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ipclusterapp.py
618 lines | 21.8 KiB | text/x-python | PythonLexer
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r3605 #!/usr/bin/env python
# encoding: utf-8
"""
The ipcluster application.
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r4018
Authors:
* Brian Granger
* MinRK
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r3605 """
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r13348 from __future__ import print_function
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r3605
#-----------------------------------------------------------------------------
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r4018 # Copyright (C) 2008-2011 The IPython Development Team
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r3605 #
# Distributed under the terms of the BSD License. The full license is in
# the file COPYING, distributed as part of this software.
#-----------------------------------------------------------------------------
#-----------------------------------------------------------------------------
# Imports
#-----------------------------------------------------------------------------
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r3631 import errno
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r3605 import logging
import os
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r3631 import re
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r3605 import signal
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r3846 from subprocess import check_call, CalledProcessError, PIPE
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r3624 import zmq
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r3605 from zmq.eventloop import ioloop
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r5214 from IPython.config.application import Application, boolean_flag, catch_config_error
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r3985 from IPython.config.loader import Config
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r4024 from IPython.core.application import BaseIPythonApplication
from IPython.core.profiledir import ProfileDir
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r4019 from IPython.utils.daemonize import daemonize
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r3605 from IPython.utils.importstring import import_item
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r13353 from IPython.utils.py3compat import string_types
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r4247 from IPython.utils.sysinfo import num_cpus
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r5344 from IPython.utils.traitlets import (Integer, Unicode, Bool, CFloat, Dict, List, Any,
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r4055 DottedObjectName)
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r3688
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r3993 from IPython.parallel.apps.baseapp import (
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r3992 BaseParallelApplication,
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r3985 PIDFileError,
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r3986 base_flags, base_aliases
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r3605 )
#-----------------------------------------------------------------------------
# Module level variables
#-----------------------------------------------------------------------------
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r3990 _description = """Start an IPython cluster for parallel computing.
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An IPython cluster consists of 1 controller and 1 or more engines.
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r11003 This command automates the startup of these processes using a wide range of
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r11004 startup methods (SSH, local processes, PBS, mpiexec, SGE, LSF, HTCondor,
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r3605 Windows HPC Server 2008). To start a cluster with 4 engines on your
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r4216 local host simply do 'ipcluster start --n=4'. For more complex usage
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r4397 you will typically do 'ipython profile create mycluster --parallel', then edit
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r4216 configuration files, followed by 'ipcluster start --profile=mycluster --n=4'.
"""
_main_examples = """
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r4218 ipcluster start --n=4 # start a 4 node cluster on localhost
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r4216 ipcluster start -h # show the help string for the start subcmd
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r4218
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r4216 ipcluster stop -h # show the help string for the stop subcmd
ipcluster engines -h # show the help string for the engines subcmd
"""
_start_examples = """
ipython profile create mycluster --parallel # create mycluster profile
ipcluster start --profile=mycluster --n=4 # start mycluster with 4 nodes
"""
_stop_examples = """
ipcluster stop --profile=mycluster # stop a running cluster by profile name
"""
_engines_examples = """
ipcluster engines --profile=mycluster --n=4 # start 4 engines only
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r3605 """
# Exit codes for ipcluster
# This will be the exit code if the ipcluster appears to be running because
# a .pid file exists
ALREADY_STARTED = 10
# This will be the exit code if ipcluster stop is run, but there is not .pid
# file to be found.
ALREADY_STOPPED = 11
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r3615 # This will be the exit code if ipcluster engines is run, but there is not .pid
# file to be found.
NO_CLUSTER = 12
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r3605
#-----------------------------------------------------------------------------
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r6199 # Utilities
#-----------------------------------------------------------------------------
def find_launcher_class(clsname, kind):
"""Return a launcher for a given clsname and kind.
Parameters
==========
clsname : str
The full name of the launcher class, either with or without the
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r11004 module path, or an abbreviation (MPI, SSH, SGE, PBS, LSF, HTCondor
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r6199 WindowsHPC).
kind : str
Either 'EngineSet' or 'Controller'.
"""
if '.' not in clsname:
# not a module, presume it's the raw name in apps.launcher
if kind and kind not in clsname:
# doesn't match necessary full class name, assume it's
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r11003 # just 'PBS' or 'MPI' etc prefix:
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r6199 clsname = clsname + kind + 'Launcher'
clsname = 'IPython.parallel.apps.launcher.'+clsname
klass = import_item(clsname)
return klass
#-----------------------------------------------------------------------------
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r3985 # Main application
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r3605 #-----------------------------------------------------------------------------
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r6199
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r3990 start_help = """Start an IPython cluster for parallel computing
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r3986 Start an ipython cluster by its profile name or cluster
directory. Cluster directories contain configuration, log and
security related files and are named using the convention
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r4024 'profile_<name>' and should be creating using the 'start'
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r4872 subcommand of 'ipcluster'. If your cluster directory is in
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r3986 the cwd or the ipython directory, you can simply refer to it
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r4218 using its profile name, 'ipcluster start --n=4 --profile=<profile>`,
otherwise use the 'profile-dir' option.
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r3986 """
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r3990 stop_help = """Stop a running IPython cluster
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r3986 Stop a running ipython cluster by its profile name or cluster
directory. Cluster directories are named using the convention
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r4872 'profile_<name>'. If your cluster directory is in
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r3986 the cwd or the ipython directory, you can simply refer to it
Brian E. Granger
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r4218 using its profile name, 'ipcluster stop --profile=<profile>`, otherwise
use the '--profile-dir' option.
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r3986 """
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r3990 engines_help = """Start engines connected to an existing IPython cluster
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r3986 Start one or more engines to connect to an existing Cluster
by profile name or cluster directory.
Cluster directories contain configuration, log and
security related files and are named using the convention
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r4024 'profile_<name>' and should be creating using the 'start'
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r4872 subcommand of 'ipcluster'. If your cluster directory is in
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r3986 the cwd or the ipython directory, you can simply refer to it
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r4218 using its profile name, 'ipcluster engines --n=4 --profile=<profile>`,
otherwise use the 'profile-dir' option.
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r3986 """
stop_aliases = dict(
signal='IPClusterStop.signal',
)
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r4114 stop_aliases.update(base_aliases)
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r3992 class IPClusterStop(BaseParallelApplication):
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r3986 name = u'ipcluster'
description = stop_help
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r4216 examples = _stop_examples
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r5344 signal = Integer(signal.SIGINT, config=True,
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r3986 help="signal to use for stopping processes.")
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r3986 aliases = Dict(stop_aliases)
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r3986 def start(self):
"""Start the app for the stop subcommand."""
try:
pid = self.get_pid_from_file()
except PIDFileError:
self.log.critical(
'Could not read pid file, cluster is probably not running.'
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r3986 # Here I exit with a unusual exit status that other processes
# can watch for to learn how I existed.
self.remove_pid_file()
self.exit(ALREADY_STOPPED)
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r3986 if not self.check_pid(pid):
self.log.critical(
'Cluster [pid=%r] is not running.' % pid
)
self.remove_pid_file()
# Here I exit with a unusual exit status that other processes
# can watch for to learn how I existed.
self.exit(ALREADY_STOPPED)
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r3986 elif os.name=='posix':
sig = self.signal
self.log.info(
"Stopping cluster [pid=%r] with [signal=%r]" % (pid, sig)
)
try:
os.kill(pid, sig)
except OSError:
self.log.error("Stopping cluster failed, assuming already dead.",
exc_info=True)
self.remove_pid_file()
elif os.name=='nt':
try:
# kill the whole tree
p = check_call(['taskkill', '-pid', str(pid), '-t', '-f'], stdout=PIPE,stderr=PIPE)
except (CalledProcessError, OSError):
self.log.error("Stopping cluster failed, assuming already dead.",
exc_info=True)
self.remove_pid_file()
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r3986 engine_aliases = {}
engine_aliases.update(base_aliases)
engine_aliases.update(dict(
n='IPClusterEngines.n',
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r4115 engines = 'IPClusterEngines.engine_launcher_class',
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r4114 daemonize = 'IPClusterEngines.daemonize',
))
engine_flags = {}
engine_flags.update(base_flags)
engine_flags.update(dict(
daemonize=(
{'IPClusterEngines' : {'daemonize' : True}},
"""run the cluster into the background (not available on Windows)""",
)
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r3986 ))
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r3992 class IPClusterEngines(BaseParallelApplication):
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name = u'ipcluster'
description = engines_help
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r4216 examples = _engines_examples
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r3986 usage = None
default_log_level = logging.INFO
classes = List()
def _classes_default(self):
from IPython.parallel.apps import launcher
launchers = launcher.all_launchers
eslaunchers = [ l for l in launchers if 'EngineSet' in l.__name__]
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r3992 return [ProfileDir]+eslaunchers
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r5344 n = Integer(num_cpus(), config=True,
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r4247 help="""The number of engines to start. The default is to use one for each
CPU on your machine""")
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r3985
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r5182 engine_launcher = Any(config=True, help="Deprecated, use engine_launcher_class")
def _engine_launcher_changed(self, name, old, new):
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r13353 if isinstance(new, string_types):
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r5182 self.log.warn("WARNING: %s.engine_launcher is deprecated as of 0.12,"
" use engine_launcher_class" % self.__class__.__name__)
self.engine_launcher_class = new
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r4055 engine_launcher_class = DottedObjectName('LocalEngineSetLauncher',
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r3986 config=True,
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r4247 help="""The class for launching a set of Engines. Change this value
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r5696 to use various batch systems to launch your engines, such as PBS,SGE,MPI,etc.
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r4247 Each launcher class has its own set of configuration options, for making sure
it will work in your environment.
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r4247 You can also write your own launcher, and specify it's absolute import path,
as in 'mymodule.launcher.FTLEnginesLauncher`.
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r5696 IPython's bundled examples include:
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r5696 Local : start engines locally as subprocesses [default]
MPI : use mpiexec to launch engines in an MPI environment
PBS : use PBS (qsub) to submit engines to a batch queue
SGE : use SGE (qsub) to submit engines to a batch queue
LSF : use LSF (bsub) to submit engines to a batch queue
SSH : use SSH to start the controller
Note that SSH does *not* move the connection files
around, so you will likely have to do this manually
unless the machines are on a shared file system.
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r11004 HTCondor : use HTCondor to submit engines to a batch queue
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r5696 WindowsHPC : use Windows HPC
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r5183
If you are using one of IPython's builtin launchers, you can specify just the
prefix, e.g:
c.IPClusterEngines.engine_launcher_class = 'SSH'
or:
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r5696 ipcluster start --engines=MPI
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r5183
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r4247 """
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r3605 )
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r3986 daemonize = Bool(False, config=True,
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r4114 help="""Daemonize the ipcluster program. This implies --log-to-file.
Not available on Windows.
""")
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r3605
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r3986 def _daemonize_changed(self, name, old, new):
if new:
self.log_to_file = True
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r5344 early_shutdown = Integer(30, config=True, help="The timeout (in seconds)")
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r5205 _stopping = False
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r3986 aliases = Dict(engine_aliases)
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r4114 flags = Dict(engine_flags)
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r3986
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r5214 @catch_config_error
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r3986 def initialize(self, argv=None):
super(IPClusterEngines, self).initialize(argv)
self.init_signal()
self.init_launchers()
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r3986 def init_launchers(self):
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r4851 self.engine_launcher = self.build_launcher(self.engine_launcher_class, 'EngineSet')
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r3986 def init_signal(self):
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r3605 # Setup signals
signal.signal(signal.SIGINT, self.sigint_handler)
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r4872
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r4851 def build_launcher(self, clsname, kind=None):
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r3986 """import and instantiate a Launcher based on importstring"""
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r4247 try:
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r6199 klass = find_launcher_class(clsname, kind)
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r4247 except (ImportError, KeyError):
self.log.fatal("Could not import launcher class: %r"%clsname)
self.exit(1)
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r3605
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r3986 launcher = klass(
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r11064 work_dir=u'.', parent=self, log=self.log,
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r4848 profile_dir=self.profile_dir.location, cluster_id=self.cluster_id,
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r3605 )
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r3986 return launcher
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r5218 def engines_started_ok(self):
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r5205 self.log.info("Engines appear to have started successfully")
self.early_shutdown = 0
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r3986 def start_engines(self):
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r5754 # Some EngineSetLaunchers ignore `n` and use their own engine count, such as SSH:
n = getattr(self.engine_launcher, 'engine_count', self.n)
self.log.info("Starting %s Engines with %s", n, self.engine_launcher_class)
chapmanb
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r15294 try:
self.engine_launcher.start(self.n)
except:
self.log.exception("Engine start failed")
raise
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r5205 self.engine_launcher.on_stop(self.engines_stopped_early)
if self.early_shutdown:
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r5218 ioloop.DelayedCallback(self.engines_started_ok, self.early_shutdown*1000, self.loop).start()
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r5205
def engines_stopped_early(self, r):
if self.early_shutdown and not self._stopping:
self.log.error("""
Engines shutdown early, they probably failed to connect.
Check the engine log files for output.
If your controller and engines are not on the same machine, you probably
have to instruct the controller to listen on an interface other than localhost.
You can set this by adding "--ip='*'" to your ControllerLauncher.controller_args.
Be sure to read our security docs before instructing your controller to listen on
a public interface.
""")
self.stop_launchers()
return self.engines_stopped(r)
def engines_stopped(self, r):
return self.loop.stop()
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r3986 def stop_engines(self):
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r3605 if self.engine_launcher.running:
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r5205 self.log.info("Stopping Engines...")
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r3605 d = self.engine_launcher.stop()
return d
else:
return None
def stop_launchers(self, r=None):
if not self._stopping:
self._stopping = True
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r3610 self.log.error("IPython cluster: stopping")
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r3986 self.stop_engines()
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r3605 # Wait a few seconds to let things shut down.
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r5205 dc = ioloop.DelayedCallback(self.loop.stop, 3000, self.loop)
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r3605 dc.start()
def sigint_handler(self, signum, frame):
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r3986 self.log.debug("SIGINT received, stopping launchers...")
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r3605 self.stop_launchers()
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r3605 def start_logging(self):
# Remove old log files of the controller and engine
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r3985 if self.clean_logs:
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r3992 log_dir = self.profile_dir.log_dir
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r3605 for f in os.listdir(log_dir):
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r14626 if re.match(r'ip(engine|controller)-.+\.(log|err|out)',f):
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r3613 os.remove(os.path.join(log_dir, f))
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r3605
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r3985 def start(self):
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r3986 """Start the app for the engines subcommand."""
self.log.info("IPython cluster: started")
# First see if the cluster is already running
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r3986 # Now log and daemonize
self.log.info(
'Starting engines with [daemon=%r]' % self.daemonize
)
# TODO: Get daemonize working on Windows or as a Windows Server.
if self.daemonize:
if os.name=='posix':
daemonize()
dc = ioloop.DelayedCallback(self.start_engines, 0, self.loop)
dc.start()
# Now write the new pid file AFTER our new forked pid is active.
# self.write_pid_file()
try:
self.loop.start()
except KeyboardInterrupt:
pass
except zmq.ZMQError as e:
if e.errno == errno.EINTR:
pass
else:
raise
start_aliases = {}
start_aliases.update(engine_aliases)
start_aliases.update(dict(
delay='IPClusterStart.delay',
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r4115 controller = 'IPClusterStart.controller_launcher_class',
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r3986 ))
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r4214 start_aliases['clean-logs'] = 'IPClusterStart.clean_logs'
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r3986
class IPClusterStart(IPClusterEngines):
name = u'ipcluster'
description = start_help
Brian Granger
More work on adding examples to help strings.
r4216 examples = _start_examples
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ipcluster implemented with new subcommands
r3986 default_log_level = logging.INFO
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update parallel apps to use ProfileDir
r3992 auto_create = Bool(True, config=True,
help="whether to create the profile_dir if it doesn't exist")
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ipcluster implemented with new subcommands
r3986 classes = List()
def _classes_default(self,):
from IPython.parallel.apps import launcher
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default config files are automatically generated...
r4025 return [ProfileDir] + [IPClusterEngines] + launcher.all_launchers
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r4872
clean_logs = Bool(True, config=True,
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ipcluster implemented with new subcommands
r3986 help="whether to cleanup old logs before starting")
delay = CFloat(1., config=True,
help="delay (in s) between starting the controller and the engines")
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add deprecation warning for renamed engine/controller_launcher config...
r5182 controller_launcher = Any(config=True, help="Deprecated, use controller_launcher_class")
def _controller_launcher_changed(self, name, old, new):
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Replace references to unicode and basestring
r13353 if isinstance(new, string_types):
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add deprecation warning for renamed engine/controller_launcher config...
r5182 # old 0.11-style config
self.log.warn("WARNING: %s.controller_launcher is deprecated as of 0.12,"
" use controller_launcher_class" % self.__class__.__name__)
self.controller_launcher_class = new
Thomas Kluyver
Use DottedObjectName traits in zmq and parallel modules.
r4055 controller_launcher_class = DottedObjectName('LocalControllerLauncher',
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ipcluster implemented with new subcommands
r3986 config=True,
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fix helep typo in ipcluster...
r5069 help="""The class for launching a Controller. Change this value if you want
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r5696 your controller to also be launched by a batch system, such as PBS,SGE,MPI,etc.
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command-line pass...
r4247 Each launcher class has its own set of configuration options, for making sure
it will work in your environment.
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rename MPIExecLaunchers to MPILaunchers...
r5696
Note that using a batch launcher for the controller *does not* put it
in the same batch job as the engines, so they will still start separately.
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rename MPIExecLaunchers to MPILaunchers...
r5696 IPython's bundled examples include:
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rename MPIExecLaunchers to MPILaunchers...
r5696 Local : start engines locally as subprocesses
MPI : use mpiexec to launch the controller in an MPI universe
PBS : use PBS (qsub) to submit the controller to a batch queue
SGE : use SGE (qsub) to submit the controller to a batch queue
LSF : use LSF (bsub) to submit the controller to a batch queue
James Booth
rename Condor -> HTCondor in all instances
r11004 HTCondor : use HTCondor to submit the controller to a batch queue
MinRK
rename MPIExecLaunchers to MPILaunchers...
r5696 SSH : use SSH to start the controller
WindowsHPC : use Windows HPC
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expand engine/controller_launcher_class helpstring and docs...
r5183
If you are using one of IPython's builtin launchers, you can specify just the
prefix, e.g:
c.IPClusterStart.controller_launcher_class = 'SSH'
or:
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r5696 ipcluster start --controller=MPI
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r5183
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command-line pass...
r4247 """
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ipcluster implemented with new subcommands
r3986 )
reset = Bool(False, config=True,
help="Whether to reset config files as part of '--create'."
)
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ipcluster implemented with new subcommands
r3986 # flags = Dict(flags)
aliases = Dict(start_aliases)
def init_launchers(self):
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r4851 self.controller_launcher = self.build_launcher(self.controller_launcher_class, 'Controller')
self.engine_launcher = self.build_launcher(self.engine_launcher_class, 'EngineSet')
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add early shutdown detection, and public-ip message to ipcluster/ipengine...
r5205
def engines_stopped(self, r):
"""prevent parent.engines_stopped from stopping everything on engine shutdown"""
pass
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ipcluster implemented with new subcommands
r3986 def start_controller(self):
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ipcluster logging adjustments...
r5754 self.log.info("Starting Controller with %s", self.controller_launcher_class)
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use DummyIPClusterStart to load config in notebook ClusterManager...
r6202 self.controller_launcher.on_stop(self.stop_launchers)
chapmanb
Provide logging messages in ipcluster log when engine or controllers fail to start (chapmanb/bcbio-nextgen#298
r15294 try:
self.controller_launcher.start()
except:
self.log.exception("Controller start failed")
raise
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ipcluster implemented with new subcommands
r3986 def stop_controller(self):
# self.log.info("In stop_controller")
if self.controller_launcher and self.controller_launcher.running:
return self.controller_launcher.stop()
def stop_launchers(self, r=None):
if not self._stopping:
self.stop_controller()
super(IPClusterStart, self).stop_launchers()
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r3605
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ipcluster implemented with new subcommands
r3986 def start(self):
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r3605 """Start the app for the start subcommand."""
# First see if the cluster is already running
try:
pid = self.get_pid_from_file()
except PIDFileError:
pass
else:
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add check_pid, and handle stale PID info in ipcluster....
r3846 if self.check_pid(pid):
self.log.critical(
'Cluster is already running with [pid=%s]. '
'use "ipcluster stop" to stop the cluster.' % pid
)
# Here I exit with a unusual exit status that other processes
# can watch for to learn how I existed.
self.exit(ALREADY_STARTED)
else:
self.remove_pid_file()
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r3605
# Now log and daemonize
self.log.info(
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r3985 'Starting ipcluster with [daemon=%r]' % self.daemonize
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r3605 )
# TODO: Get daemonize working on Windows or as a Windows Server.
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r3985 if self.daemonize:
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r3605 if os.name=='posix':
daemonize()
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ipcluster implemented with new subcommands
r3986 dc = ioloop.DelayedCallback(self.start_controller, 0, self.loop)
dc.start()
dc = ioloop.DelayedCallback(self.start_engines, 1000*self.delay, self.loop)
dc.start()
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r3605 # Now write the new pid file AFTER our new forked pid is active.
self.write_pid_file()
try:
self.loop.start()
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dependency tweaks + dependency/scheduler docs
r3624 except KeyboardInterrupt:
pass
except zmq.ZMQError as e:
if e.errno == errno.EINTR:
pass
else:
raise
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add check_pid, and handle stale PID info in ipcluster....
r3846 finally:
self.remove_pid_file()
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adapt kernel's ipcluster and Launchers to newparallel
r3605
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ipcluster implemented with new subcommands
r3986 base='IPython.parallel.apps.ipclusterapp.IPCluster'
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add ipcluster engines; fix ssh process shutdown
r3615
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base IPClusterApp inherits from BaseIPythonApp...
r10940 class IPClusterApp(BaseIPythonApplication):
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ipcluster implemented with new subcommands
r3986 name = u'ipcluster'
description = _description
Brian Granger
More work on adding examples to help strings.
r4216 examples = _main_examples
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default config files are automatically generated...
r4025 subcommands = {
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ipcluster implemented with new subcommands
r3986 'start' : (base+'Start', start_help),
'stop' : (base+'Stop', stop_help),
'engines' : (base+'Engines', engines_help),
}
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r4872
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ipcluster implemented with new subcommands
r3986 # no aliases or flags for parent App
aliases = Dict()
flags = Dict()
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ipcluster implemented with new subcommands
r3986 def start(self):
if self.subapp is None:
Thomas Kluyver
Convert print statements to print function calls...
r13348 print("No subcommand specified. Must specify one of: %s"%(self.subcommands.keys()))
print()
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`ipython profile` prints profile help...
r4026 self.print_description()
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ipcluster implemented with new subcommands
r3986 self.print_subcommands()
self.exit(1)
else:
return self.subapp.start()
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adapt kernel's ipcluster and Launchers to newparallel
r3605
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Application.launch_instance...
r11176 launch_new_instance = IPClusterApp.launch_instance
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adapt kernel's ipcluster and Launchers to newparallel
r3605
if __name__ == '__main__':
launch_new_instance()