communicate()
except OSError:
self.log.warn(
"Could not determine whether pid %i is running via `ps x`. "
" Making the likely assumption that it is."%pid
)
return True
pids = map(int, re.findall(r'^\W*\d+', output, re.MULTILINE))
return pid in pids