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Changing references to mpirun to mpiexec in docs.
Changing references to mpirun to mpiexec in docs.

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initial_config.txt
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.. _initial config:
=========================================
Initial configuration of your environment
=========================================
This section will help you set various things in your environment for
your IPython sessions to be as efficient as possible. All of IPython's
configuration information, along with several example files, is stored
in a directory named by default $HOME/.ipython. You can change this by
defining the environment variable IPYTHONDIR, or at runtime with the
command line option -ipythondir.
If all goes well, the first time you run IPython it should automatically create
a user copy of the config directory for you, based on its builtin defaults. You
can look at the files it creates to learn more about configuring the
system. The main file you will modify to configure IPython's behavior is called
ipythonrc (with a .ini extension under Windows), included for reference
:ref:`here <ipythonrc>`. This file is very commented and has many variables you
can change to suit your taste, you can find more details :ref:`here
<customization>`. Here we discuss the basic things you will want to make sure
things are working properly from the beginning.
.. _accessing_help:
Access to the Python help system
================================
This is true for Python in general (not just for IPython): you should have an
environment variable called PYTHONDOCS pointing to the directory where your
HTML Python documentation lives. In my system it's
:file:`/usr/share/doc/python-doc/html`, check your local details or ask your
systems administrator.
This is the directory which holds the HTML version of the Python
manuals. Unfortunately it seems that different Linux distributions
package these files differently, so you may have to look around a bit.
Below I show the contents of this directory on my system for reference::
[html]> ls
about.html dist/ icons/ lib/ python2.5.devhelp.gz whatsnew/
acks.html doc/ index.html mac/ ref/
api/ ext/ inst/ modindex.html tut/
You should really make sure this variable is correctly set so that
Python's pydoc-based help system works. It is a powerful and convenient
system with full access to the Python manuals and all modules accessible
to you.
Under Windows it seems that pydoc finds the documentation automatically,
so no extra setup appears necessary.
Editor
======
The %edit command (and its alias %ed) will invoke the editor set in your
environment as EDITOR. If this variable is not set, it will default to
vi under Linux/Unix and to notepad under Windows. You may want to set
this variable properly and to a lightweight editor which doesn't take
too long to start (that is, something other than a new instance of
Emacs). This way you can edit multi-line code quickly and with the power
of a real editor right inside IPython.
If you are a dedicated Emacs user, you should set up the Emacs server so
that new requests are handled by the original process. This means that
almost no time is spent in handling the request (assuming an Emacs
process is already running). For this to work, you need to set your
EDITOR environment variable to 'emacsclient'. The code below, supplied
by Francois Pinard, can then be used in your .emacs file to enable the
server::
(defvar server-buffer-clients)
(when (and (fboundp 'server-start) (string-equal (getenv "TERM") 'xterm))
(server-start)
(defun fp-kill-server-with-buffer-routine ()
(and server-buffer-clients (server-done)))
(add-hook 'kill-buffer-hook 'fp-kill-server-with-buffer-routine))
You can also set the value of this editor via the commmand-line option
'-editor' or in your ipythonrc file. This is useful if you wish to use
specifically for IPython an editor different from your typical default
(and for Windows users who tend to use fewer environment variables).
Color
=====
The default IPython configuration has most bells and whistles turned on
(they're pretty safe). But there's one that may cause problems on some
systems: the use of color on screen for displaying information. This is
very useful, since IPython can show prompts and exception tracebacks
with various colors, display syntax-highlighted source code, and in
general make it easier to visually parse information.
The following terminals seem to handle the color sequences fine:
* Linux main text console, KDE Konsole, Gnome Terminal, E-term,
rxvt, xterm.
* CDE terminal (tested under Solaris). This one boldfaces light colors.
* (X)Emacs buffers. See the emacs_ section for more details on
using IPython with (X)Emacs.
* A Windows (XP/2k) command prompt with pyreadline_.
* A Windows (XP/2k) CygWin shell. Although some users have reported
problems; it is not clear whether there is an issue for everyone
or only under specific configurations. If you have full color
support under cygwin, please post to the IPython mailing list so
this issue can be resolved for all users.
.. _pyreadline: https://code.launchpad.net/pyreadline
These have shown problems:
* Windows command prompt in WinXP/2k logged into a Linux machine via
telnet or ssh.
* Windows native command prompt in WinXP/2k, without Gary Bishop's
extensions. Once Gary's readline library is installed, the normal
WinXP/2k command prompt works perfectly.
Currently the following color schemes are available:
* NoColor: uses no color escapes at all (all escapes are empty '' ''
strings). This 'scheme' is thus fully safe to use in any terminal.
* Linux: works well in Linux console type environments: dark
background with light fonts. It uses bright colors for
information, so it is difficult to read if you have a light
colored background.
* LightBG: the basic colors are similar to those in the Linux scheme
but darker. It is easy to read in terminals with light backgrounds.
IPython uses colors for two main groups of things: prompts and
tracebacks which are directly printed to the terminal, and the object
introspection system which passes large sets of data through a pager.
Input/Output prompts and exception tracebacks
=============================================
You can test whether the colored prompts and tracebacks work on your
system interactively by typing '%colors Linux' at the prompt (use
'%colors LightBG' if your terminal has a light background). If the input
prompt shows garbage like::
[0;32mIn [[1;32m1[0;32m]: [0;00m
instead of (in color) something like::
In [1]:
this means that your terminal doesn't properly handle color escape
sequences. You can go to a 'no color' mode by typing '%colors NoColor'.
You can try using a different terminal emulator program (Emacs users,
see below). To permanently set your color preferences, edit the file
$HOME/.ipython/ipythonrc and set the colors option to the desired value.
Object details (types, docstrings, source code, etc.)
=====================================================
IPython has a set of special functions for studying the objects you are working
with, discussed in detail :ref:`here <dynamic_object_info>`. But this system
relies on passing information which is longer than your screen through a data
pager, such as the common Unix less and more programs. In order to be able to
see this information in color, your pager needs to be properly configured. I
strongly recommend using less instead of more, as it seems that more simply can
not understand colored text correctly.
In order to configure less as your default pager, do the following:
1. Set the environment PAGER variable to less.
2. Set the environment LESS variable to -r (plus any other options
you always want to pass to less by default). This tells less to
properly interpret control sequences, which is how color
information is given to your terminal.
For the csh or tcsh shells, add to your ~/.cshrc file the lines::
setenv PAGER less
setenv LESS -r
There is similar syntax for other Unix shells, look at your system
documentation for details.
If you are on a system which lacks proper data pagers (such as Windows),
IPython will use a very limited builtin pager.
.. _emacs:
(X)Emacs configuration
======================
Thanks to the work of Alexander Schmolck and Prabhu Ramachandran,
currently (X)Emacs and IPython get along very well.
Important note: You will need to use a recent enough version of
python-mode.el, along with the file ipython.el. You can check that the
version you have of python-mode.el is new enough by either looking at
the revision number in the file itself, or asking for it in (X)Emacs via
M-x py-version. Versions 4.68 and newer contain the necessary fixes for
proper IPython support.
The file ipython.el is included with the IPython distribution, in the
documentation directory (where this manual resides in PDF and HTML
formats).
Once you put these files in your Emacs path, all you need in your .emacs
file is::
(require 'ipython)
This should give you full support for executing code snippets via
IPython, opening IPython as your Python shell via ``C-c !``, etc.
You can customize the arguments passed to the IPython instance at startup by
setting the ``py-python-command-args`` variable. For example, to start always
in ``pylab`` mode with hardcoded light-background colors, you can use::
(setq py-python-command-args '("-pylab" "-colors" "LightBG"))
If you happen to get garbage instead of colored prompts as described in
the previous section, you may need to set also in your .emacs file::
(setq ansi-color-for-comint-mode t)
Notes:
* There is one caveat you should be aware of: you must start the
IPython shell before attempting to execute any code regions via
``C-c |``. Simply type C-c ! to start IPython before passing any code
regions to the interpreter, and you shouldn't experience any
problems.
This is due to a bug in Python itself, which has been fixed for
Python 2.3, but exists as of Python 2.2.2 (reported as SF bug [
737947 ]).
* The (X)Emacs support is maintained by Alexander Schmolck, so all
comments/requests should be directed to him through the IPython
mailing lists.
* This code is still somewhat experimental so it's a bit rough
around the edges (although in practice, it works quite well).
* Be aware that if you customize py-python-command previously, this
value will override what ipython.el does (because loading the
customization variables comes later).