"""Nose Plugin that supports IPython doctests. Limitations: - When generating examples for use as doctests, make sure that you have pretty-printing OFF. This can be done either by starting ipython with the flag '--nopprint', by setting pprint to 0 in your ipythonrc file, or by interactively disabling it with %Pprint. This is required so that IPython output matches that of normal Python, which is used by doctest for internal execution. - Do not rely on specific prompt numbers for results (such as using '_34==True', for example). For IPython tests run via an external process the prompt numbers may be different, and IPython tests run as normal python code won't even have these special _NN variables set at all. """ #----------------------------------------------------------------------------- # Module imports # From the standard library import __builtin__ import commands import doctest import inspect import logging import os import re import sys import traceback import unittest from inspect import getmodule from StringIO import StringIO # We are overriding the default doctest runner, so we need to import a few # things from doctest directly from doctest import (REPORTING_FLAGS, REPORT_ONLY_FIRST_FAILURE, _unittest_reportflags, DocTestRunner, _extract_future_flags, pdb, _OutputRedirectingPdb, _exception_traceback, linecache) # Third-party modules import nose.core from nose.plugins import doctests, Plugin from nose.util import anyp, getpackage, test_address, resolve_name, tolist #----------------------------------------------------------------------------- # Module globals and other constants #----------------------------------------------------------------------------- log = logging.getLogger(__name__) #----------------------------------------------------------------------------- # Classes and functions #----------------------------------------------------------------------------- def is_extension_module(filename): """Return whether the given filename is an extension module. This simply checks that the extension is either .so or .pyd. """ return os.path.splitext(filename)[1].lower() in ('.so','.pyd') class DocTestSkip(object): """Object wrapper for doctests to be skipped.""" ds_skip = """Doctest to skip. >>> 1 #doctest: +SKIP """ def __init__(self,obj): self.obj = obj def __getattribute__(self,key): if key == '__doc__': return DocTestSkip.ds_skip else: return getattr(object.__getattribute__(self,'obj'),key) # Modified version of the one in the stdlib, that fixes a python bug (doctests # not found in extension modules, http://bugs.python.org/issue3158) class DocTestFinder(doctest.DocTestFinder): def _from_module(self, module, object): """ Return true if the given object is defined in the given module. """ if module is None: return True elif inspect.isfunction(object): return module.__dict__ is object.func_globals elif inspect.isbuiltin(object): return module.__name__ == object.__module__ elif inspect.isclass(object): return module.__name__ == object.__module__ elif inspect.ismethod(object): # This one may be a bug in cython that fails to correctly set the # __module__ attribute of methods, but since the same error is easy # to make by extension code writers, having this safety in place # isn't such a bad idea return module.__name__ == object.im_class.__module__ elif inspect.getmodule(object) is not None: return module is inspect.getmodule(object) elif hasattr(object, '__module__'): return module.__name__ == object.__module__ elif isinstance(object, property): return True # [XX] no way not be sure. else: raise ValueError("object must be a class or function") def _find(self, tests, obj, name, module, source_lines, globs, seen): """ Find tests for the given object and any contained objects, and add them to `tests`. """ #print '_find for:', obj, name, module # dbg if hasattr(obj,"skip_doctest"): #print 'SKIPPING DOCTEST FOR:',obj # dbg obj = DocTestSkip(obj) doctest.DocTestFinder._find(self,tests, obj, name, module, source_lines, globs, seen) # Below we re-run pieces of the above method with manual modifications, # because the original code is buggy and fails to correctly identify # doctests in extension modules. # Local shorthands from inspect import isroutine, isclass, ismodule # Look for tests in a module's contained objects. if inspect.ismodule(obj) and self._recurse: for valname, val in obj.__dict__.items(): valname1 = '%s.%s' % (name, valname) if ( (isroutine(val) or isclass(val)) and self._from_module(module, val) ): self._find(tests, val, valname1, module, source_lines, globs, seen) # Look for tests in a class's contained objects. if inspect.isclass(obj) and self._recurse: #print 'RECURSE into class:',obj # dbg for valname, val in obj.__dict__.items(): # Special handling for staticmethod/classmethod. if isinstance(val, staticmethod): val = getattr(obj, valname) if isinstance(val, classmethod): val = getattr(obj, valname).im_func # Recurse to methods, properties, and nested classes. if ((inspect.isfunction(val) or inspect.isclass(val) or inspect.ismethod(val) or isinstance(val, property)) and self._from_module(module, val)): valname = '%s.%s' % (name, valname) self._find(tests, val, valname, module, source_lines, globs, seen) class IPDoctestOutputChecker(doctest.OutputChecker): """Second-chance checker with support for random tests. If the default comparison doesn't pass, this checker looks in the expected output string for flags that tell us to ignore the output. """ random_re = re.compile(r'#\s*random\s+') def check_output(self, want, got, optionflags): """Check output, accepting special markers embedded in the output. If the output didn't pass the default validation but the special string '#random' is included, we accept it.""" # Let the original tester verify first, in case people have valid tests # that happen to have a comment saying '#random' embedded in. ret = doctest.OutputChecker.check_output(self, want, got, optionflags) if not ret and self.random_re.search(want): #print >> sys.stderr, 'RANDOM OK:',want # dbg return True return ret class DocTestCase(doctests.DocTestCase): """Proxy for DocTestCase: provides an address() method that returns the correct address for the doctest case. Otherwise acts as a proxy to the test case. To provide hints for address(), an obj may also be passed -- this will be used as the test object for purposes of determining the test address, if it is provided. """ # Note: this method was taken from numpy's nosetester module. # Subclass nose.plugins.doctests.DocTestCase to work around a bug in # its constructor that blocks non-default arguments from being passed # down into doctest.DocTestCase def __init__(self, test, optionflags=0, setUp=None, tearDown=None, checker=None, obj=None, result_var='_'): self._result_var = result_var doctests.DocTestCase.__init__(self, test, optionflags=optionflags, setUp=setUp, tearDown=tearDown, checker=checker) # Now we must actually copy the original constructor from the stdlib # doctest class, because we can't call it directly and a bug in nose # means it never gets passed the right arguments. self._dt_optionflags = optionflags self._dt_checker = checker self._dt_test = test self._dt_setUp = setUp self._dt_tearDown = tearDown # XXX - store this runner once in the object! runner = IPDocTestRunner(optionflags=optionflags, checker=checker, verbose=False) self._dt_runner = runner # Each doctest should remember the directory it was loaded from, so # things like %run work without too many contortions self._ori_dir = os.path.dirname(test.filename) # Modified runTest from the default stdlib def runTest(self): test = self._dt_test runner = self._dt_runner old = sys.stdout new = StringIO() optionflags = self._dt_optionflags if not (optionflags & REPORTING_FLAGS): # The option flags don't include any reporting flags, # so add the default reporting flags optionflags |= _unittest_reportflags try: # Save our current directory and switch out to the one where the # test was originally created, in case another doctest did a # directory change. We'll restore this in the finally clause. curdir = os.getcwd() #print 'runTest in dir:', self._ori_dir # dbg os.chdir(self._ori_dir) runner.DIVIDER = "-"*70 failures, tries = runner.run(test,out=new.write, clear_globs=False) finally: sys.stdout = old os.chdir(curdir) if failures: raise self.failureException(self.format_failure(new.getvalue())) def setUp(self): """Modified test setup that syncs with ipython namespace""" #print "setUp test", self._dt_test.examples # dbg if isinstance(self._dt_test.examples[0],IPExample): # for IPython examples *only*, we swap the globals with the ipython # namespace, after updating it with the globals (which doctest # fills with the necessary info from the module being tested). _ip.user_ns.update(self._dt_test.globs) self._dt_test.globs = _ip.user_ns super(DocTestCase, self).setUp() def tearDown(self): # XXX - fperez: I am not sure if this is truly a bug in nose 0.11, but # it does look like one to me: its tearDown method tries to run # # delattr(__builtin__, self._result_var) # # without checking that the attribute really is there; it implicitly # assumes it should have been set via displayhook. But if the # displayhook was never called, this doesn't necessarily happen. I # haven't been able to find a little self-contained example outside of # ipython that would show the problem so I can report it to the nose # team, but it does happen a lot in our code. # # So here, we just protect as narrowly as possible by trapping an # attribute error whose message would be the name of self._result_var, # and letting any other error propagate. try: super(DocTestCase, self).tearDown() except AttributeError, exc: if exc.args[0] != self._result_var: raise # A simple subclassing of the original with a different class name, so we can # distinguish and treat differently IPython examples from pure python ones. class IPExample(doctest.Example): pass class IPExternalExample(doctest.Example): """Doctest examples to be run in an external process.""" def __init__(self, source, want, exc_msg=None, lineno=0, indent=0, options=None): # Parent constructor doctest.Example.__init__(self,source,want,exc_msg,lineno,indent,options) # An EXTRA newline is needed to prevent pexpect hangs self.source += '\n' class IPDocTestParser(doctest.DocTestParser): """ A class used to parse strings containing doctest examples. Note: This is a version modified to properly recognize IPython input and convert any IPython examples into valid Python ones. """ # This regular expression is used to find doctest examples in a # string. It defines three groups: `source` is the source code # (including leading indentation and prompts); `indent` is the # indentation of the first (PS1) line of the source code; and # `want` is the expected output (including leading indentation). # Classic Python prompts or default IPython ones _PS1_PY = r'>>>' _PS2_PY = r'\.\.\.' _PS1_IP = r'In\ \[\d+\]:' _PS2_IP = r'\ \ \ \.\.\.+:' _RE_TPL = r''' # Source consists of a PS1 line followed by zero or more PS2 lines. (?P (?:^(?P [ ]*) (?P %s) .*) # PS1 line (?:\n [ ]* (?P %s) .*)*) # PS2 lines \n? # a newline # Want consists of any non-blank lines that do not start with PS1. (?P (?:(?![ ]*$) # Not a blank line (?![ ]*%s) # Not a line starting with PS1 (?![ ]*%s) # Not a line starting with PS2 .*$\n? # But any other line )*) ''' _EXAMPLE_RE_PY = re.compile( _RE_TPL % (_PS1_PY,_PS2_PY,_PS1_PY,_PS2_PY), re.MULTILINE | re.VERBOSE) _EXAMPLE_RE_IP = re.compile( _RE_TPL % (_PS1_IP,_PS2_IP,_PS1_IP,_PS2_IP), re.MULTILINE | re.VERBOSE) # Mark a test as being fully random. In this case, we simply append the # random marker ('#random') to each individual example's output. This way # we don't need to modify any other code. _RANDOM_TEST = re.compile(r'#\s*all-random\s+') # Mark tests to be executed in an external process - currently unsupported. _EXTERNAL_IP = re.compile(r'#\s*ipdoctest:\s*EXTERNAL') def ip2py(self,source): """Convert input IPython source into valid Python.""" out = [] newline = out.append #print 'IPSRC:\n',source,'\n###' # dbg # The input source must be first stripped of all bracketing whitespace # and turned into lines, so it looks to the parser like regular user # input for lnum,line in enumerate(source.strip().splitlines()): newline(_ip.prefilter(line,lnum>0)) newline('') # ensure a closing newline, needed by doctest #print "PYSRC:", '\n'.join(out) # dbg return '\n'.join(out) def parse(self, string, name=''): """ Divide the given string into examples and intervening text, and return them as a list of alternating Examples and strings. Line numbers for the Examples are 0-based. The optional argument `name` is a name identifying this string, and is only used for error messages. """ #print 'Parse string:\n',string # dbg string = string.expandtabs() # If all lines begin with the same indentation, then strip it. min_indent = self._min_indent(string) if min_indent > 0: string = '\n'.join([l[min_indent:] for l in string.split('\n')]) output = [] charno, lineno = 0, 0 # We make 'all random' tests by adding the '# random' mark to every # block of output in the test. if self._RANDOM_TEST.search(string): random_marker = '\n# random' else: random_marker = '' # Whether to convert the input from ipython to python syntax ip2py = False # Find all doctest examples in the string. First, try them as Python # examples, then as IPython ones terms = list(self._EXAMPLE_RE_PY.finditer(string)) if terms: # Normal Python example #print '-'*70 # dbg #print 'PyExample, Source:\n',string # dbg #print '-'*70 # dbg Example = doctest.Example else: # It's an ipython example. Note that IPExamples are run # in-process, so their syntax must be turned into valid python. # IPExternalExamples are run out-of-process (via pexpect) so they # don't need any filtering (a real ipython will be executing them). terms = list(self._EXAMPLE_RE_IP.finditer(string)) if self._EXTERNAL_IP.search(string): #print '-'*70 # dbg #print 'IPExternalExample, Source:\n',string # dbg #print '-'*70 # dbg Example = IPExternalExample else: #print '-'*70 # dbg #print 'IPExample, Source:\n',string # dbg #print '-'*70 # dbg Example = IPExample ip2py = True for m in terms: # Add the pre-example text to `output`. output.append(string[charno:m.start()]) # Update lineno (lines before this example) lineno += string.count('\n', charno, m.start()) # Extract info from the regexp match. (source, options, want, exc_msg) = \ self._parse_example(m, name, lineno,ip2py) # Append the random-output marker (it defaults to empty in most # cases, it's only non-empty for 'all-random' tests): want += random_marker if Example is IPExternalExample: options[doctest.NORMALIZE_WHITESPACE] = True want += '\n' # Create an Example, and add it to the list. if not self._IS_BLANK_OR_COMMENT(source): output.append(Example(source, want, exc_msg, lineno=lineno, indent=min_indent+len(m.group('indent')), options=options)) # Update lineno (lines inside this example) lineno += string.count('\n', m.start(), m.end()) # Update charno. charno = m.end() # Add any remaining post-example text to `output`. output.append(string[charno:]) return output def _parse_example(self, m, name, lineno,ip2py=False): """ Given a regular expression match from `_EXAMPLE_RE` (`m`), return a pair `(source, want)`, where `source` is the matched example's source code (with prompts and indentation stripped); and `want` is the example's expected output (with indentation stripped). `name` is the string's name, and `lineno` is the line number where the example starts; both are used for error messages. Optional: `ip2py`: if true, filter the input via IPython to convert the syntax into valid python. """ # Get the example's indentation level. indent = len(m.group('indent')) # Divide source into lines; check that they're properly # indented; and then strip their indentation & prompts. source_lines = m.group('source').split('\n') # We're using variable-length input prompts ps1 = m.group('ps1') ps2 = m.group('ps2') ps1_len = len(ps1) self._check_prompt_blank(source_lines, indent, name, lineno,ps1_len) if ps2: self._check_prefix(source_lines[1:], ' '*indent + ps2, name, lineno) source = '\n'.join([sl[indent+ps1_len+1:] for sl in source_lines]) if ip2py: # Convert source input from IPython into valid Python syntax source = self.ip2py(source) # Divide want into lines; check that it's properly indented; and # then strip the indentation. Spaces before the last newline should # be preserved, so plain rstrip() isn't good enough. want = m.group('want') want_lines = want.split('\n') if len(want_lines) > 1 and re.match(r' *$', want_lines[-1]): del want_lines[-1] # forget final newline & spaces after it self._check_prefix(want_lines, ' '*indent, name, lineno + len(source_lines)) # Remove ipython output prompt that might be present in the first line want_lines[0] = re.sub(r'Out\[\d+\]: \s*?\n?','',want_lines[0]) want = '\n'.join([wl[indent:] for wl in want_lines]) # If `want` contains a traceback message, then extract it. m = self._EXCEPTION_RE.match(want) if m: exc_msg = m.group('msg') else: exc_msg = None # Extract options from the source. options = self._find_options(source, name, lineno) return source, options, want, exc_msg def _check_prompt_blank(self, lines, indent, name, lineno, ps1_len): """ Given the lines of a source string (including prompts and leading indentation), check to make sure that every prompt is followed by a space character. If any line is not followed by a space character, then raise ValueError. Note: IPython-modified version which takes the input prompt length as a parameter, so that prompts of variable length can be dealt with. """ space_idx = indent+ps1_len min_len = space_idx+1 for i, line in enumerate(lines): if len(line) >= min_len and line[space_idx] != ' ': raise ValueError('line %r of the docstring for %s ' 'lacks blank after %s: %r' % (lineno+i+1, name, line[indent:space_idx], line)) SKIP = doctest.register_optionflag('SKIP') class IPDocTestRunner(doctest.DocTestRunner,object): """Test runner that synchronizes the IPython namespace with test globals. """ def run(self, test, compileflags=None, out=None, clear_globs=True): # Hack: ipython needs access to the execution context of the example, # so that it can propagate user variables loaded by %run into # test.globs. We put them here into our modified %run as a function # attribute. Our new %run will then only make the namespace update # when called (rather than unconconditionally updating test.globs here # for all examples, most of which won't be calling %run anyway). #_ip._ipdoctest_test_globs = test.globs #_ip._ipdoctest_test_filename = test.filename test.globs.update(_ip.user_ns) return super(IPDocTestRunner,self).run(test, compileflags,out,clear_globs) class DocFileCase(doctest.DocFileCase): """Overrides to provide filename """ def address(self): return (self._dt_test.filename, None, None) class ExtensionDoctest(doctests.Doctest): """Nose Plugin that supports doctests in extension modules. """ name = 'extdoctest' # call nosetests with --with-extdoctest enabled = True def __init__(self,exclude_patterns=None): """Create a new ExtensionDoctest plugin. Parameters ---------- exclude_patterns : sequence of strings, optional These patterns are compiled as regular expressions, subsequently used to exclude any filename which matches them from inclusion in the test suite (using pattern.search(), NOT pattern.match() ). """ if exclude_patterns is None: exclude_patterns = [] self.exclude_patterns = map(re.compile,exclude_patterns) doctests.Doctest.__init__(self) def options(self, parser, env=os.environ): Plugin.options(self, parser, env) parser.add_option('--doctest-tests', action='store_true', dest='doctest_tests', default=env.get('NOSE_DOCTEST_TESTS',True), help="Also look for doctests in test modules. " "Note that classes, methods and functions should " "have either doctests or non-doctest tests, " "not both. [NOSE_DOCTEST_TESTS]") parser.add_option('--doctest-extension', action="append", dest="doctestExtension", help="Also look for doctests in files with " "this extension [NOSE_DOCTEST_EXTENSION]") # Set the default as a list, if given in env; otherwise # an additional value set on the command line will cause # an error. env_setting = env.get('NOSE_DOCTEST_EXTENSION') if env_setting is not None: parser.set_defaults(doctestExtension=tolist(env_setting)) def configure(self, options, config): Plugin.configure(self, options, config) self.doctest_tests = options.doctest_tests self.extension = tolist(options.doctestExtension) self.parser = doctest.DocTestParser() self.finder = DocTestFinder() self.checker = IPDoctestOutputChecker() self.globs = None self.extraglobs = None def loadTestsFromExtensionModule(self,filename): bpath,mod = os.path.split(filename) modname = os.path.splitext(mod)[0] try: sys.path.append(bpath) module = __import__(modname) tests = list(self.loadTestsFromModule(module)) finally: sys.path.pop() return tests # NOTE: the method below is almost a copy of the original one in nose, with # a few modifications to control output checking. def loadTestsFromModule(self, module): #print '*** ipdoctest - lTM',module # dbg if not self.matches(module.__name__): log.debug("Doctest doesn't want module %s", module) return tests = self.finder.find(module,globs=self.globs, extraglobs=self.extraglobs) if not tests: return # always use whitespace and ellipsis options optionflags = doctest.NORMALIZE_WHITESPACE | doctest.ELLIPSIS tests.sort() module_file = module.__file__ if module_file[-4:] in ('.pyc', '.pyo'): module_file = module_file[:-1] for test in tests: if not test.examples: continue if not test.filename: test.filename = module_file yield DocTestCase(test, optionflags=optionflags, checker=self.checker) def loadTestsFromFile(self, filename): #print "ipdoctest - from file", filename # dbg if is_extension_module(filename): for t in self.loadTestsFromExtensionModule(filename): yield t else: if self.extension and anyp(filename.endswith, self.extension): name = os.path.basename(filename) dh = open(filename) try: doc = dh.read() finally: dh.close() test = self.parser.get_doctest( doc, globs={'__file__': filename}, name=name, filename=filename, lineno=0) if test.examples: #print 'FileCase:',test.examples # dbg yield DocFileCase(test) else: yield False # no tests to load def wantFile(self,filename): """Return whether the given filename should be scanned for tests. Modified version that accepts extension modules as valid containers for doctests. """ #print '*** ipdoctest- wantFile:',filename # dbg for pat in self.exclude_patterns: if pat.search(filename): # print '###>>> SKIP:',filename # dbg return False if is_extension_module(filename): return True else: return doctests.Doctest.wantFile(self,filename) class IPythonDoctest(ExtensionDoctest): """Nose Plugin that supports doctests in extension modules. """ name = 'ipdoctest' # call nosetests with --with-ipdoctest enabled = True def makeTest(self, obj, parent): """Look for doctests in the given object, which will be a function, method or class. """ #print 'Plugin analyzing:', obj, parent # dbg # always use whitespace and ellipsis options optionflags = doctest.NORMALIZE_WHITESPACE | doctest.ELLIPSIS doctests = self.finder.find(obj, module=getmodule(parent)) if doctests: for test in doctests: if len(test.examples) == 0: continue yield DocTestCase(test, obj=obj, optionflags=optionflags, checker=self.checker) def options(self, parser, env=os.environ): #print "Options for nose plugin:", self.name # dbg Plugin.options(self, parser, env) parser.add_option('--ipdoctest-tests', action='store_true', dest='ipdoctest_tests', default=env.get('NOSE_IPDOCTEST_TESTS',True), help="Also look for doctests in test modules. " "Note that classes, methods and functions should " "have either doctests or non-doctest tests, " "not both. [NOSE_IPDOCTEST_TESTS]") parser.add_option('--ipdoctest-extension', action="append", dest="ipdoctest_extension", help="Also look for doctests in files with " "this extension [NOSE_IPDOCTEST_EXTENSION]") # Set the default as a list, if given in env; otherwise # an additional value set on the command line will cause # an error. env_setting = env.get('NOSE_IPDOCTEST_EXTENSION') if env_setting is not None: parser.set_defaults(ipdoctest_extension=tolist(env_setting)) def configure(self, options, config): #print "Configuring nose plugin:", self.name # dbg Plugin.configure(self, options, config) self.doctest_tests = options.ipdoctest_tests self.extension = tolist(options.ipdoctest_extension) self.parser = IPDocTestParser() self.finder = DocTestFinder(parser=self.parser) self.checker = IPDoctestOutputChecker() self.globs = None self.extraglobs = None