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Don't rely upon traitlets copying self.config...
Don't rely upon traitlets copying self.config when saving CLI config to reload later for highest priority. traitlets 4.1-4.2.1 don't copy self.config in update_config (rightly so), so when saving CLI config for later re-loading, make sure it's a copy so it doesn't get changed by further loading.

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__init__.py
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