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Clone from https://github.com/ipython/ipython.git

Moved a few things back to InteractiveShell....

Moved a few things back to InteractiveShell. The following attributes were still needed in the base InteractiveShell class. * autoindent. This is used in runlines. * separate_in, separate_out, separate_out2 are used in prompt management. Eventually these things should be refactored and moved to the frontends, just not yet.

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