##// END OF EJS Templates
xdiff: add a preprocessing step that trims files...
xdiff: add a preprocessing step that trims files xdiff has a `xdl_trim_ends` step that removes common lines, unmatchable lines. That is in theory good, but happens too late - after splitting, hashing, and adjusting the hash values so they are unique. Those splitting, hashing and adjusting hash values steps could have noticeable overhead. Diffing two large files with minor (one-line-ish) changes are not uncommon. In that case, the raw performance of those preparation steps seriously matter. Even allocating an O(N) array and storing line offsets to it is expensive. Therefore my previous attempts [1] [2] cannot be good enough since they do not remove the O(N) array assignment. This patch adds a preprocessing step - `xdl_trim_files` that runs before other preprocessing steps. It counts common prefix and suffix and lines in them (needed for displaying line number), without doing anything else. Testing with a crafted large (169MB) file, with minor change: ``` open('a','w').write(''.join('%s\n' % (i % 100000) for i in xrange(30000000) if i != 6000000)) open('b','w').write(''.join('%s\n' % (i % 100000) for i in xrange(30000000) if i != 6003000)) ``` Running xdiff by a simple binary [3], this patch improves the xdiff perf by more than 10x for the above case: ``` # xdiff before this patch 2.41s user 1.13s system 98% cpu 3.592 total # xdiff after this patch 0.14s user 0.16s system 98% cpu 0.309 total # gnu diffutils 0.12s user 0.15s system 98% cpu 0.272 total # (best of 20 runs) ``` It's still slightly slower than GNU diffutils. But it's pretty close now. Testing with real repo data: For the whole repo, this patch makes xdiff 25% faster: ``` # hg perfbdiff --count 100 --alldata -c d334afc585e2 --blocks [--xdiff] # xdiff, after ! wall 0.058861 comb 0.050000 user 0.050000 sys 0.000000 (best of 100) # xdiff, before ! wall 0.077816 comb 0.080000 user 0.080000 sys 0.000000 (best of 91) # bdiff ! wall 0.117473 comb 0.120000 user 0.120000 sys 0.000000 (best of 67) ``` For files that are long (ex. commands.py), the speedup is more than 3x, very significant: ``` # hg perfbdiff --count 3000 --blocks commands.py.i 1 [--xdiff] # xdiff, after ! wall 0.690583 comb 0.690000 user 0.690000 sys 0.000000 (best of 12) # xdiff, before ! wall 2.240361 comb 2.210000 user 2.210000 sys 0.000000 (best of 4) # bdiff ! wall 2.469852 comb 2.440000 user 2.440000 sys 0.000000 (best of 4) ``` [1]: https://phab.mercurial-scm.org/D2631 [2]: https://phab.mercurial-scm.org/D2634 [3]: ``` // Code to run xdiff from command line. No proper error handling. #include <stdlib.h> #include <unistd.h> #include <sys/types.h> #include <sys/stat.h> #include <fcntl.h> #include "mercurial/thirdparty/xdiff/xdiff.h" #define ensure(x) if (!(x)) exit(255); mmfile_t readfile(const char *path) { struct stat st; int fd = open(path, O_RDONLY); fstat(fd, &st); mmfile_t file = { malloc(st.st_size), st.st_size }; ensure(read(fd, file.ptr, st.st_size) == st.st_size); close(fd); return file; } int main(int argc, char const *argv[]) { mmfile_t a = readfile(argv[1]), b = readfile(argv[2]); xpparam_t xpp = {0}; xdemitconf_t xecfg = {0}; xdemitcb_t ecb = {0}; xdl_diff(&a, &b, &xpp, &xecfg, &ecb); return 0; } ``` Differential Revision: https://phab.mercurial-scm.org/D2686

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verify.py
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# verify.py - repository integrity checking for Mercurial
#
# Copyright 2006, 2007 Matt Mackall <mpm@selenic.com>
#
# This software may be used and distributed according to the terms of the
# GNU General Public License version 2 or any later version.
from __future__ import absolute_import
import os
from .i18n import _
from .node import (
nullid,
short,
)
from . import (
error,
pycompat,
revlog,
scmutil,
util,
)
def verify(repo):
with repo.lock():
return verifier(repo).verify()
def _normpath(f):
# under hg < 2.4, convert didn't sanitize paths properly, so a
# converted repo may contain repeated slashes
while '//' in f:
f = f.replace('//', '/')
return f
class verifier(object):
# The match argument is always None in hg core, but e.g. the narrowhg
# extension will pass in a matcher here.
def __init__(self, repo, match=None):
self.repo = repo.unfiltered()
self.ui = repo.ui
self.match = match or scmutil.matchall(repo)
self.badrevs = set()
self.errors = 0
self.warnings = 0
self.havecl = len(repo.changelog) > 0
self.havemf = len(repo.manifestlog._revlog) > 0
self.revlogv1 = repo.changelog.version != revlog.REVLOGV0
self.lrugetctx = util.lrucachefunc(repo.changectx)
self.refersmf = False
self.fncachewarned = False
# developer config: verify.skipflags
self.skipflags = repo.ui.configint('verify', 'skipflags')
def warn(self, msg):
self.ui.warn(msg + "\n")
self.warnings += 1
def err(self, linkrev, msg, filename=None):
if linkrev is not None:
self.badrevs.add(linkrev)
linkrev = "%d" % linkrev
else:
linkrev = '?'
msg = "%s: %s" % (linkrev, msg)
if filename:
msg = "%s@%s" % (filename, msg)
self.ui.warn(" " + msg + "\n")
self.errors += 1
def exc(self, linkrev, msg, inst, filename=None):
fmsg = pycompat.bytestr(inst)
if not fmsg:
fmsg = pycompat.byterepr(inst)
self.err(linkrev, "%s: %s" % (msg, fmsg), filename)
def checklog(self, obj, name, linkrev):
if not len(obj) and (self.havecl or self.havemf):
self.err(linkrev, _("empty or missing %s") % name)
return
d = obj.checksize()
if d[0]:
self.err(None, _("data length off by %d bytes") % d[0], name)
if d[1]:
self.err(None, _("index contains %d extra bytes") % d[1], name)
if obj.version != revlog.REVLOGV0:
if not self.revlogv1:
self.warn(_("warning: `%s' uses revlog format 1") % name)
elif self.revlogv1:
self.warn(_("warning: `%s' uses revlog format 0") % name)
def checkentry(self, obj, i, node, seen, linkrevs, f):
lr = obj.linkrev(obj.rev(node))
if lr < 0 or (self.havecl and lr not in linkrevs):
if lr < 0 or lr >= len(self.repo.changelog):
msg = _("rev %d points to nonexistent changeset %d")
else:
msg = _("rev %d points to unexpected changeset %d")
self.err(None, msg % (i, lr), f)
if linkrevs:
if f and len(linkrevs) > 1:
try:
# attempt to filter down to real linkrevs
linkrevs = [l for l in linkrevs
if self.lrugetctx(l)[f].filenode() == node]
except Exception:
pass
self.warn(_(" (expected %s)") % " ".join
(map(pycompat.bytestr, linkrevs)))
lr = None # can't be trusted
try:
p1, p2 = obj.parents(node)
if p1 not in seen and p1 != nullid:
self.err(lr, _("unknown parent 1 %s of %s") %
(short(p1), short(node)), f)
if p2 not in seen and p2 != nullid:
self.err(lr, _("unknown parent 2 %s of %s") %
(short(p2), short(node)), f)
except Exception as inst:
self.exc(lr, _("checking parents of %s") % short(node), inst, f)
if node in seen:
self.err(lr, _("duplicate revision %d (%d)") % (i, seen[node]), f)
seen[node] = i
return lr
def verify(self):
repo = self.repo
ui = repo.ui
if not repo.url().startswith('file:'):
raise error.Abort(_("cannot verify bundle or remote repos"))
if os.path.exists(repo.sjoin("journal")):
ui.warn(_("abandoned transaction found - run hg recover\n"))
if ui.verbose or not self.revlogv1:
ui.status(_("repository uses revlog format %d\n") %
(self.revlogv1 and 1 or 0))
mflinkrevs, filelinkrevs = self._verifychangelog()
filenodes = self._verifymanifest(mflinkrevs)
del mflinkrevs
self._crosscheckfiles(filelinkrevs, filenodes)
totalfiles, filerevisions = self._verifyfiles(filenodes, filelinkrevs)
ui.status(_("%d files, %d changesets, %d total revisions\n") %
(totalfiles, len(repo.changelog), filerevisions))
if self.warnings:
ui.warn(_("%d warnings encountered!\n") % self.warnings)
if self.fncachewarned:
ui.warn(_('hint: run "hg debugrebuildfncache" to recover from '
'corrupt fncache\n'))
if self.errors:
ui.warn(_("%d integrity errors encountered!\n") % self.errors)
if self.badrevs:
ui.warn(_("(first damaged changeset appears to be %d)\n")
% min(self.badrevs))
return 1
def _verifychangelog(self):
ui = self.ui
repo = self.repo
match = self.match
cl = repo.changelog
ui.status(_("checking changesets\n"))
mflinkrevs = {}
filelinkrevs = {}
seen = {}
self.checklog(cl, "changelog", 0)
total = len(repo)
for i in repo:
ui.progress(_('checking'), i, total=total, unit=_('changesets'))
n = cl.node(i)
self.checkentry(cl, i, n, seen, [i], "changelog")
try:
changes = cl.read(n)
if changes[0] != nullid:
mflinkrevs.setdefault(changes[0], []).append(i)
self.refersmf = True
for f in changes[3]:
if match(f):
filelinkrevs.setdefault(_normpath(f), []).append(i)
except Exception as inst:
self.refersmf = True
self.exc(i, _("unpacking changeset %s") % short(n), inst)
ui.progress(_('checking'), None)
return mflinkrevs, filelinkrevs
def _verifymanifest(self, mflinkrevs, dir="", storefiles=None,
progress=None):
repo = self.repo
ui = self.ui
match = self.match
mfl = self.repo.manifestlog
mf = mfl._revlog.dirlog(dir)
if not dir:
self.ui.status(_("checking manifests\n"))
filenodes = {}
subdirnodes = {}
seen = {}
label = "manifest"
if dir:
label = dir
revlogfiles = mf.files()
storefiles.difference_update(revlogfiles)
if progress: # should be true since we're in a subdirectory
progress()
if self.refersmf:
# Do not check manifest if there are only changelog entries with
# null manifests.
self.checklog(mf, label, 0)
total = len(mf)
for i in mf:
if not dir:
ui.progress(_('checking'), i, total=total, unit=_('manifests'))
n = mf.node(i)
lr = self.checkentry(mf, i, n, seen, mflinkrevs.get(n, []), label)
if n in mflinkrevs:
del mflinkrevs[n]
elif dir:
self.err(lr, _("%s not in parent-directory manifest") %
short(n), label)
else:
self.err(lr, _("%s not in changesets") % short(n), label)
try:
mfdelta = mfl.get(dir, n).readdelta(shallow=True)
for f, fn, fl in mfdelta.iterentries():
if not f:
self.err(lr, _("entry without name in manifest"))
elif f == "/dev/null": # ignore this in very old repos
continue
fullpath = dir + _normpath(f)
if fl == 't':
if not match.visitdir(fullpath):
continue
subdirnodes.setdefault(fullpath + '/', {}).setdefault(
fn, []).append(lr)
else:
if not match(fullpath):
continue
filenodes.setdefault(fullpath, {}).setdefault(fn, lr)
except Exception as inst:
self.exc(lr, _("reading delta %s") % short(n), inst, label)
if not dir:
ui.progress(_('checking'), None)
if self.havemf:
for c, m in sorted([(c, m) for m in mflinkrevs
for c in mflinkrevs[m]]):
if dir:
self.err(c, _("parent-directory manifest refers to unknown "
"revision %s") % short(m), label)
else:
self.err(c, _("changeset refers to unknown revision %s") %
short(m), label)
if not dir and subdirnodes:
self.ui.status(_("checking directory manifests\n"))
storefiles = set()
subdirs = set()
revlogv1 = self.revlogv1
for f, f2, size in repo.store.datafiles():
if not f:
self.err(None, _("cannot decode filename '%s'") % f2)
elif (size > 0 or not revlogv1) and f.startswith('meta/'):
storefiles.add(_normpath(f))
subdirs.add(os.path.dirname(f))
subdircount = len(subdirs)
currentsubdir = [0]
def progress():
currentsubdir[0] += 1
ui.progress(_('checking'), currentsubdir[0], total=subdircount,
unit=_('manifests'))
for subdir, linkrevs in subdirnodes.iteritems():
subdirfilenodes = self._verifymanifest(linkrevs, subdir, storefiles,
progress)
for f, onefilenodes in subdirfilenodes.iteritems():
filenodes.setdefault(f, {}).update(onefilenodes)
if not dir and subdirnodes:
ui.progress(_('checking'), None)
for f in sorted(storefiles):
self.warn(_("warning: orphan revlog '%s'") % f)
return filenodes
def _crosscheckfiles(self, filelinkrevs, filenodes):
repo = self.repo
ui = self.ui
ui.status(_("crosschecking files in changesets and manifests\n"))
total = len(filelinkrevs) + len(filenodes)
count = 0
if self.havemf:
for f in sorted(filelinkrevs):
count += 1
ui.progress(_('crosschecking'), count, total=total)
if f not in filenodes:
lr = filelinkrevs[f][0]
self.err(lr, _("in changeset but not in manifest"), f)
if self.havecl:
for f in sorted(filenodes):
count += 1
ui.progress(_('crosschecking'), count, total=total)
if f not in filelinkrevs:
try:
fl = repo.file(f)
lr = min([fl.linkrev(fl.rev(n)) for n in filenodes[f]])
except Exception:
lr = None
self.err(lr, _("in manifest but not in changeset"), f)
ui.progress(_('crosschecking'), None)
def _verifyfiles(self, filenodes, filelinkrevs):
repo = self.repo
ui = self.ui
lrugetctx = self.lrugetctx
revlogv1 = self.revlogv1
havemf = self.havemf
ui.status(_("checking files\n"))
storefiles = set()
for f, f2, size in repo.store.datafiles():
if not f:
self.err(None, _("cannot decode filename '%s'") % f2)
elif (size > 0 or not revlogv1) and f.startswith('data/'):
storefiles.add(_normpath(f))
files = sorted(set(filenodes) | set(filelinkrevs))
total = len(files)
revisions = 0
for i, f in enumerate(files):
ui.progress(_('checking'), i, item=f, total=total, unit=_('files'))
try:
linkrevs = filelinkrevs[f]
except KeyError:
# in manifest but not in changelog
linkrevs = []
if linkrevs:
lr = linkrevs[0]
else:
lr = None
try:
fl = repo.file(f)
except error.RevlogError as e:
self.err(lr, _("broken revlog! (%s)") % e, f)
continue
for ff in fl.files():
try:
storefiles.remove(ff)
except KeyError:
self.warn(_(" warning: revlog '%s' not in fncache!") % ff)
self.fncachewarned = True
self.checklog(fl, f, lr)
seen = {}
rp = None
for i in fl:
revisions += 1
n = fl.node(i)
lr = self.checkentry(fl, i, n, seen, linkrevs, f)
if f in filenodes:
if havemf and n not in filenodes[f]:
self.err(lr, _("%s not in manifests") % (short(n)), f)
else:
del filenodes[f][n]
# Verify contents. 4 cases to care about:
#
# common: the most common case
# rename: with a rename
# meta: file content starts with b'\1\n', the metadata
# header defined in filelog.py, but without a rename
# ext: content stored externally
#
# More formally, their differences are shown below:
#
# | common | rename | meta | ext
# -------------------------------------------------------
# flags() | 0 | 0 | 0 | not 0
# renamed() | False | True | False | ?
# rawtext[0:2]=='\1\n'| False | True | True | ?
#
# "rawtext" means the raw text stored in revlog data, which
# could be retrieved by "revision(rev, raw=True)". "text"
# mentioned below is "revision(rev, raw=False)".
#
# There are 3 different lengths stored physically:
# 1. L1: rawsize, stored in revlog index
# 2. L2: len(rawtext), stored in revlog data
# 3. L3: len(text), stored in revlog data if flags==0, or
# possibly somewhere else if flags!=0
#
# L1 should be equal to L2. L3 could be different from them.
# "text" may or may not affect commit hash depending on flag
# processors (see revlog.addflagprocessor).
#
# | common | rename | meta | ext
# -------------------------------------------------
# rawsize() | L1 | L1 | L1 | L1
# size() | L1 | L2-LM | L1(*) | L1 (?)
# len(rawtext) | L2 | L2 | L2 | L2
# len(text) | L2 | L2 | L2 | L3
# len(read()) | L2 | L2-LM | L2-LM | L3 (?)
#
# LM: length of metadata, depending on rawtext
# (*): not ideal, see comment in filelog.size
# (?): could be "- len(meta)" if the resolved content has
# rename metadata
#
# Checks needed to be done:
# 1. length check: L1 == L2, in all cases.
# 2. hash check: depending on flag processor, we may need to
# use either "text" (external), or "rawtext" (in revlog).
try:
skipflags = self.skipflags
if skipflags:
skipflags &= fl.flags(i)
if not skipflags:
fl.read(n) # side effect: read content and do checkhash
rp = fl.renamed(n)
# the "L1 == L2" check
l1 = fl.rawsize(i)
l2 = len(fl.revision(n, raw=True))
if l1 != l2:
self.err(lr, _("unpacked size is %s, %s expected") %
(l2, l1), f)
except error.CensoredNodeError:
# experimental config: censor.policy
if ui.config("censor", "policy") == "abort":
self.err(lr, _("censored file data"), f)
except Exception as inst:
self.exc(lr, _("unpacking %s") % short(n), inst, f)
# check renames
try:
if rp:
if lr is not None and ui.verbose:
ctx = lrugetctx(lr)
if not any(rp[0] in pctx for pctx in ctx.parents()):
self.warn(_("warning: copy source of '%s' not"
" in parents of %s") % (f, ctx))
fl2 = repo.file(rp[0])
if not len(fl2):
self.err(lr, _("empty or missing copy source "
"revlog %s:%s") % (rp[0], short(rp[1])), f)
elif rp[1] == nullid:
ui.note(_("warning: %s@%s: copy source"
" revision is nullid %s:%s\n")
% (f, lr, rp[0], short(rp[1])))
else:
fl2.rev(rp[1])
except Exception as inst:
self.exc(lr, _("checking rename of %s") % short(n), inst, f)
# cross-check
if f in filenodes:
fns = [(v, k) for k, v in filenodes[f].iteritems()]
for lr, node in sorted(fns):
self.err(lr, _("manifest refers to unknown revision %s") %
short(node), f)
ui.progress(_('checking'), None)
for f in sorted(storefiles):
self.warn(_("warning: orphan revlog '%s'") % f)
return len(files), revisions