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add initialize() to BaseIPythonApplication...
add initialize() to BaseIPythonApplication initialize loads config, and ensures command-line opts override those specified in config files.

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index.txt
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.. _parallel_index:
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Using IPython for parallel computing
====================================
.. toctree::
:maxdepth: 2
parallel_intro.txt
parallel_process.txt
parallel_multiengine.txt
parallel_task.txt
parallel_mpi.txt
parallel_db.txt
parallel_security.txt
parallel_winhpc.txt
parallel_demos.txt
dag_dependencies.txt
parallel_details.txt
parallel_transition.txt