manifest: repurpose flagsdiff() into (node-and-flag)diff() The manifestdict class already has a method for diff flags between two manifests (presumably because there is no full access to the private _flags field). The only caller is merge.manifestmerge(), which also wants a diff of files between the same manifests. Let's combine the code for diffing files and flags into a single method on manifestdict. This puts all the manifest diffing in one place and will allow for further simplification. It might also be useful for it to be encapsulated in manifestdict if we later decide to to shard manifests. The docstring is intentionally unclear about missing entries for now.