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promote aliases and flags, to ensure they have priority over config files...
promote aliases and flags, to ensure they have priority over config files add Application.flatten_flags() method, which adjusts the alias and flag dicts, such that they point to the subclass in the Application.classes list when passed to the argv parser. This prevents TerminalInteractiveShell.colors in a config file overriding `--colors` on the command-line, which points to InteractiveShell.colors. Flattening is only done when the answer is unambiguous, so multiply inherited classes (e.g. Launchers in ipcluster) are not touched. also remove now-obsolete manual workaround for this in IPClusterStart closes gh-849

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README.txt
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=======================================================
Nose plugin with IPython and extension module support
=======================================================
This directory provides the key functionality for test support that IPython
needs as a nose plugin, which can be installed for use in projects other than
IPython.
The presence of a Makefile here is mostly for development and debugging
purposes as it only provides a few shorthand commands. You can manually
install the plugin by using standard Python procedures (``setup.py install``
with appropriate arguments).
To install the plugin using the Makefile, edit its first line to reflect where
you'd like the installation. If you want it system-wide, you may want to edit
the install line in the plugin target to use sudo and no prefix::
sudo python setup.py install
instead of the code using `--prefix` that's in there.
Once you've set the prefix, simply build/install the plugin with::
make
and run the tests with::
make test
You should see output similar to::
maqroll[plugin]> make test
nosetests -s --with-ipdoctest --doctest-tests dtexample.py
..
----------------------------------------------------------------------
Ran 2 tests in 0.016s
OK