# -*- coding: utf-8 -*- """Sphinx directive to support embedded IPython code. This directive allows pasting of entire interactive IPython sessions, prompts and all, and their code will actually get re-executed at doc build time, with all prompts renumbered sequentially. It also allows you to input code as a pure python input by giving the argument python to the directive. The output looks like an interactive ipython section. To enable this directive, simply list it in your Sphinx ``conf.py`` file (making sure the directory where you placed it is visible to sphinx, as is needed for all Sphinx directives). By default this directive assumes that your prompts are unchanged IPython ones, but this can be customized. The configurable options that can be placed in conf.py are ipython_savefig_dir: The directory in which to save the figures. This is relative to the Sphinx source directory. The default is `html_static_path`. ipython_rgxin: The compiled regular expression to denote the start of IPython input lines. The default is re.compile('In \[(\d+)\]:\s?(.*)\s*'). You shouldn't need to change this. ipython_rgxout: The compiled regular expression to denote the start of IPython output lines. The default is re.compile('Out\[(\d+)\]:\s?(.*)\s*'). You shouldn't need to change this. ipython_promptin: The string to represent the IPython input prompt in the generated ReST. The default is 'In [%d]:'. This expects that the line numbers are used in the prompt. ipython_promptout: The string to represent the IPython prompt in the generated ReST. The default is 'Out [%d]:'. This expects that the line numbers are used in the prompt. ToDo ---- - Turn the ad-hoc test() function into a real test suite. - Break up ipython-specific functionality from matplotlib stuff into better separated code. Authors ------- - John D Hunter: orignal author. - Fernando Perez: refactoring, documentation, cleanups, port to 0.11. - VáclavŠmilauer : Prompt generalizations. - Skipper Seabold, refactoring, cleanups, pure python addition """ from __future__ import print_function #----------------------------------------------------------------------------- # Imports #----------------------------------------------------------------------------- # Stdlib import cStringIO import os import re import sys import tempfile import ast # To keep compatibility with various python versions try: from hashlib import md5 except ImportError: from md5 import md5 # Third-party import matplotlib import sphinx from docutils.parsers.rst import directives from docutils import nodes from sphinx.util.compat import Directive matplotlib.use('Agg') # Our own from IPython import Config, InteractiveShell from IPython.core.profiledir import ProfileDir from IPython.utils import io #----------------------------------------------------------------------------- # Globals #----------------------------------------------------------------------------- # for tokenizing blocks COMMENT, INPUT, OUTPUT = range(3) #----------------------------------------------------------------------------- # Functions and class declarations #----------------------------------------------------------------------------- def block_parser(part, rgxin, rgxout, fmtin, fmtout): """ part is a string of ipython text, comprised of at most one input, one ouput, comments, and blank lines. The block parser parses the text into a list of:: blocks = [ (TOKEN0, data0), (TOKEN1, data1), ...] where TOKEN is one of [COMMENT | INPUT | OUTPUT ] and data is, depending on the type of token:: COMMENT : the comment string INPUT: the (DECORATOR, INPUT_LINE, REST) where DECORATOR: the input decorator (or None) INPUT_LINE: the input as string (possibly multi-line) REST : any stdout generated by the input line (not OUTPUT) OUTPUT: the output string, possibly multi-line """ block = [] lines = part.split('\n') N = len(lines) i = 0 decorator = None while 1: if i==N: # nothing left to parse -- the last line break line = lines[i] i += 1 line_stripped = line.strip() if line_stripped.startswith('#'): block.append((COMMENT, line)) continue if line_stripped.startswith('@'): # we're assuming at most one decorator -- may need to # rethink decorator = line_stripped continue # does this look like an input line? matchin = rgxin.match(line) if matchin: lineno, inputline = int(matchin.group(1)), matchin.group(2) # the ....: continuation string continuation = ' %s:'%''.join(['.']*(len(str(lineno))+2)) Nc = len(continuation) # input lines can continue on for more than one line, if # we have a '\' line continuation char or a function call # echo line 'print'. The input line can only be # terminated by the end of the block or an output line, so # we parse out the rest of the input line if it is # multiline as well as any echo text rest = [] while i 1: if input_lines[-1] != "": input_lines.append('') # make sure there's a blank line # so splitter buffer gets reset continuation = ' %s:'%''.join(['.']*(len(str(lineno))+2)) Nc = len(continuation) if is_savefig: image_file, image_directive = self.process_image(decorator) ret = [] is_semicolon = False for i, line in enumerate(input_lines): if line.endswith(';'): is_semicolon = True if i==0: # process the first input line if is_verbatim: self.process_input_line('') self.IP.execution_count += 1 # increment it anyway else: # only submit the line in non-verbatim mode self.process_input_line(line, store_history=True) formatted_line = '%s %s'%(input_prompt, line) else: # process a continuation line if not is_verbatim: self.process_input_line(line, store_history=True) formatted_line = '%s %s'%(continuation, line) if not is_suppress: ret.append(formatted_line) if not is_suppress and len(rest.strip()) and is_verbatim: # the "rest" is the standard output of the # input, which needs to be added in # verbatim mode ret.append(rest) self.cout.seek(0) output = self.cout.read() if not is_suppress and not is_semicolon: ret.append(output) elif is_semicolon: # get spacing right ret.append('') self.cout.truncate(0) return (ret, input_lines, output, is_doctest, image_file, image_directive) #print 'OUTPUT', output # dbg def process_output(self, data, output_prompt, input_lines, output, is_doctest, image_file): """Process data block for OUTPUT token.""" if is_doctest: submitted = data.strip() found = output if found is not None: found = found.strip() # XXX - fperez: in 0.11, 'output' never comes with the prompt # in it, just the actual output text. So I think all this code # can be nuked... # the above comment does not appear to be accurate... (minrk) ind = found.find(output_prompt) if ind<0: e='output prompt="%s" does not match out line=%s' % \ (output_prompt, found) raise RuntimeError(e) found = found[len(output_prompt):].strip() if found!=submitted: e = ('doctest failure for input_lines="%s" with ' 'found_output="%s" and submitted output="%s"' % (input_lines, found, submitted) ) raise RuntimeError(e) #print 'doctest PASSED for input_lines="%s" with found_output="%s" and submitted output="%s"'%(input_lines, found, submitted) def process_comment(self, data): """Process data fPblock for COMMENT token.""" if not self.is_suppress: return [data] def save_image(self, image_file): """ Saves the image file to disk. """ self.ensure_pyplot() command = 'plt.gcf().savefig("%s")'%image_file #print 'SAVEFIG', command # dbg self.process_input_line('bookmark ipy_thisdir', store_history=False) self.process_input_line('cd -b ipy_savedir', store_history=False) self.process_input_line(command, store_history=False) self.process_input_line('cd -b ipy_thisdir', store_history=False) self.process_input_line('bookmark -d ipy_thisdir', store_history=False) self.clear_cout() def process_block(self, block): """ process block from the block_parser and return a list of processed lines """ ret = [] output = None input_lines = None lineno = self.IP.execution_count input_prompt = self.promptin%lineno output_prompt = self.promptout%lineno image_file = None image_directive = None for token, data in block: if token==COMMENT: out_data = self.process_comment(data) elif token==INPUT: (out_data, input_lines, output, is_doctest, image_file, image_directive) = \ self.process_input(data, input_prompt, lineno) elif token==OUTPUT: out_data = \ self.process_output(data, output_prompt, input_lines, output, is_doctest, image_file) if out_data: ret.extend(out_data) # save the image files if image_file is not None: self.save_image(image_file) return ret, image_directive def ensure_pyplot(self): if self._pyplot_imported: return self.process_input_line('import matplotlib.pyplot as plt', store_history=False) def process_pure_python(self, content): """ content is a list of strings. it is unedited directive conent This runs it line by line in the InteractiveShell, prepends prompts as needed capturing stderr and stdout, then returns the content as a list as if it were ipython code """ output = [] savefig = False # keep up with this to clear figure multiline = False # to handle line continuation multiline_start = None fmtin = self.promptin ct = 0 for lineno, line in enumerate(content): line_stripped = line.strip() if not len(line): output.append(line) continue # handle decorators if line_stripped.startswith('@'): output.extend([line]) if 'savefig' in line: savefig = True # and need to clear figure continue # handle comments if line_stripped.startswith('#'): output.extend([line]) continue # deal with lines checking for multiline continuation = u' %s:'% ''.join(['.']*(len(str(ct))+2)) if not multiline: modified = u"%s %s" % (fmtin % ct, line_stripped) output.append(modified) ct += 1 try: ast.parse(line_stripped) output.append(u'') except Exception: # on a multiline multiline = True multiline_start = lineno else: # still on a multiline modified = u'%s %s' % (continuation, line) output.append(modified) # if the next line is indented, it should be part of multiline if len(content) > lineno + 1: nextline = content[lineno + 1] if len(nextline) - len(nextline.lstrip()) > 3: continue try: mod = ast.parse( '\n'.join(content[multiline_start:lineno+1])) if isinstance(mod.body[0], ast.FunctionDef): # check to see if we have the whole function for element in mod.body[0].body: if isinstance(element, ast.Return): multiline = False else: output.append(u'') multiline = False except Exception: pass if savefig: # clear figure if plotted self.ensure_pyplot() self.process_input_line('plt.clf()', store_history=False) self.clear_cout() savefig = False return output class IPythonDirective(Directive): has_content = True required_arguments = 0 optional_arguments = 4 # python, suppress, verbatim, doctest final_argumuent_whitespace = True option_spec = { 'python': directives.unchanged, 'suppress' : directives.flag, 'verbatim' : directives.flag, 'doctest' : directives.flag, } shell = None seen_docs = set() def get_config_options(self): # contains sphinx configuration variables config = self.state.document.settings.env.config # get config variables to set figure output directory confdir = self.state.document.settings.env.app.confdir savefig_dir = config.ipython_savefig_dir source_dir = os.path.dirname(self.state.document.current_source) if savefig_dir is None: savefig_dir = config.html_static_path if isinstance(savefig_dir, list): savefig_dir = savefig_dir[0] # safe to assume only one path? savefig_dir = os.path.join(confdir, savefig_dir) # get regex and prompt stuff rgxin = config.ipython_rgxin rgxout = config.ipython_rgxout promptin = config.ipython_promptin promptout = config.ipython_promptout return savefig_dir, source_dir, rgxin, rgxout, promptin, promptout def setup(self): if self.shell is None: self.shell = EmbeddedSphinxShell() # reset the execution count if we haven't processed this doc #NOTE: this may be borked if there are multiple seen_doc tmp files #check time stamp? if not self.state.document.current_source in self.seen_docs: self.shell.IP.history_manager.reset() self.shell.IP.execution_count = 1 self.seen_docs.add(self.state.document.current_source) # get config values (savefig_dir, source_dir, rgxin, rgxout, promptin, promptout) = self.get_config_options() # and attach to shell so we don't have to pass them around self.shell.rgxin = rgxin self.shell.rgxout = rgxout self.shell.promptin = promptin self.shell.promptout = promptout self.shell.savefig_dir = savefig_dir self.shell.source_dir = source_dir # setup bookmark for saving figures directory self.shell.process_input_line('bookmark ipy_savedir %s'%savefig_dir, store_history=False) self.shell.clear_cout() return rgxin, rgxout, promptin, promptout def teardown(self): # delete last bookmark self.shell.process_input_line('bookmark -d ipy_savedir', store_history=False) self.shell.clear_cout() def run(self): debug = False #TODO, any reason block_parser can't be a method of embeddable shell # then we wouldn't have to carry these around rgxin, rgxout, promptin, promptout = self.setup() options = self.options self.shell.is_suppress = 'suppress' in options self.shell.is_doctest = 'doctest' in options self.shell.is_verbatim = 'verbatim' in options # handle pure python code if 'python' in self.arguments: content = self.content self.content = self.shell.process_pure_python(content) parts = '\n'.join(self.content).split('\n\n') lines = ['.. code-block:: ipython',''] figures = [] for part in parts: block = block_parser(part, rgxin, rgxout, promptin, promptout) if len(block): rows, figure = self.shell.process_block(block) for row in rows: lines.extend([' %s'%line for line in row.split('\n')]) if figure is not None: figures.append(figure) #text = '\n'.join(lines) #figs = '\n'.join(figures) for figure in figures: lines.append('') lines.extend(figure.split('\n')) lines.append('') #print lines if len(lines)>2: if debug: print('\n'.join(lines)) else: #NOTE: this raises some errors, what's it for? #print 'INSERTING %d lines'%len(lines) self.state_machine.insert_input( lines, self.state_machine.input_lines.source(0)) text = '\n'.join(lines) txtnode = nodes.literal_block(text, text) txtnode['language'] = 'ipython' #imgnode = nodes.image(figs) # cleanup self.teardown() return []#, imgnode] # Enable as a proper Sphinx directive def setup(app): setup.app = app app.add_directive('ipython', IPythonDirective) app.add_config_value('ipython_savefig_dir', None, True) app.add_config_value('ipython_rgxin', re.compile('In \[(\d+)\]:\s?(.*)\s*'), True) app.add_config_value('ipython_rgxout', re.compile('Out\[(\d+)\]:\s?(.*)\s*'), True) app.add_config_value('ipython_promptin', 'In [%d]:', True) app.add_config_value('ipython_promptout', 'Out[%d]:', True) # Simple smoke test, needs to be converted to a proper automatic test. def test(): examples = [ r""" In [9]: pwd Out[9]: '/home/jdhunter/py4science/book' In [10]: cd bookdata/ /home/jdhunter/py4science/book/bookdata In [2]: from pylab import * In [2]: ion() In [3]: im = imread('stinkbug.png') @savefig mystinkbug.png width=4in In [4]: imshow(im) Out[4]: """, r""" In [1]: x = 'hello world' # string methods can be # used to alter the string @doctest In [2]: x.upper() Out[2]: 'HELLO WORLD' @verbatim In [3]: x.st x.startswith x.strip """, r""" In [130]: url = 'http://ichart.finance.yahoo.com/table.csv?s=CROX\ .....: &d=9&e=22&f=2009&g=d&a=1&br=8&c=2006&ignore=.csv' In [131]: print url.split('&') ['http://ichart.finance.yahoo.com/table.csv?s=CROX', 'd=9', 'e=22', 'f=2009', 'g=d', 'a=1', 'b=8', 'c=2006', 'ignore=.csv'] In [60]: import urllib """, r"""\ In [133]: import numpy.random @suppress In [134]: numpy.random.seed(2358) @doctest In [135]: numpy.random.rand(10,2) Out[135]: array([[ 0.64524308, 0.59943846], [ 0.47102322, 0.8715456 ], [ 0.29370834, 0.74776844], [ 0.99539577, 0.1313423 ], [ 0.16250302, 0.21103583], [ 0.81626524, 0.1312433 ], [ 0.67338089, 0.72302393], [ 0.7566368 , 0.07033696], [ 0.22591016, 0.77731835], [ 0.0072729 , 0.34273127]]) """, r""" In [106]: print x jdh In [109]: for i in range(10): .....: print i .....: .....: 0 1 2 3 4 5 6 7 8 9 """, r""" In [144]: from pylab import * In [145]: ion() # use a semicolon to suppress the output @savefig test_hist.png width=4in In [151]: hist(np.random.randn(10000), 100); @savefig test_plot.png width=4in In [151]: plot(np.random.randn(10000), 'o'); """, r""" # use a semicolon to suppress the output In [151]: plt.clf() @savefig plot_simple.png width=4in In [151]: plot([1,2,3]) @savefig hist_simple.png width=4in In [151]: hist(np.random.randn(10000), 100); """, r""" # update the current fig In [151]: ylabel('number') In [152]: title('normal distribution') @savefig hist_with_text.png In [153]: grid(True) """, ] # skip local-file depending first example: examples = examples[1:] #ipython_directive.DEBUG = True # dbg #options = dict(suppress=True) # dbg options = dict() for example in examples: content = example.split('\n') IPythonDirective('debug', arguments=None, options=options, content=content, lineno=0, content_offset=None, block_text=None, state=None, state_machine=None, ) # Run test suite as a script if __name__=='__main__': if not os.path.isdir('_static'): os.mkdir('_static') test() print('All OK? Check figures in _static/')