diff --git a/hgext/largefiles/reposetup.py b/hgext/largefiles/reposetup.py
--- a/hgext/largefiles/reposetup.py
+++ b/hgext/largefiles/reposetup.py
@@ -285,6 +285,16 @@ def reposetup(ui, repo):
                                             printmessage=False)
                     result = orig(text=text, user=user, date=date, match=match,
                                     force=force, editor=editor, extra=extra)
+
+                    if result:
+                        lfdirstate = lfutil.openlfdirstate(ui, self)
+                        for f in self[result].files():
+                            if lfutil.isstandin(f):
+                                lfile = lfutil.splitstandin(f)
+                                lfutil.synclfdirstate(self, lfdirstate, lfile,
+                                                      False)
+                        lfdirstate.write()
+
                     return result
                 # Case 1: user calls commit with no specific files or
                 # include/exclude patterns: refresh and commit all files that
diff --git a/tests/test-largefiles-update.t b/tests/test-largefiles-update.t
--- a/tests/test-largefiles-update.t
+++ b/tests/test-largefiles-update.t
@@ -129,4 +129,42 @@ Test that "hg rollback" restores status 
   $ hg status -A largeY
   ? largeY
 
+Test that "hg status" shows status of largefiles correctly just after
+automated commit like rebase/transplant
+
+  $ cat >> .hg/hgrc <<EOF
+  > [extensions]
+  > rebase =
+  > strip =
+  > transplant =
+  > EOF
+  $ hg update -q -C 1
+  $ hg remove large1
+  $ echo largeX > largeX
+  $ hg add --large largeX
+  $ hg commit -m '#4'
+
+  $ hg rebase -s 1 -d 2 --keep
+  $ hg status -A large1
+  large1: No such file or directory
+  $ hg status -A largeX
+  C largeX
+  $ hg strip -q 5
+
+  $ hg update -q -C 2
+  $ hg transplant -q 1 4
+  $ hg status -A large1
+  large1: No such file or directory
+  $ hg status -A largeX
+  C largeX
+  $ hg strip -q 5
+
+  $ hg update -q -C 2
+  $ hg transplant -q --merge 1 --merge 4
+  $ hg status -A large1
+  large1: No such file or directory
+  $ hg status -A largeX
+  C largeX
+  $ hg strip -q 5
+
   $ cd ..