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general parallel code cleanup
general parallel code cleanup

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streamkernel.py
498 lines | 17.9 KiB | text/x-python | PythonLexer
#!/usr/bin/env python
"""
Kernel adapted from kernel.py to use ZMQ Streams
"""
from __future__ import print_function
import __builtin__
import os
import sys
import time
import traceback
from signal import SIGTERM, SIGKILL
from pprint import pprint
from code import CommandCompiler
import zmq
from zmq.eventloop import ioloop, zmqstream
from IPython.zmq.completer import KernelCompleter
from streamsession import StreamSession, Message, extract_header, serialize_object,\
unpack_apply_message
from dependency import UnmetDependency
def printer(*args):
pprint(args)
class OutStream(object):
"""A file like object that publishes the stream to a 0MQ PUB socket."""
def __init__(self, session, pub_socket, name, max_buffer=200):
self.session = session
self.pub_socket = pub_socket
self.name = name
self._buffer = []
self._buffer_len = 0
self.max_buffer = max_buffer
self.parent_header = {}
def set_parent(self, parent):
self.parent_header = extract_header(parent)
def close(self):
self.pub_socket = None
def flush(self):
if self.pub_socket is None:
raise ValueError(u'I/O operation on closed file')
else:
if self._buffer:
data = ''.join(self._buffer)
content = {u'name':self.name, u'data':data}
# msg = self.session.msg(u'stream', content=content,
# parent=self.parent_header)
msg = self.session.send(self.pub_socket, u'stream', content=content, parent=self.parent_header)
# print>>sys.__stdout__, Message(msg)
# self.pub_socket.send_json(msg)
self._buffer_len = 0
self._buffer = []
def isattr(self):
return False
def next(self):
raise IOError('Read not supported on a write only stream.')
def read(self, size=None):
raise IOError('Read not supported on a write only stream.')
readline=read
def write(self, s):
if self.pub_socket is None:
raise ValueError('I/O operation on closed file')
else:
self._buffer.append(s)
self._buffer_len += len(s)
self._maybe_send()
def _maybe_send(self):
if '\n' in self._buffer[-1]:
self.flush()
if self._buffer_len > self.max_buffer:
self.flush()
def writelines(self, sequence):
if self.pub_socket is None:
raise ValueError('I/O operation on closed file')
else:
for s in sequence:
self.write(s)
class DisplayHook(object):
def __init__(self, session, pub_socket):
self.session = session
self.pub_socket = pub_socket
self.parent_header = {}
def __call__(self, obj):
if obj is None:
return
__builtin__._ = obj
# msg = self.session.msg(u'pyout', {u'data':repr(obj)},
# parent=self.parent_header)
# self.pub_socket.send_json(msg)
self.session.send(self.pub_socket, u'pyout', content={u'data':repr(obj)}, parent=self.parent_header)
def set_parent(self, parent):
self.parent_header = extract_header(parent)
class RawInput(object):
def __init__(self, session, socket):
self.session = session
self.socket = socket
def __call__(self, prompt=None):
msg = self.session.msg(u'raw_input')
self.socket.send_json(msg)
while True:
try:
reply = self.socket.recv_json(zmq.NOBLOCK)
except zmq.ZMQError as e:
if e.errno == zmq.EAGAIN:
pass
else:
raise
else:
break
return reply[u'content'][u'data']
class Kernel(object):
def __init__(self, session, control_stream, reply_stream, pub_stream,
task_stream=None, client=None):
self.session = session
self.control_stream = control_stream
# self.control_socket = control_stream.socket
self.reply_stream = reply_stream
self.task_stream = task_stream
self.pub_stream = pub_stream
self.client = client
self.user_ns = {}
self.history = []
self.compiler = CommandCompiler()
self.completer = KernelCompleter(self.user_ns)
self.aborted = set()
# Build dict of handlers for message types
self.queue_handlers = {}
self.control_handlers = {}
for msg_type in ['execute_request', 'complete_request', 'apply_request']:
self.queue_handlers[msg_type] = getattr(self, msg_type)
for msg_type in ['kill_request', 'abort_request']+self.queue_handlers.keys():
self.control_handlers[msg_type] = getattr(self, msg_type)
#-------------------- control handlers -----------------------------
def abort_queues(self):
for stream in (self.task_stream, self.reply_stream):
if stream:
self.abort_queue(stream)
def abort_queue(self, stream):
while True:
try:
msg = self.session.recv(stream, zmq.NOBLOCK,content=True)
except zmq.ZMQError as e:
if e.errno == zmq.EAGAIN:
break
else:
return
else:
if msg is None:
return
else:
idents,msg = msg
# assert self.reply_socketly_socket.rcvmore(), "Unexpected missing message part."
# msg = self.reply_socket.recv_json()
print ("Aborting:", file=sys.__stdout__)
print (Message(msg), file=sys.__stdout__)
msg_type = msg['msg_type']
reply_type = msg_type.split('_')[0] + '_reply'
# reply_msg = self.session.msg(reply_type, {'status' : 'aborted'}, msg)
# self.reply_socket.send(ident,zmq.SNDMORE)
# self.reply_socket.send_json(reply_msg)
reply_msg = self.session.send(stream, reply_type,
content={'status' : 'aborted'}, parent=msg, ident=idents)[0]
print(Message(reply_msg), file=sys.__stdout__)
# We need to wait a bit for requests to come in. This can probably
# be set shorter for true asynchronous clients.
time.sleep(0.05)
def abort_request(self, stream, ident, parent):
"""abort a specifig msg by id"""
msg_ids = parent['content'].get('msg_ids', None)
if isinstance(msg_ids, basestring):
msg_ids = [msg_ids]
if not msg_ids:
self.abort_queues()
for mid in msg_ids:
self.aborted.add(str(mid))
content = dict(status='ok')
reply_msg = self.session.send(stream, 'abort_reply', content=content,
parent=parent, ident=ident)[0]
print(Message(reply_msg), file=sys.__stdout__)
def kill_request(self, stream, idents, parent):
"""kill ourselves. This should really be handled in an external process"""
self.abort_queues()
msg = self.session.send(stream, 'kill_reply', ident=idents, parent=parent,
content = dict(status='ok'))
# we can know that a message is done if we *don't* use streams, but
# use a socket directly with MessageTracker
time.sleep(.5)
os.kill(os.getpid(), SIGTERM)
time.sleep(1)
os.kill(os.getpid(), SIGKILL)
def dispatch_control(self, msg):
idents,msg = self.session.feed_identities(msg, copy=False)
msg = self.session.unpack_message(msg, content=True, copy=False)
header = msg['header']
msg_id = header['msg_id']
handler = self.control_handlers.get(msg['msg_type'], None)
if handler is None:
print ("UNKNOWN CONTROL MESSAGE TYPE:", msg, file=sys.__stderr__)
else:
handler(self.control_stream, idents, msg)
#-------------------- queue helpers ------------------------------
def check_dependencies(self, dependencies):
if not dependencies:
return True
if len(dependencies) == 2 and dependencies[0] in 'any all'.split():
anyorall = dependencies[0]
dependencies = dependencies[1]
else:
anyorall = 'all'
results = self.client.get_results(dependencies,status_only=True)
if results['status'] != 'ok':
return False
if anyorall == 'any':
if not results['completed']:
return False
else:
if results['pending']:
return False
return True
def check_aborted(self, msg_id):
return msg_id in self.aborted
#-------------------- queue handlers -----------------------------
def execute_request(self, stream, ident, parent):
try:
code = parent[u'content'][u'code']
except:
print("Got bad msg: ", file=sys.__stderr__)
print(Message(parent), file=sys.__stderr__)
return
# pyin_msg = self.session.msg(u'pyin',{u'code':code}, parent=parent)
# self.pub_stream.send(pyin_msg)
self.session.send(self.pub_stream, u'pyin', {u'code':code},parent=parent)
try:
comp_code = self.compiler(code, '<zmq-kernel>')
# allow for not overriding displayhook
if hasattr(sys.displayhook, 'set_parent'):
sys.displayhook.set_parent(parent)
exec comp_code in self.user_ns, self.user_ns
except:
# result = u'error'
etype, evalue, tb = sys.exc_info()
tb = traceback.format_exception(etype, evalue, tb)
exc_content = {
u'status' : u'error',
u'traceback' : tb,
u'etype' : unicode(etype),
u'evalue' : unicode(evalue)
}
# exc_msg = self.session.msg(u'pyerr', exc_content, parent)
self.session.send(self.pub_stream, u'pyerr', exc_content, parent=parent)
reply_content = exc_content
else:
reply_content = {'status' : 'ok'}
# reply_msg = self.session.msg(u'execute_reply', reply_content, parent)
# self.reply_socket.send(ident, zmq.SNDMORE)
# self.reply_socket.send_json(reply_msg)
reply_msg = self.session.send(stream, u'execute_reply', reply_content, parent=parent, ident=ident)
print(Message(reply_msg), file=sys.__stdout__)
if reply_msg['content']['status'] == u'error':
self.abort_queues()
def complete_request(self, stream, ident, parent):
matches = {'matches' : self.complete(parent),
'status' : 'ok'}
completion_msg = self.session.send(stream, 'complete_reply',
matches, parent, ident)
# print >> sys.__stdout__, completion_msg
def complete(self, msg):
return self.completer.complete(msg.content.line, msg.content.text)
def apply_request(self, stream, ident, parent):
print (parent)
try:
content = parent[u'content']
bufs = parent[u'buffers']
msg_id = parent['header']['msg_id']
bound = content.get('bound', False)
except:
print("Got bad msg: ", file=sys.__stderr__)
print(Message(parent), file=sys.__stderr__)
return
# pyin_msg = self.session.msg(u'pyin',{u'code':code}, parent=parent)
# self.pub_stream.send(pyin_msg)
# self.session.send(self.pub_stream, u'pyin', {u'code':code},parent=parent)
sub = {'dependencies_met' : True}
try:
# allow for not overriding displayhook
if hasattr(sys.displayhook, 'set_parent'):
sys.displayhook.set_parent(parent)
# exec "f(*args,**kwargs)" in self.user_ns, self.user_ns
if bound:
working = self.user_ns
suffix = str(msg_id).replace("-","")
prefix = "_"
else:
working = dict()
suffix = prefix = "_" # prevent keyword collisions with lambda
f,args,kwargs = unpack_apply_message(bufs, working, copy=False)
# if f.fun
fname = prefix+f.func_name.strip('<>')+suffix
argname = prefix+"args"+suffix
kwargname = prefix+"kwargs"+suffix
resultname = prefix+"result"+suffix
ns = { fname : f, argname : args, kwargname : kwargs }
# print ns
working.update(ns)
code = "%s=%s(*%s,**%s)"%(resultname, fname, argname, kwargname)
exec code in working, working
result = working.get(resultname)
# clear the namespace
if bound:
for key in ns.iterkeys():
self.user_ns.pop(key)
else:
del working
packed_result,buf = serialize_object(result)
result_buf = [packed_result]+buf
except:
result = u'error'
etype, evalue, tb = sys.exc_info()
tb = traceback.format_exception(etype, evalue, tb)
exc_content = {
u'status' : u'error',
u'traceback' : tb,
u'etype' : unicode(etype),
u'evalue' : unicode(evalue)
}
# exc_msg = self.session.msg(u'pyerr', exc_content, parent)
self.session.send(self.pub_stream, u'pyerr', exc_content, parent=parent)
reply_content = exc_content
result_buf = []
if etype is UnmetDependency:
sub = {'dependencies_met' : False}
else:
reply_content = {'status' : 'ok'}
# reply_msg = self.session.msg(u'execute_reply', reply_content, parent)
# self.reply_socket.send(ident, zmq.SNDMORE)
# self.reply_socket.send_json(reply_msg)
reply_msg = self.session.send(stream, u'apply_reply', reply_content,
parent=parent, ident=ident,buffers=result_buf, subheader=sub)
print(Message(reply_msg), file=sys.__stdout__)
# if reply_msg['content']['status'] == u'error':
# self.abort_queues()
def dispatch_queue(self, stream, msg):
self.control_stream.flush()
idents,msg = self.session.feed_identities(msg, copy=False)
msg = self.session.unpack_message(msg, content=True, copy=False)
header = msg['header']
msg_id = header['msg_id']
if self.check_aborted(msg_id):
self.aborted.remove(msg_id)
# is it safe to assume a msg_id will not be resubmitted?
reply_type = msg['msg_type'].split('_')[0] + '_reply'
reply_msg = self.session.send(stream, reply_type,
content={'status' : 'aborted'}, parent=msg, ident=idents)
return
handler = self.queue_handlers.get(msg['msg_type'], None)
if handler is None:
print ("UNKNOWN MESSAGE TYPE:", msg, file=sys.__stderr__)
else:
handler(stream, idents, msg)
def start(self):
#### stream mode:
if self.control_stream:
self.control_stream.on_recv(self.dispatch_control, copy=False)
self.control_stream.on_err(printer)
if self.reply_stream:
self.reply_stream.on_recv(lambda msg:
self.dispatch_queue(self.reply_stream, msg), copy=False)
self.reply_stream.on_err(printer)
if self.task_stream:
self.task_stream.on_recv(lambda msg:
self.dispatch_queue(self.task_stream, msg), copy=False)
self.task_stream.on_err(printer)
#### while True mode:
# while True:
# idle = True
# try:
# msg = self.reply_stream.socket.recv_multipart(
# zmq.NOBLOCK, copy=False)
# except zmq.ZMQError, e:
# if e.errno != zmq.EAGAIN:
# raise e
# else:
# idle=False
# self.dispatch_queue(self.reply_stream, msg)
#
# if not self.task_stream.empty():
# idle=False
# msg = self.task_stream.recv_multipart()
# self.dispatch_queue(self.task_stream, msg)
# if idle:
# # don't busywait
# time.sleep(1e-3)
def main():
raise Exception("Don't run me anymore")
loop = ioloop.IOLoop.instance()
c = zmq.Context()
ip = '127.0.0.1'
port_base = 5575
connection = ('tcp://%s' % ip) + ':%i'
rep_conn = connection % port_base
pub_conn = connection % (port_base+1)
print("Starting the kernel...", file=sys.__stdout__)
# print >>sys.__stdout__, "XREQ Channel:", rep_conn
# print >>sys.__stdout__, "PUB Channel:", pub_conn
session = StreamSession(username=u'kernel')
reply_socket = c.socket(zmq.XREQ)
reply_socket.connect(rep_conn)
pub_socket = c.socket(zmq.PUB)
pub_socket.connect(pub_conn)
stdout = OutStream(session, pub_socket, u'stdout')
stderr = OutStream(session, pub_socket, u'stderr')
sys.stdout = stdout
sys.stderr = stderr
display_hook = DisplayHook(session, pub_socket)
sys.displayhook = display_hook
reply_stream = zmqstream.ZMQStream(reply_socket,loop)
pub_stream = zmqstream.ZMQStream(pub_socket,loop)
kernel = Kernel(session, reply_stream, pub_stream)
# For debugging convenience, put sleep and a string in the namespace, so we
# have them every time we start.
kernel.user_ns['sleep'] = time.sleep
kernel.user_ns['s'] = 'Test string'
print ("Use Ctrl-\\ (NOT Ctrl-C!) to terminate.", file=sys.__stdout__)
kernel.start()
loop.start()
if __name__ == '__main__':
main()