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3.x Series

IPython 3.1

Released April 3, 2015

The first 3.x bugfix release, with 33 contributors and 344 commits. This primarily includes bugfixes to notebook layout and focus problems.

Highlights:

  • Various focus jumping and scrolling fixes in the notebook.
  • Various message ordering and widget fixes in the notebook.
  • Images in markdown and output are confined to the notebook width. An .unconfined CSS class is added to disable this behavior per-image. The resize handle on output images is removed.
  • Improved ordering of tooltip content for Python functions, putting the signature at the top.
  • Fix UnicodeErrors when displaying some objects with unicode reprs on Python 2.
  • Set the kernel's working directory to the notebook directory when running nbconvert --execute, so that behavior matches the live notebook.
  • Allow setting custom SSL options for the tornado server with NotebookApp.ssl_options, and protect against POODLE with default settings by disabling SSLv3.
  • Fix memory leak in the IPython.parallel Controller on Python 3.

See :ref:`issues_list_3` for details.

Release 3.0

Released February 27, 2015

This is a really big release. Over 150 contributors, and almost 6000 commits in a bit under a year. Support for languages other than Python is greatly improved, notebook UI has been significantly redesigned, and a lot of improvement has happened in the experimental interactive widgets. The message protocol and document format have both been updated, while maintaining better compatibility with previous versions than prior updates. The notebook webapp now enables editing of any text file, and even a web-based terminal (on Unix platforms).

3.x will be the last monolithic release of IPython, as the next release cycle will see the growing project split into its Python-specific and language-agnostic components. Language-agnostic projects (notebook, qtconsole, etc.) will move under the umbrella of the new Project Jupyter name, while Python-specific projects (interactive Python shell, Python kernel, IPython.parallel) will remain under IPython, and be split into a few smaller packages. To reflect this, IPython is in a bit of a transition state. The logo on the notebook is now the Jupyter logo. When installing kernels system-wide, they go in a jupyter directory. We are going to do our best to ease this transition for users and developers.

Big changes are ahead.

Using different kernels

Screenshot of 'new' dropdown showing different kernels

You can now choose a kernel for a notebook within the user interface, rather than starting up a separate notebook server for each kernel you want to use. The syntax highlighting adapts to match the language you're working in.

Information about the kernel is stored in the notebook file, so when you open a notebook, it will automatically start the correct kernel.

It is also easier to use the Qt console and the terminal console with other kernels, using the --kernel flag:

ipython qtconsole --kernel bash
ipython console --kernel bash

# To list available kernels
ipython kernelspec list

Kernel authors should see :ref:`kernelspecs` for how to register their kernels with IPython so that these mechanisms work.

Typing unicode identifiers

/_images/unicode_completion.png

Complex expressions can be much cleaner when written with a wider choice of characters. Python 3 allows unicode identifiers, and IPython 3 makes it easier to type those, using a feature from Julia. Type a backslash followed by a LaTeX style short name, such as \alpha. Press tab, and it will turn into α.

Widget migration guide

The widget framework has a lot of backwards incompatible changes. For information about migrating widget notebooks and custom widgets to 3.0 refer to the :doc:`widget migration guide<version3_widget_migration>`.

Other new features

  • :class:`~.TextWidget` and :class:`~.TextareaWidget` objects now include a placeholder attribute, for displaying placeholder text before the user has typed anything.

  • The :magic:`load` magic can now find the source for objects in the user namespace. To enable searching the namespace, use the -n option.

    In [1]: %load -n my_module.some_function
    
  • :class:`~.DirectView` objects have a new :meth:`~.DirectView.use_cloudpickle` method, which works like view.use_dill(), but causes the cloudpickle module from PiCloud's cloud library to be used rather than dill or the builtin pickle module.

  • Added a .ipynb exporter to nbconvert. It can be used by passing --to notebook as a commandline argument to nbconvert.

  • New nbconvert preprocessor called :class:`~.ClearOutputPreprocessor`. This clears the output from IPython notebooks.

  • New preprocessor for nbconvert that executes all the code cells in a notebook. To run a notebook and save its output in a new notebook:

    ipython nbconvert InputNotebook --ExecutePreprocessor.enabled=True --to notebook --output Executed
    
  • Consecutive stream (stdout/stderr) output is merged into a single output in the notebook document. Previously, all output messages were preserved as separate output fields in the JSON. Now, the same merge is applied to the stored output as the displayed output, improving document load time for notebooks with many small outputs.

  • NotebookApp.webapp_settings is deprecated and replaced with the more informatively named NotebookApp.tornado_settings.

  • Using :magic:`timeit` prints warnings if there is atleast a 4x difference in timings between the slowest and fastest runs, since this might meant that the multiple runs are not independent of one another.

  • It's now possible to provide mechanisms to integrate IPython with other event loops, in addition to the ones we already support. This lets you run GUI code in IPython with an interactive prompt, and to embed the IPython kernel in GUI applications. See :doc:`/config/eventloops` for details. As part of this, the direct enable_* and disable_* functions for various GUIs in :mod:`IPython.lib.inputhook` have been deprecated in favour of :meth:`~.InputHookManager.enable_gui` and :meth:`~.InputHookManager.disable_gui`.

  • A ScrollManager was added to the notebook. The ScrollManager controls how the notebook document is scrolled using keyboard. Users can inherit from the ScrollManager or TargetScrollManager to customize how their notebook scrolls. The default ScrollManager is the SlideScrollManager, which tries to scroll to the nearest slide or sub-slide cell.

  • The function :func:`~IPython.html.widgets.interaction.interact_manual` has been added which behaves similarly to :func:`~IPython.html.widgets.interaction.interact`, but adds a button to explicitly run the interacted-with function, rather than doing it automatically for every change of the parameter widgets. This should be useful for long-running functions.

  • The %cython magic is now part of the Cython module. Use %load_ext Cython with a version of Cython >= 0.21 to have access to the magic now.

  • The Notebook application now offers integrated terminals on Unix platforms, intended for when it is used on a remote server. To enable these, install the terminado Python package.

  • The Notebook application can now edit any plain text files, via a full-page CodeMirror instance.

  • Setting the default highlighting language for nbconvert with the config option NbConvertBase.default_language is deprecated. Nbconvert now respects metadata stored in the :ref:`kernel spec <kernelspecs>`.

  • IPython can now be configured systemwide, with files in :file:`/etc/ipython` or :file:`/usr/local/etc/ipython` on Unix systems, or :file:`{%PROGRAMDATA%}\\ipython` on Windows.

  • Added support for configurable user-supplied Jinja HTML templates for the notebook. Paths to directories containing template files can be specified via NotebookApp.extra_template_paths. User-supplied template directories searched first by the notebook, making it possible to replace existing templates with your own files.

    For example, to replace the notebook's built-in error.html with your own, create a directory like /home/my_templates and put your override template at /home/my_templates/error.html. To start the notebook with your custom error page enabled, you would run:

    ipython notebook '--extra_template_paths=["/home/my_templates/"]'
    

    It's also possible to override a template while also inheriting from that template, by prepending templates/ to the {% extends %} target of your child template. This is useful when you only want to override a specific block of a template. For example, to add additional CSS to the built-in error.html, you might create an override that looks like:

    {% extends "templates/error.html" %}
    
    {% block stylesheet %}
    {{super()}}
    <style type="text/css">
      /* My Awesome CSS */
    </style>
    {% endblock %}
    
  • Added a widget persistence API. This allows you to persist your notebooks interactive widgets. Two levels of control are provided: 1. Higher level- WidgetManager.set_state_callbacks allows you to register callbacks for loading and saving widget state. The callbacks you register are automatically called when necessary. 2. Lower level- the WidgetManager Javascript class now has get_state and set_state methods that allow you to get and set the state of the widget runtime.

    Example code for persisting your widget state to session data:

    %%javascript
    require(['widgets/js/manager'], function(manager) {
        manager.WidgetManager.set_state_callbacks(function() { // Load
            return JSON.parse(sessionStorage.widgets_state || '{}');
        }, function(state) { // Save
            sessionStorage.widgets_state = JSON.stringify(state);
        });
    });
    
  • Enhanced support for :magic:`env` magic. As before, :magic:`env` with no arguments displays all environment variables and values. Additionally, :magic:`env` can be used to get or set individual environment variables. To display an individual value, use the %env var syntax. To set a value, use env var val or env var=val. Python value expansion using $ works as usual.

Backwards incompatible changes

  • The :ref:`message protocol <messaging>` has been updated from version 4 to version 5. Adapters are included, so IPython frontends can still talk to kernels that implement protocol version 4.

  • The :ref:`notebook format <nbformat>` has been updated from version 3 to version 4. Read-only support for v4 notebooks has been backported to IPython 2.4. Notable changes:

    • heading cells are removed in favor or markdown headings
    • notebook outputs and output messages are more consistent with each other
    • use :func:`IPython.nbformat.read` and :func:`~IPython.nbformat.write` to read and write notebook files instead of the deprecated :mod:`IPython.nbformat.current` APIs.

    You can downgrade a notebook to v3 via nbconvert:

    ipython nbconvert --to notebook --nbformat 3 <notebook>
    

    which will create :file:`notebook.v3.ipynb`, a copy of the notebook in v3 format.

  • :func:`IPython.core.oinspect.getsource` call specification has changed:

    • oname keyword argument has been added for property source formatting
    • is_binary keyword argument has been dropped, passing True had previously short-circuited the function to return None unconditionally
  • Removed the octavemagic extension: it is now available as oct2py.ipython.

  • Creating PDFs with LaTeX no longer uses a post processor. Use nbconvert --to pdf instead of nbconvert --to latex --post pdf.

  • Used https://github.com/jdfreder/bootstrap2to3 to migrate the Notebook to Bootstrap 3.

    Additional changes:

    • Set .tab-content .row 0px; left and right margin (bootstrap default is -15px;)
    • Removed height: @btn_mini_height; from .list_header>div, .list_item>div in tree.less
    • Set #header div margin-bottom: 0px;
    • Set #menus to float: left;
    • Set #maintoolbar .navbar-text to float: none;
    • Added no-padding convenience class.
    • Set border of #maintoolbar to 0px
  • Accessing the container DOM object when displaying javascript has been deprecated in IPython 2.0 in favor of accessing element. Starting with IPython 3.0 trying to access container will raise an error in browser javascript console.

  • IPython.utils.py3compat.open was removed: :func:`io.open` provides all the same functionality.

  • The NotebookManager and /api/notebooks service has been replaced by a more generic ContentsManager and /api/contents service, which supports all kinds of files.

  • The Dashboard now lists all files, not just notebooks and directories.

  • The --script hook for saving notebooks to Python scripts is removed, use :samp:`ipython nbconvert --to python {notebook}` instead.

  • The rmagic extension is deprecated, as it is now part of rpy2. See :mod:`rpy2.ipython.rmagic`.

  • :meth:`~.KernelManager.start_kernel` and :meth:`~.KernelManager.format_kernel_cmd` no longer accept a executable parameter. Use the kernelspec machinery instead.

  • The widget classes have been renamed from *Widget to *. The old names are still functional, but are deprecated. i.e. IntSliderWidget has been renamed to IntSlider.

  • The ContainerWidget was renamed to Box and no longer defaults as a flexible box in the web browser. A new FlexBox widget was added, which allows you to use the flexible box model.

  • The notebook now uses a single websocket at /kernels/<kernel-id>/channels instead of separate /kernels/<kernel-id>/{shell|iopub|stdin} channels. Messages on each channel are identified by a channel key in the message dict, for both send and recv.

Content Security Policy

The Content Security Policy is a web standard for adding a layer of security to detect and mitigate certain classes of attacks, including Cross Site Scripting (XSS) and data injection attacks. This was introduced into the notebook to ensure that the IPython Notebook and its APIs (by default) can only be embedded in an iframe on the same origin.

Override headers['Content-Security-Policy'] within your notebook configuration to extend for alternate domains and security settings.:

c.NotebookApp.tornado_settings = {
    'headers': {
        'Content-Security-Policy': "frame-ancestors 'self'"
    }
}

Example policies:

Content-Security-Policy: default-src 'self' https://*.jupyter.org

Matches embeddings on any subdomain of jupyter.org, so long as they are served over SSL.

There is a report-uri endpoint available for logging CSP violations, located at /api/security/csp-report. To use it, set report-uri as part of the CSP:

c.NotebookApp.tornado_settings = {
    'headers': {
        'Content-Security-Policy': "frame-ancestors 'self'; report-uri /api/security/csp-report"
    }
}

It simply provides the CSP report as a warning in IPython's logs. The default CSP sets this report-uri relative to the base_url (not shown above).

For a more thorough and accurate guide on Content Security Policies, check out MDN's Using Content Security Policy for more examples.