##// END OF EJS Templates
xdiff: add a preprocessing step that trims files...
xdiff: add a preprocessing step that trims files xdiff has a `xdl_trim_ends` step that removes common lines, unmatchable lines. That is in theory good, but happens too late - after splitting, hashing, and adjusting the hash values so they are unique. Those splitting, hashing and adjusting hash values steps could have noticeable overhead. Diffing two large files with minor (one-line-ish) changes are not uncommon. In that case, the raw performance of those preparation steps seriously matter. Even allocating an O(N) array and storing line offsets to it is expensive. Therefore my previous attempts [1] [2] cannot be good enough since they do not remove the O(N) array assignment. This patch adds a preprocessing step - `xdl_trim_files` that runs before other preprocessing steps. It counts common prefix and suffix and lines in them (needed for displaying line number), without doing anything else. Testing with a crafted large (169MB) file, with minor change: ``` open('a','w').write(''.join('%s\n' % (i % 100000) for i in xrange(30000000) if i != 6000000)) open('b','w').write(''.join('%s\n' % (i % 100000) for i in xrange(30000000) if i != 6003000)) ``` Running xdiff by a simple binary [3], this patch improves the xdiff perf by more than 10x for the above case: ``` # xdiff before this patch 2.41s user 1.13s system 98% cpu 3.592 total # xdiff after this patch 0.14s user 0.16s system 98% cpu 0.309 total # gnu diffutils 0.12s user 0.15s system 98% cpu 0.272 total # (best of 20 runs) ``` It's still slightly slower than GNU diffutils. But it's pretty close now. Testing with real repo data: For the whole repo, this patch makes xdiff 25% faster: ``` # hg perfbdiff --count 100 --alldata -c d334afc585e2 --blocks [--xdiff] # xdiff, after ! wall 0.058861 comb 0.050000 user 0.050000 sys 0.000000 (best of 100) # xdiff, before ! wall 0.077816 comb 0.080000 user 0.080000 sys 0.000000 (best of 91) # bdiff ! wall 0.117473 comb 0.120000 user 0.120000 sys 0.000000 (best of 67) ``` For files that are long (ex. commands.py), the speedup is more than 3x, very significant: ``` # hg perfbdiff --count 3000 --blocks commands.py.i 1 [--xdiff] # xdiff, after ! wall 0.690583 comb 0.690000 user 0.690000 sys 0.000000 (best of 12) # xdiff, before ! wall 2.240361 comb 2.210000 user 2.210000 sys 0.000000 (best of 4) # bdiff ! wall 2.469852 comb 2.440000 user 2.440000 sys 0.000000 (best of 4) ``` [1]: https://phab.mercurial-scm.org/D2631 [2]: https://phab.mercurial-scm.org/D2634 [3]: ``` // Code to run xdiff from command line. No proper error handling. #include <stdlib.h> #include <unistd.h> #include <sys/types.h> #include <sys/stat.h> #include <fcntl.h> #include "mercurial/thirdparty/xdiff/xdiff.h" #define ensure(x) if (!(x)) exit(255); mmfile_t readfile(const char *path) { struct stat st; int fd = open(path, O_RDONLY); fstat(fd, &st); mmfile_t file = { malloc(st.st_size), st.st_size }; ensure(read(fd, file.ptr, st.st_size) == st.st_size); close(fd); return file; } int main(int argc, char const *argv[]) { mmfile_t a = readfile(argv[1]), b = readfile(argv[2]); xpparam_t xpp = {0}; xdemitconf_t xecfg = {0}; xdemitcb_t ecb = {0}; xdl_diff(&a, &b, &xpp, &xecfg, &ecb); return 0; } ``` Differential Revision: https://phab.mercurial-scm.org/D2686

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setdiscovery.py
262 lines | 9.2 KiB | text/x-python | PythonLexer
# setdiscovery.py - improved discovery of common nodeset for mercurial
#
# Copyright 2010 Benoit Boissinot <bboissin@gmail.com>
# and Peter Arrenbrecht <peter@arrenbrecht.ch>
#
# This software may be used and distributed according to the terms of the
# GNU General Public License version 2 or any later version.
"""
Algorithm works in the following way. You have two repository: local and
remote. They both contains a DAG of changelists.
The goal of the discovery protocol is to find one set of node *common*,
the set of nodes shared by local and remote.
One of the issue with the original protocol was latency, it could
potentially require lots of roundtrips to discover that the local repo was a
subset of remote (which is a very common case, you usually have few changes
compared to upstream, while upstream probably had lots of development).
The new protocol only requires one interface for the remote repo: `known()`,
which given a set of changelists tells you if they are present in the DAG.
The algorithm then works as follow:
- We will be using three sets, `common`, `missing`, `unknown`. Originally
all nodes are in `unknown`.
- Take a sample from `unknown`, call `remote.known(sample)`
- For each node that remote knows, move it and all its ancestors to `common`
- For each node that remote doesn't know, move it and all its descendants
to `missing`
- Iterate until `unknown` is empty
There are a couple optimizations, first is instead of starting with a random
sample of missing, start by sending all heads, in the case where the local
repo is a subset, you computed the answer in one round trip.
Then you can do something similar to the bisecting strategy used when
finding faulty changesets. Instead of random samples, you can try picking
nodes that will maximize the number of nodes that will be
classified with it (since all ancestors or descendants will be marked as well).
"""
from __future__ import absolute_import
import collections
import random
from .i18n import _
from .node import (
nullid,
nullrev,
)
from . import (
dagutil,
error,
util,
)
def _updatesample(dag, nodes, sample, quicksamplesize=0):
"""update an existing sample to match the expected size
The sample is updated with nodes exponentially distant from each head of the
<nodes> set. (H~1, H~2, H~4, H~8, etc).
If a target size is specified, the sampling will stop once this size is
reached. Otherwise sampling will happen until roots of the <nodes> set are
reached.
:dag: a dag object from dagutil
:nodes: set of nodes we want to discover (if None, assume the whole dag)
:sample: a sample to update
:quicksamplesize: optional target size of the sample"""
# if nodes is empty we scan the entire graph
if nodes:
heads = dag.headsetofconnecteds(nodes)
else:
heads = dag.heads()
dist = {}
visit = collections.deque(heads)
seen = set()
factor = 1
while visit:
curr = visit.popleft()
if curr in seen:
continue
d = dist.setdefault(curr, 1)
if d > factor:
factor *= 2
if d == factor:
sample.add(curr)
if quicksamplesize and (len(sample) >= quicksamplesize):
return
seen.add(curr)
for p in dag.parents(curr):
if not nodes or p in nodes:
dist.setdefault(p, d + 1)
visit.append(p)
def _takequicksample(dag, nodes, size):
"""takes a quick sample of size <size>
It is meant for initial sampling and focuses on querying heads and close
ancestors of heads.
:dag: a dag object
:nodes: set of nodes to discover
:size: the maximum size of the sample"""
sample = dag.headsetofconnecteds(nodes)
if len(sample) >= size:
return _limitsample(sample, size)
_updatesample(dag, None, sample, quicksamplesize=size)
return sample
def _takefullsample(dag, nodes, size):
sample = dag.headsetofconnecteds(nodes)
# update from heads
_updatesample(dag, nodes, sample)
# update from roots
_updatesample(dag.inverse(), nodes, sample)
assert sample
sample = _limitsample(sample, size)
if len(sample) < size:
more = size - len(sample)
sample.update(random.sample(list(nodes - sample), more))
return sample
def _limitsample(sample, desiredlen):
"""return a random subset of sample of at most desiredlen item"""
if len(sample) > desiredlen:
sample = set(random.sample(sample, desiredlen))
return sample
def findcommonheads(ui, local, remote,
initialsamplesize=100,
fullsamplesize=200,
abortwhenunrelated=True,
ancestorsof=None):
'''Return a tuple (common, anyincoming, remoteheads) used to identify
missing nodes from or in remote.
'''
start = util.timer()
roundtrips = 0
cl = local.changelog
localsubset = None
if ancestorsof is not None:
rev = local.changelog.rev
localsubset = [rev(n) for n in ancestorsof]
dag = dagutil.revlogdag(cl, localsubset=localsubset)
# early exit if we know all the specified remote heads already
ui.debug("query 1; heads\n")
roundtrips += 1
ownheads = dag.heads()
sample = _limitsample(ownheads, initialsamplesize)
# indices between sample and externalized version must match
sample = list(sample)
batch = remote.iterbatch()
batch.heads()
batch.known(dag.externalizeall(sample))
batch.submit()
srvheadhashes, yesno = batch.results()
if cl.tip() == nullid:
if srvheadhashes != [nullid]:
return [nullid], True, srvheadhashes
return [nullid], False, []
# start actual discovery (we note this before the next "if" for
# compatibility reasons)
ui.status(_("searching for changes\n"))
srvheads = dag.internalizeall(srvheadhashes, filterunknown=True)
if len(srvheads) == len(srvheadhashes):
ui.debug("all remote heads known locally\n")
return (srvheadhashes, False, srvheadhashes,)
if len(sample) == len(ownheads) and all(yesno):
ui.note(_("all local heads known remotely\n"))
ownheadhashes = dag.externalizeall(ownheads)
return (ownheadhashes, True, srvheadhashes,)
# full blown discovery
# own nodes I know we both know
# treat remote heads (and maybe own heads) as a first implicit sample
# response
common = cl.incrementalmissingrevs(srvheads)
commoninsample = set(n for i, n in enumerate(sample) if yesno[i])
common.addbases(commoninsample)
# own nodes where I don't know if remote knows them
undecided = set(common.missingancestors(ownheads))
# own nodes I know remote lacks
missing = set()
full = False
while undecided:
if sample:
missinginsample = [n for i, n in enumerate(sample) if not yesno[i]]
missing.update(dag.descendantset(missinginsample, missing))
undecided.difference_update(missing)
if not undecided:
break
if full or common.hasbases():
if full:
ui.note(_("sampling from both directions\n"))
else:
ui.debug("taking initial sample\n")
samplefunc = _takefullsample
targetsize = fullsamplesize
else:
# use even cheaper initial sample
ui.debug("taking quick initial sample\n")
samplefunc = _takequicksample
targetsize = initialsamplesize
if len(undecided) < targetsize:
sample = list(undecided)
else:
sample = samplefunc(dag, undecided, targetsize)
roundtrips += 1
ui.progress(_('searching'), roundtrips, unit=_('queries'))
ui.debug("query %i; still undecided: %i, sample size is: %i\n"
% (roundtrips, len(undecided), len(sample)))
# indices between sample and externalized version must match
sample = list(sample)
yesno = remote.known(dag.externalizeall(sample))
full = True
if sample:
commoninsample = set(n for i, n in enumerate(sample) if yesno[i])
common.addbases(commoninsample)
common.removeancestorsfrom(undecided)
# heads(common) == heads(common.bases) since common represents common.bases
# and all its ancestors
result = dag.headsetofconnecteds(common.bases)
# common.bases can include nullrev, but our contract requires us to not
# return any heads in that case, so discard that
result.discard(nullrev)
elapsed = util.timer() - start
ui.progress(_('searching'), None)
ui.debug("%d total queries in %.4fs\n" % (roundtrips, elapsed))
msg = ('found %d common and %d unknown server heads,'
' %d roundtrips in %.4fs\n')
missing = set(result) - set(srvheads)
ui.log('discovery', msg, len(result), len(missing), roundtrips,
elapsed)
if not result and srvheadhashes != [nullid]:
if abortwhenunrelated:
raise error.Abort(_("repository is unrelated"))
else:
ui.warn(_("warning: repository is unrelated\n"))
return ({nullid}, True, srvheadhashes,)
anyincoming = (srvheadhashes != [nullid])
return dag.externalizeall(result), anyincoming, srvheadhashes