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Add R magic to the docs.
Add R magic to the docs.

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test_magic.py
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# -*- coding: utf-8 -*-
"""Tests for various magic functions.
Needs to be run by nose (to make ipython session available).
"""
from __future__ import absolute_import
#-----------------------------------------------------------------------------
# Imports
#-----------------------------------------------------------------------------
import io
import os
import sys
from StringIO import StringIO
from unittest import TestCase
try:
from importlib import invalidate_caches # Required from Python 3.3
except ImportError:
def invalidate_caches():
pass
import nose.tools as nt
from IPython.core import magic
from IPython.core.magic import (Magics, magics_class, line_magic,
cell_magic, line_cell_magic,
register_line_magic, register_cell_magic,
register_line_cell_magic)
from IPython.core.magics import execution
from IPython.nbformat.v3.tests.nbexamples import nb0
from IPython.nbformat import current
from IPython.testing import decorators as dec
from IPython.testing import tools as tt
from IPython.utils import py3compat
from IPython.utils.tempdir import TemporaryDirectory
#-----------------------------------------------------------------------------
# Test functions begin
#-----------------------------------------------------------------------------
@magic.magics_class
class DummyMagics(magic.Magics): pass
def test_rehashx():
# clear up everything
_ip = get_ipython()
_ip.alias_manager.alias_table.clear()
del _ip.db['syscmdlist']
_ip.magic('rehashx')
# Practically ALL ipython development systems will have more than 10 aliases
yield (nt.assert_true, len(_ip.alias_manager.alias_table) > 10)
for key, val in _ip.alias_manager.alias_table.iteritems():
# we must strip dots from alias names
nt.assert_true('.' not in key)
# rehashx must fill up syscmdlist
scoms = _ip.db['syscmdlist']
yield (nt.assert_true, len(scoms) > 10)
def test_magic_parse_options():
"""Test that we don't mangle paths when parsing magic options."""
ip = get_ipython()
path = 'c:\\x'
m = DummyMagics(ip)
opts = m.parse_options('-f %s' % path,'f:')[0]
# argv splitting is os-dependent
if os.name == 'posix':
expected = 'c:x'
else:
expected = path
nt.assert_equals(opts['f'], expected)
def test_magic_parse_long_options():
"""Magic.parse_options can handle --foo=bar long options"""
ip = get_ipython()
m = DummyMagics(ip)
opts, _ = m.parse_options('--foo --bar=bubble', 'a', 'foo', 'bar=')
nt.assert_true('foo' in opts)
nt.assert_true('bar' in opts)
nt.assert_true(opts['bar'], "bubble")
@dec.skip_without('sqlite3')
def doctest_hist_f():
"""Test %hist -f with temporary filename.
In [9]: import tempfile
In [10]: tfile = tempfile.mktemp('.py','tmp-ipython-')
In [11]: %hist -nl -f $tfile 3
In [13]: import os; os.unlink(tfile)
"""
@dec.skip_without('sqlite3')
def doctest_hist_r():
"""Test %hist -r
XXX - This test is not recording the output correctly. For some reason, in
testing mode the raw history isn't getting populated. No idea why.
Disabling the output checking for now, though at least we do run it.
In [1]: 'hist' in _ip.lsmagic()
Out[1]: True
In [2]: x=1
In [3]: %hist -rl 2
x=1 # random
%hist -r 2
"""
@dec.skip_without('sqlite3')
def doctest_hist_op():
"""Test %hist -op
In [1]: class b(float):
...: pass
...:
In [2]: class s(object):
...: def __str__(self):
...: return 's'
...:
In [3]:
In [4]: class r(b):
...: def __repr__(self):
...: return 'r'
...:
In [5]: class sr(s,r): pass
...:
In [6]:
In [7]: bb=b()
In [8]: ss=s()
In [9]: rr=r()
In [10]: ssrr=sr()
In [11]: 4.5
Out[11]: 4.5
In [12]: str(ss)
Out[12]: 's'
In [13]:
In [14]: %hist -op
>>> class b:
... pass
...
>>> class s(b):
... def __str__(self):
... return 's'
...
>>>
>>> class r(b):
... def __repr__(self):
... return 'r'
...
>>> class sr(s,r): pass
>>>
>>> bb=b()
>>> ss=s()
>>> rr=r()
>>> ssrr=sr()
>>> 4.5
4.5
>>> str(ss)
's'
>>>
"""
@dec.skip_without('sqlite3')
def test_macro():
ip = get_ipython()
ip.history_manager.reset() # Clear any existing history.
cmds = ["a=1", "def b():\n return a**2", "print(a,b())"]
for i, cmd in enumerate(cmds, start=1):
ip.history_manager.store_inputs(i, cmd)
ip.magic("macro test 1-3")
nt.assert_equal(ip.user_ns["test"].value, "\n".join(cmds)+"\n")
# List macros.
assert "test" in ip.magic("macro")
@dec.skip_without('sqlite3')
def test_macro_run():
"""Test that we can run a multi-line macro successfully."""
ip = get_ipython()
ip.history_manager.reset()
cmds = ["a=10", "a+=1", py3compat.doctest_refactor_print("print a"),
"%macro test 2-3"]
for cmd in cmds:
ip.run_cell(cmd, store_history=True)
nt.assert_equal(ip.user_ns["test"].value,
py3compat.doctest_refactor_print("a+=1\nprint a\n"))
with tt.AssertPrints("12"):
ip.run_cell("test")
with tt.AssertPrints("13"):
ip.run_cell("test")
@dec.skipif_not_numpy
def test_numpy_reset_array_undec():
"Test '%reset array' functionality"
_ip.ex('import numpy as np')
_ip.ex('a = np.empty(2)')
yield (nt.assert_true, 'a' in _ip.user_ns)
_ip.magic('reset -f array')
yield (nt.assert_false, 'a' in _ip.user_ns)
def test_reset_out():
"Test '%reset out' magic"
_ip.run_cell("parrot = 'dead'", store_history=True)
# test '%reset -f out', make an Out prompt
_ip.run_cell("parrot", store_history=True)
nt.assert_true('dead' in [_ip.user_ns[x] for x in '_','__','___'])
_ip.magic('reset -f out')
nt.assert_false('dead' in [_ip.user_ns[x] for x in '_','__','___'])
nt.assert_true(len(_ip.user_ns['Out']) == 0)
def test_reset_in():
"Test '%reset in' magic"
# test '%reset -f in'
_ip.run_cell("parrot", store_history=True)
nt.assert_true('parrot' in [_ip.user_ns[x] for x in '_i','_ii','_iii'])
_ip.magic('%reset -f in')
nt.assert_false('parrot' in [_ip.user_ns[x] for x in '_i','_ii','_iii'])
nt.assert_true(len(set(_ip.user_ns['In'])) == 1)
def test_reset_dhist():
"Test '%reset dhist' magic"
_ip.run_cell("tmp = [d for d in _dh]") # copy before clearing
_ip.magic('cd ' + os.path.dirname(nt.__file__))
_ip.magic('cd -')
nt.assert_true(len(_ip.user_ns['_dh']) > 0)
_ip.magic('reset -f dhist')
nt.assert_true(len(_ip.user_ns['_dh']) == 0)
_ip.run_cell("_dh = [d for d in tmp]") #restore
def test_reset_in_length():
"Test that '%reset in' preserves In[] length"
_ip.run_cell("print 'foo'")
_ip.run_cell("reset -f in")
nt.assert_true(len(_ip.user_ns['In']) == _ip.displayhook.prompt_count+1)
def test_time():
_ip.magic('time None')
def test_tb_syntaxerror():
"""test %tb after a SyntaxError"""
ip = get_ipython()
ip.run_cell("for")
# trap and validate stdout
save_stdout = sys.stdout
try:
sys.stdout = StringIO()
ip.run_cell("%tb")
out = sys.stdout.getvalue()
finally:
sys.stdout = save_stdout
# trim output, and only check the last line
last_line = out.rstrip().splitlines()[-1].strip()
nt.assert_equals(last_line, "SyntaxError: invalid syntax")
@py3compat.doctest_refactor_print
def doctest_time():
"""
In [10]: %time None
CPU times: user 0.00 s, sys: 0.00 s, total: 0.00 s
Wall time: 0.00 s
In [11]: def f(kmjy):
....: %time print 2*kmjy
In [12]: f(3)
6
CPU times: user 0.00 s, sys: 0.00 s, total: 0.00 s
Wall time: 0.00 s
"""
def test_doctest_mode():
"Toggle doctest_mode twice, it should be a no-op and run without error"
_ip.magic('doctest_mode')
_ip.magic('doctest_mode')
def test_parse_options():
"""Tests for basic options parsing in magics."""
# These are only the most minimal of tests, more should be added later. At
# the very least we check that basic text/unicode calls work OK.
m = DummyMagics(_ip)
nt.assert_equal(m.parse_options('foo', '')[1], 'foo')
nt.assert_equal(m.parse_options(u'foo', '')[1], u'foo')
def test_dirops():
"""Test various directory handling operations."""
# curpath = lambda :os.path.splitdrive(os.getcwdu())[1].replace('\\','/')
curpath = os.getcwdu
startdir = os.getcwdu()
ipdir = os.path.realpath(_ip.ipython_dir)
try:
_ip.magic('cd "%s"' % ipdir)
nt.assert_equal(curpath(), ipdir)
_ip.magic('cd -')
nt.assert_equal(curpath(), startdir)
_ip.magic('pushd "%s"' % ipdir)
nt.assert_equal(curpath(), ipdir)
_ip.magic('popd')
nt.assert_equal(curpath(), startdir)
finally:
os.chdir(startdir)
def test_xmode():
# Calling xmode three times should be a no-op
xmode = _ip.InteractiveTB.mode
for i in range(3):
_ip.magic("xmode")
nt.assert_equal(_ip.InteractiveTB.mode, xmode)
def test_reset_hard():
monitor = []
class A(object):
def __del__(self):
monitor.append(1)
def __repr__(self):
return "<A instance>"
_ip.user_ns["a"] = A()
_ip.run_cell("a")
nt.assert_equal(monitor, [])
_ip.magic("reset -f")
nt.assert_equal(monitor, [1])
class TestXdel(tt.TempFileMixin):
def test_xdel(self):
"""Test that references from %run are cleared by xdel."""
src = ("class A(object):\n"
" monitor = []\n"
" def __del__(self):\n"
" self.monitor.append(1)\n"
"a = A()\n")
self.mktmp(src)
# %run creates some hidden references...
_ip.magic("run %s" % self.fname)
# ... as does the displayhook.
_ip.run_cell("a")
monitor = _ip.user_ns["A"].monitor
nt.assert_equal(monitor, [])
_ip.magic("xdel a")
# Check that a's __del__ method has been called.
nt.assert_equal(monitor, [1])
def doctest_who():
"""doctest for %who
In [1]: %reset -f
In [2]: alpha = 123
In [3]: beta = 'beta'
In [4]: %who int
alpha
In [5]: %who str
beta
In [6]: %whos
Variable Type Data/Info
----------------------------
alpha int 123
beta str beta
In [7]: %who_ls
Out[7]: ['alpha', 'beta']
"""
def test_whos():
"""Check that whos is protected against objects where repr() fails."""
class A(object):
def __repr__(self):
raise Exception()
_ip.user_ns['a'] = A()
_ip.magic("whos")
@py3compat.u_format
def doctest_precision():
"""doctest for %precision
In [1]: f = get_ipython().display_formatter.formatters['text/plain']
In [2]: %precision 5
Out[2]: {u}'%.5f'
In [3]: f.float_format
Out[3]: {u}'%.5f'
In [4]: %precision %e
Out[4]: {u}'%e'
In [5]: f(3.1415927)
Out[5]: {u}'3.141593e+00'
"""
def test_psearch():
with tt.AssertPrints("dict.fromkeys"):
_ip.run_cell("dict.fr*?")
def test_timeit_shlex():
"""test shlex issues with timeit (#1109)"""
_ip.ex("def f(*a,**kw): pass")
_ip.magic('timeit -n1 "this is a bug".count(" ")')
_ip.magic('timeit -r1 -n1 f(" ", 1)')
_ip.magic('timeit -r1 -n1 f(" ", 1, " ", 2, " ")')
_ip.magic('timeit -r1 -n1 ("a " + "b")')
_ip.magic('timeit -r1 -n1 f("a " + "b")')
_ip.magic('timeit -r1 -n1 f("a " + "b ")')
def test_timeit_arguments():
"Test valid timeit arguments, should not cause SyntaxError (GH #1269)"
_ip.magic("timeit ('#')")
@dec.skipif(execution.profile is None)
def test_prun_quotes():
"Test that prun does not clobber string escapes (GH #1302)"
_ip.magic("prun -q x = '\t'")
nt.assert_equal(_ip.user_ns['x'], '\t')
def test_extension():
tmpdir = TemporaryDirectory()
orig_ipython_dir = _ip.ipython_dir
try:
_ip.ipython_dir = tmpdir.name
nt.assert_raises(ImportError, _ip.magic, "load_ext daft_extension")
url = os.path.join(os.path.dirname(__file__), "daft_extension.py")
_ip.magic("install_ext %s" % url)
_ip.user_ns.pop('arq', None)
invalidate_caches() # Clear import caches
_ip.magic("load_ext daft_extension")
tt.assert_equal(_ip.user_ns['arq'], 185)
_ip.magic("unload_ext daft_extension")
assert 'arq' not in _ip.user_ns
finally:
_ip.ipython_dir = orig_ipython_dir
def test_notebook_export_json():
with TemporaryDirectory() as td:
outfile = os.path.join(td, "nb.ipynb")
_ip.ex(py3compat.u_format(u"u = {u}'héllo'"))
_ip.magic("notebook -e %s" % outfile)
def test_notebook_export_py():
with TemporaryDirectory() as td:
outfile = os.path.join(td, "nb.py")
_ip.ex(py3compat.u_format(u"u = {u}'héllo'"))
_ip.magic("notebook -e %s" % outfile)
def test_notebook_reformat_py():
with TemporaryDirectory() as td:
infile = os.path.join(td, "nb.ipynb")
with io.open(infile, 'w', encoding='utf-8') as f:
current.write(nb0, f, 'json')
_ip.ex(py3compat.u_format(u"u = {u}'héllo'"))
_ip.magic("notebook -f py %s" % infile)
def test_notebook_reformat_json():
with TemporaryDirectory() as td:
infile = os.path.join(td, "nb.py")
with io.open(infile, 'w', encoding='utf-8') as f:
current.write(nb0, f, 'py')
_ip.ex(py3compat.u_format(u"u = {u}'héllo'"))
_ip.magic("notebook -f ipynb %s" % infile)
_ip.magic("notebook -f json %s" % infile)
def test_env():
env = _ip.magic("env")
assert isinstance(env, dict), type(env)
class CellMagicTestCase(TestCase):
def check_ident(self, magic):
# Manually called, we get the result
out = _ip.run_cell_magic(magic, 'a', 'b')
nt.assert_equals(out, ('a','b'))
# Via run_cell, it goes into the user's namespace via displayhook
_ip.run_cell('%%' + magic +' c\nd')
nt.assert_equals(_ip.user_ns['_'], ('c','d'))
def test_cell_magic_func_deco(self):
"Cell magic using simple decorator"
@register_cell_magic
def cellm(line, cell):
return line, cell
self.check_ident('cellm')
def test_cell_magic_reg(self):
"Cell magic manually registered"
def cellm(line, cell):
return line, cell
_ip.register_magic_function(cellm, 'cell', 'cellm2')
self.check_ident('cellm2')
def test_cell_magic_class(self):
"Cell magics declared via a class"
@magics_class
class MyMagics(Magics):
@cell_magic
def cellm3(self, line, cell):
return line, cell
_ip.register_magics(MyMagics)
self.check_ident('cellm3')
def test_cell_magic_class2(self):
"Cell magics declared via a class, #2"
@magics_class
class MyMagics2(Magics):
@cell_magic('cellm4')
def cellm33(self, line, cell):
return line, cell
_ip.register_magics(MyMagics2)
self.check_ident('cellm4')
# Check that nothing is registered as 'cellm33'
c33 = _ip.find_cell_magic('cellm33')
nt.assert_equals(c33, None)