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Finish doc/build tools cleanup....
Finish doc/build tools cleanup. Fix small stderr flush error in exception reporting. Final fixes to cpaste to support doctests.

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README.txt
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Current version information
---------------------------
Please open manual.pdf for a PDF version of IPython's user manual, or go to
the manual/ directory for an HTML version.
Bugs and future developments
----------------------------
The new_design.pdf document is a description of the goals for IPython's future
development. It includes a TODO/bugs section listing all currently known bugs
in IPython. Please report any bug you encounter if it is not already listed
there.