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Allow '.', '+.', '+', '-.', and '-' even though without numbers, they cannot be parsed.

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execution.py
1314 lines | 49.3 KiB | text/x-python | PythonLexer
Jan Schulz
Print a real "ยตs" instead of "us"...
r9428 # -*- coding: utf-8 -*-
Fernando Perez
Create core.magics.execution according to new API.
r6963 """Implementation of execution-related magic functions.
"""
Thomas Kluyver
Convert print statements to print function calls...
r13348 from __future__ import print_function
Fernando Perez
Create core.magics.execution according to new API.
r6963 #-----------------------------------------------------------------------------
# Copyright (c) 2012 The IPython Development Team.
#
# Distributed under the terms of the Modified BSD License.
#
# The full license is in the file COPYING.txt, distributed with this software.
#-----------------------------------------------------------------------------
#-----------------------------------------------------------------------------
# Imports
#-----------------------------------------------------------------------------
# Stdlib
Thomas Kluyver
Update %timeit magic to use AST transformations
r8480 import ast
Fernando Perez
Create core.magics.execution according to new API.
r6963 import bdb
import os
import sys
import time
MinRK
allow restart in `%run -d`...
r13540 from pdb import Restart
Fernando Perez
Create core.magics.execution according to new API.
r6963
# cProfile was added in Python2.5
try:
import cProfile as profile
import pstats
except ImportError:
# profile isn't bundled by default in Debian for license reasons
try:
import profile, pstats
except ImportError:
profile = pstats = None
# Our own packages
from IPython.core import debugger, oinspect
MinRK
add %%capture cell magic
r7325 from IPython.core import magic_arguments
Fernando Perez
Create core.magics.execution according to new API.
r6963 from IPython.core import page
from IPython.core.error import UsageError
from IPython.core.macro import Macro
MinRK
add %%capture cell magic
r7325 from IPython.core.magic import (Magics, magics_class, line_magic, cell_magic,
Fernando Perez
Implement %%timeit as a cell level magic.
r7007 line_cell_magic, on_off, needs_local_scope)
Fernando Perez
Create core.magics.execution according to new API.
r6963 from IPython.testing.skipdoctest import skip_doctest
from IPython.utils import py3compat
Thomas Kluyver
Use StringIO.StringIO on Python 2....
r13366 from IPython.utils.py3compat import builtin_mod, iteritems, PY3
Bradley M. Froehle
Better handling of `__file__` when running scripts....
r8529 from IPython.utils.contexts import preserve_keys
MinRK
add %%capture cell magic
r7325 from IPython.utils.io import capture_output
Fernando Perez
Create core.magics.execution according to new API.
r6963 from IPython.utils.ipstruct import Struct
from IPython.utils.module_paths import find_mod
Takafumi Arakaki
Rename globlist to shellglob
r8067 from IPython.utils.path import get_py_filename, unquote_filename, shellglob
Fernando Perez
Create core.magics.execution according to new API.
r6963 from IPython.utils.timing import clock, clock2
from IPython.utils.warn import warn, error
Thomas Kluyver
Use StringIO.StringIO on Python 2....
r13366 if PY3:
from io import StringIO
else:
from StringIO import StringIO
Takafumi Arakaki
Add -g option to %run to glob expand arguments
r7900
Fernando Perez
Create core.magics.execution according to new API.
r6963 #-----------------------------------------------------------------------------
# Magic implementation classes
#-----------------------------------------------------------------------------
Matthias BUSSONNIER
make timeit optionally return an object...
r12628
class TimeitResult(object):
"""
Object returned by the timeit magic with info about the run.
Contain the following attributes :
loops: (int) number of loop done per measurement
repeat: (int) number of time the mesurement has been repeated
best: (float) best execusion time / number
all_runs: (list of float) execusion time of each run (in s)
compile_time: (float) time of statement compilation (s)
"""
def __init__(self, loops, repeat, best, all_runs, compile_time, precision):
self.loops = loops
self.repeat = repeat
self.best = best
self.all_runs = all_runs
self.compile_time = compile_time
self._precision = precision
def _repr_pretty_(self, p , cycle):
unic = u"%d loops, best of %d: %s per loop" % (self.loops, self.repeat,
_format_time(self.best, self._precision))
p.text(u'<TimeitResult : '+unic+u'>')
Thomas Kluyver
Fixes to restore Python 2 support
r13365 class TimeitTemplateFiller(ast.NodeTransformer):
Thomas Kluyver
Update docstring for TimeitTemplateFiller
r13403 """Fill in the AST template for timing execution.
This is quite closely tied to the template definition, which is in
:meth:`ExecutionMagics.timeit`.
"""
Thomas Kluyver
Fixes to restore Python 2 support
r13365 def __init__(self, ast_setup, ast_stmt):
self.ast_setup = ast_setup
self.ast_stmt = ast_stmt
def visit_FunctionDef(self, node):
"Fill in the setup statement"
self.generic_visit(node)
if node.name == "inner":
node.body[:1] = self.ast_setup.body
return node
def visit_For(self, node):
"Fill in the statement to be timed"
if getattr(getattr(node.body[0], 'value', None), 'id', None) == 'stmt':
node.body = self.ast_stmt.body
return node
Matthias BUSSONNIER
make timeit optionally return an object...
r12628
Fernando Perez
Renamed @register_magics to @magics_class to avoid confusion....
r6973 @magics_class
Fernando Perez
Create core.magics.execution according to new API.
r6963 class ExecutionMagics(Magics):
"""Magics related to code execution, debugging, profiling, etc.
"""
def __init__(self, shell):
super(ExecutionMagics, self).__init__(shell)
if profile is None:
self.prun = self.profile_missing_notice
# Default execution function used to actually run user code.
self.default_runner = None
def profile_missing_notice(self, *args, **kwargs):
error("""\
The profile module could not be found. It has been removed from the standard
python packages because of its non-free license. To use profiling, install the
python-profiler package from non-free.""")
@skip_doctest
Fernando Perez
Implement %%prun as a cell magic too.
r7008 @line_cell_magic
Takafumi Arakaki
Add ExecutionMagics._run_with_profiler
r10011 def prun(self, parameter_s='', cell=None):
Fernando Perez
Create core.magics.execution according to new API.
r6963
"""Run a statement through the python code profiler.
Fernando Perez
Implement %%prun as a cell magic too.
r7008 Usage, in line mode:
Fernando Perez
Create core.magics.execution according to new API.
r6963 %prun [options] statement
Fernando Perez
Implement %%prun as a cell magic too.
r7008 Usage, in cell mode:
%%prun [options] [statement]
code...
code...
In cell mode, the additional code lines are appended to the (possibly
empty) statement in the first line. Cell mode allows you to easily
profile multiline blocks without having to put them in a separate
function.
Takeshi Kanmae
Fix a breakpoint bug
r9147
Fernando Perez
Create core.magics.execution according to new API.
r6963 The given statement (which doesn't require quote marks) is run via the
python profiler in a manner similar to the profile.run() function.
Namespaces are internally managed to work correctly; profile.run
cannot be used in IPython because it makes certain assumptions about
namespaces which do not hold under IPython.
Options:
Thomas Kluyver
Improvements to docs formatting.
r12553 -l <limit>
you can place restrictions on what or how much of the
profile gets printed. The limit value can be:
* A string: only information for function names containing this string
is printed.
* An integer: only these many lines are printed.
* A float (between 0 and 1): this fraction of the report is printed
(for example, use a limit of 0.4 to see the topmost 40% only).
You can combine several limits with repeated use of the option. For
example, ``-l __init__ -l 5`` will print only the topmost 5 lines of
information about class constructors.
-r
return the pstats.Stats object generated by the profiling. This
object has all the information about the profile in it, and you can
later use it for further analysis or in other functions.
-s <key>
sort profile by given key. You can provide more than one key
by using the option several times: '-s key1 -s key2 -s key3...'. The
default sorting key is 'time'.
The following is copied verbatim from the profile documentation
referenced below:
When more than one key is provided, additional keys are used as
secondary criteria when the there is equality in all keys selected
before them.
Abbreviations can be used for any key names, as long as the
abbreviation is unambiguous. The following are the keys currently
defined:
============ =====================
Valid Arg Meaning
============ =====================
"calls" call count
"cumulative" cumulative time
"file" file name
"module" file name
"pcalls" primitive call count
"line" line number
"name" function name
"nfl" name/file/line
"stdname" standard name
"time" internal time
============ =====================
Note that all sorts on statistics are in descending order (placing
most time consuming items first), where as name, file, and line number
searches are in ascending order (i.e., alphabetical). The subtle
distinction between "nfl" and "stdname" is that the standard name is a
sort of the name as printed, which means that the embedded line
numbers get compared in an odd way. For example, lines 3, 20, and 40
would (if the file names were the same) appear in the string order
"20" "3" and "40". In contrast, "nfl" does a numeric compare of the
line numbers. In fact, sort_stats("nfl") is the same as
sort_stats("name", "file", "line").
-T <filename>
save profile results as shown on screen to a text
file. The profile is still shown on screen.
-D <filename>
save (via dump_stats) profile statistics to given
filename. This data is in a format understood by the pstats module, and
is generated by a call to the dump_stats() method of profile
objects. The profile is still shown on screen.
-q
suppress output to the pager. Best used with -T and/or -D above.
Fernando Perez
Create core.magics.execution according to new API.
r6963
If you want to run complete programs under the profiler's control, use
Thomas Kluyver
Improvements to docs formatting.
r12553 ``%run -p [prof_opts] filename.py [args to program]`` where prof_opts
Fernando Perez
Create core.magics.execution according to new API.
r6963 contains profiler specific options as described here.
You can read the complete documentation for the profile module with::
In [1]: import profile; profile.help()
"""
Takafumi Arakaki
Refactor ExecutionMagics._run_with_profiler
r10012 opts, arg_str = self.parse_options(parameter_s, 'D:l:rs:T:q',
list_all=True, posix=False)
if cell is not None:
arg_str += '\n' + cell
Jason Grout
Transform code before %prun/%%prun runs
r12153 arg_str = self.shell.input_splitter.transform_cell(arg_str)
Takafumi Arakaki
Refactor ExecutionMagics._run_with_profiler
r10012 return self._run_with_profiler(arg_str, opts, self.shell.user_ns)
Fernando Perez
Create core.magics.execution according to new API.
r6963
Takafumi Arakaki
Rename ExecutionMagics._run_with_profiler argument
r10013 def _run_with_profiler(self, code, opts, namespace):
Takafumi Arakaki
Document ExecutionMagics._run_with_profiler
r10014 """
Run `code` with profiler. Used by ``%prun`` and ``%run -p``.
Parameters
----------
code : str
Code to be executed.
opts : Struct
Options parsed by `self.parse_options`.
namespace : dict
A dictionary for Python namespace (e.g., `self.shell.user_ns`).
"""
Fernando Perez
Create core.magics.execution according to new API.
r6963
Takafumi Arakaki
Comment on "opts.merge" in _run_with_profiler
r10016 # Fill default values for unspecified options:
Takafumi Arakaki
Refactor ExecutionMagics._run_with_profiler
r10012 opts.merge(Struct(D=[''], l=[], s=['time'], T=['']))
Fernando Perez
Create core.magics.execution according to new API.
r6963
prof = profile.Profile()
try:
Takafumi Arakaki
Rename ExecutionMagics._run_with_profiler argument
r10013 prof = prof.runctx(code, namespace, namespace)
Fernando Perez
Create core.magics.execution according to new API.
r6963 sys_exit = ''
except SystemExit:
sys_exit = """*** SystemExit exception caught in code being profiled."""
stats = pstats.Stats(prof).strip_dirs().sort_stats(*opts.s)
lims = opts.l
if lims:
lims = [] # rebuild lims with ints/floats/strings
for lim in opts.l:
try:
lims.append(int(lim))
except ValueError:
try:
lims.append(float(lim))
except ValueError:
lims.append(lim)
# Trap output.
stdout_trap = StringIO()
Bradley M. Froehle
%prun: Restore `stats.stream` after running `print_stream`....
r7807 stats_stream = stats.stream
try:
Fernando Perez
Create core.magics.execution according to new API.
r6963 stats.stream = stdout_trap
stats.print_stats(*lims)
Bradley M. Froehle
%prun: Restore `stats.stream` after running `print_stream`....
r7807 finally:
stats.stream = stats_stream
Fernando Perez
Create core.magics.execution according to new API.
r6963
output = stdout_trap.getvalue()
output = output.rstrip()
if 'q' not in opts:
page.page(output)
Thomas Kluyver
Convert print statements to print function calls...
r13348 print(sys_exit, end=' ')
Fernando Perez
Create core.magics.execution according to new API.
r6963
dump_file = opts.D[0]
text_file = opts.T[0]
if dump_file:
dump_file = unquote_filename(dump_file)
prof.dump_stats(dump_file)
Thomas Kluyver
Convert print statements to print function calls...
r13348 print('\n*** Profile stats marshalled to file',\
repr(dump_file)+'.',sys_exit)
Fernando Perez
Create core.magics.execution according to new API.
r6963 if text_file:
text_file = unquote_filename(text_file)
pfile = open(text_file,'w')
pfile.write(output)
pfile.close()
Thomas Kluyver
Convert print statements to print function calls...
r13348 print('\n*** Profile printout saved to text file',\
repr(text_file)+'.',sys_exit)
Fernando Perez
Create core.magics.execution according to new API.
r6963
Bradley M. Froehle
2to3: Apply has_key fixer.
r7859 if 'r' in opts:
Fernando Perez
Create core.magics.execution according to new API.
r6963 return stats
else:
return None
@line_magic
def pdb(self, parameter_s=''):
"""Control the automatic calling of the pdb interactive debugger.
Call as '%pdb on', '%pdb 1', '%pdb off' or '%pdb 0'. If called without
argument it works as a toggle.
When an exception is triggered, IPython can optionally call the
interactive pdb debugger after the traceback printout. %pdb toggles
this feature on and off.
The initial state of this feature is set in your configuration
file (the option is ``InteractiveShell.pdb``).
If you want to just activate the debugger AFTER an exception has fired,
without having to type '%pdb on' and rerunning your code, you can use
the %debug magic."""
par = parameter_s.strip().lower()
if par:
try:
new_pdb = {'off':0,'0':0,'on':1,'1':1}[par]
except KeyError:
print ('Incorrect argument. Use on/1, off/0, '
'or nothing for a toggle.')
return
else:
# toggle
new_pdb = not self.shell.call_pdb
# set on the shell
self.shell.call_pdb = new_pdb
Thomas Kluyver
Convert print statements to print function calls...
r13348 print('Automatic pdb calling has been turned',on_off(new_pdb))
Fernando Perez
Create core.magics.execution according to new API.
r6963
Takafumi Arakaki
Add a mode to exec code in %debug magic
r10756 @skip_doctest
@magic_arguments.magic_arguments()
@magic_arguments.argument('--breakpoint', '-b', metavar='FILE:LINE',
help="""
Set break point at LINE in FILE.
"""
)
@magic_arguments.argument('statement', nargs='*',
help="""
Code to run in debugger.
You can omit this in cell magic mode.
"""
)
@line_cell_magic
def debug(self, line='', cell=None):
Takafumi Arakaki
Document the new usage of %debug
r10757 """Activate the interactive debugger.
Fernando Perez
Create core.magics.execution according to new API.
r6963
Takafumi Arakaki
Document the new usage of %debug
r10757 This magic command support two ways of activating debugger.
One is to activate debugger before executing code. This way, you
can set a break point, to step through the code from the point.
You can use this mode by giving statements to execute and optionally
a breakpoint.
Fernando Perez
Create core.magics.execution according to new API.
r6963
Takafumi Arakaki
Document the new usage of %debug
r10757 The other one is to activate debugger in post-mortem mode. You can
activate this mode simply running %debug without any argument.
Fernando Perez
Create core.magics.execution according to new API.
r6963 If an exception has just occurred, this lets you inspect its stack
frames interactively. Note that this will always work only on the last
traceback that occurred, so you must call this quickly after an
exception that you wish to inspect has fired, because if another one
occurs, it clobbers the previous one.
If you want IPython to automatically do this on every exception, see
the %pdb magic for more details.
"""
Takafumi Arakaki
Add a mode to exec code in %debug magic
r10756 args = magic_arguments.parse_argstring(self.debug, line)
if not (args.breakpoint or args.statement or cell):
self._debug_post_mortem()
else:
code = "\n".join(args.statement)
if cell:
code += "\n" + cell
self._debug_exec(code, args.breakpoint)
def _debug_post_mortem(self):
Fernando Perez
Create core.magics.execution according to new API.
r6963 self.shell.debugger(force=True)
Takafumi Arakaki
Add a mode to exec code in %debug magic
r10756 def _debug_exec(self, code, breakpoint):
if breakpoint:
(filename, bp_line) = breakpoint.split(':', 1)
bp_line = int(bp_line)
else:
(filename, bp_line) = (None, None)
self._run_with_debugger(code, self.shell.user_ns, filename, bp_line)
Fernando Perez
Create core.magics.execution according to new API.
r6963 @line_magic
def tb(self, s):
"""Print the last traceback with the currently active exception mode.
See %xmode for changing exception reporting modes."""
self.shell.showtraceback()
@skip_doctest
@line_magic
def run(self, parameter_s='', runner=None,
file_finder=get_py_filename):
"""Run the named file inside IPython as a program.
Thomas Kluyver
Improvements to docs formatting.
r12553 Usage::
Takafumi Arakaki
Fix %run usage line; mention -m and -e
r10053 %run [-n -i -e -G]
[( -t [-N<N>] | -d [-b<N>] | -p [profile options] )]
( -m mod | file ) [args]
Fernando Perez
Create core.magics.execution according to new API.
r6963
Parameters after the filename are passed as command-line arguments to
the program (put in sys.argv). Then, control returns to IPython's
prompt.
Thomas Kluyver
Improvements to docs formatting.
r12553 This is similar to running at a system prompt ``python file args``,
Fernando Perez
Create core.magics.execution according to new API.
r6963 but with the advantage of giving you IPython's tracebacks, and of
loading all variables into your interactive namespace for further use
(unless -p is used, see below).
The file is executed in a namespace initially consisting only of
Thomas Kluyver
Improvements to docs formatting.
r12553 ``__name__=='__main__'`` and sys.argv constructed as indicated. It thus
Fernando Perez
Create core.magics.execution according to new API.
r6963 sees its environment as if it were being run as a stand-alone program
(except for sharing global objects such as previously imported
modules). But after execution, the IPython interactive namespace gets
updated with all variables defined in the program (except for __name__
and sys.argv). This allows for very convenient loading of code for
interactive work, while giving each program a 'clean sheet' to run in.
Takafumi Arakaki
Make glob expansion default in %run magic command
r7947 Arguments are expanded using shell-like glob match. Patterns
'*', '?', '[seq]' and '[!seq]' can be used. Additionally,
tilde '~' will be expanded into user's home directory. Unlike
Takafumi Arakaki
%run needs double escape to escape glob patterns
r8120 real shells, quotation does not suppress expansions. Use
Thomas Kluyver
Improvements to docs formatting.
r12553 *two* back slashes (e.g. ``\\\\*``) to suppress expansions.
Takafumi Arakaki
%run needs double escape to escape glob patterns
r8120 To completely disable these expansions, you can use -G flag.
Takafumi Arakaki
Make glob expansion default in %run magic command
r7947
Fernando Perez
Create core.magics.execution according to new API.
r6963 Options:
Thomas Kluyver
Improvements to docs formatting.
r12553 -n
__name__ is NOT set to '__main__', but to the running file's name
without extension (as python does under import). This allows running
scripts and reloading the definitions in them without calling code
protected by an ``if __name__ == "__main__"`` clause.
-i
run the file in IPython's namespace instead of an empty one. This
is useful if you are experimenting with code written in a text editor
which depends on variables defined interactively.
-e
ignore sys.exit() calls or SystemExit exceptions in the script
being run. This is particularly useful if IPython is being used to
run unittests, which always exit with a sys.exit() call. In such
cases you are interested in the output of the test results, not in
seeing a traceback of the unittest module.
-t
print timing information at the end of the run. IPython will give
you an estimated CPU time consumption for your script, which under
Unix uses the resource module to avoid the wraparound problems of
time.clock(). Under Unix, an estimate of time spent on system tasks
is also given (for Windows platforms this is reported as 0.0).
If -t is given, an additional ``-N<N>`` option can be given, where <N>
Fernando Perez
Create core.magics.execution according to new API.
r6963 must be an integer indicating how many times you want the script to
run. The final timing report will include total and per run results.
For example (testing the script uniq_stable.py)::
In [1]: run -t uniq_stable
Thomas Kluyver
Improvements to docs formatting.
r12553 IPython CPU timings (estimated):
User : 0.19597 s.
System: 0.0 s.
Fernando Perez
Create core.magics.execution according to new API.
r6963
In [2]: run -t -N5 uniq_stable
Thomas Kluyver
Improvements to docs formatting.
r12553 IPython CPU timings (estimated):
Total runs performed: 5
Times : Total Per run
User : 0.910862 s, 0.1821724 s.
Fernando Perez
Create core.magics.execution according to new API.
r6963 System: 0.0 s, 0.0 s.
Thomas Kluyver
Improvements to docs formatting.
r12553 -d
run your program under the control of pdb, the Python debugger.
This allows you to execute your program step by step, watch variables,
etc. Internally, what IPython does is similar to calling::
Fernando Perez
Create core.magics.execution according to new API.
r6963
Thomas Kluyver
Improvements to docs formatting.
r12553 pdb.run('execfile("YOURFILENAME")')
Fernando Perez
Create core.magics.execution according to new API.
r6963
Thomas Kluyver
Improvements to docs formatting.
r12553 with a breakpoint set on line 1 of your file. You can change the line
number for this automatic breakpoint to be <N> by using the -bN option
(where N must be an integer). For example::
Fernando Perez
Create core.magics.execution according to new API.
r6963
Thomas Kluyver
Improvements to docs formatting.
r12553 %run -d -b40 myscript
Fernando Perez
Create core.magics.execution according to new API.
r6963
Thomas Kluyver
Improvements to docs formatting.
r12553 will set the first breakpoint at line 40 in myscript.py. Note that
the first breakpoint must be set on a line which actually does
something (not a comment or docstring) for it to stop execution.
Fernando Perez
Create core.magics.execution according to new API.
r6963
Thomas Kluyver
Improvements to docs formatting.
r12553 Or you can specify a breakpoint in a different file::
Owen Healy
Allow the %run magic with '-b' to specify a file....
r9052
Thomas Kluyver
Improvements to docs formatting.
r12553 %run -d -b myotherfile.py:20 myscript
Owen Healy
Allow the %run magic with '-b' to specify a file....
r9052
Thomas Kluyver
Improvements to docs formatting.
r12553 When the pdb debugger starts, you will see a (Pdb) prompt. You must
first enter 'c' (without quotes) to start execution up to the first
breakpoint.
Fernando Perez
Create core.magics.execution according to new API.
r6963
Thomas Kluyver
Improvements to docs formatting.
r12553 Entering 'help' gives information about the use of the debugger. You
can easily see pdb's full documentation with "import pdb;pdb.help()"
at a prompt.
Fernando Perez
Create core.magics.execution according to new API.
r6963
Thomas Kluyver
Improvements to docs formatting.
r12553 -p
run program under the control of the Python profiler module (which
prints a detailed report of execution times, function calls, etc).
Fernando Perez
Create core.magics.execution according to new API.
r6963
Thomas Kluyver
Improvements to docs formatting.
r12553 You can pass other options after -p which affect the behavior of the
profiler itself. See the docs for %prun for details.
Fernando Perez
Create core.magics.execution according to new API.
r6963
Thomas Kluyver
Improvements to docs formatting.
r12553 In this mode, the program's variables do NOT propagate back to the
IPython interactive namespace (because they remain in the namespace
where the profiler executes them).
Fernando Perez
Create core.magics.execution according to new API.
r6963
Thomas Kluyver
Improvements to docs formatting.
r12553 Internally this triggers a call to %prun, see its documentation for
details on the options available specifically for profiling.
Fernando Perez
Create core.magics.execution according to new API.
r6963
There is one special usage for which the text above doesn't apply:
MinRK
support notebooks in %run...
r13644 if the filename ends with .ipy[nb], the file is run as ipython script,
Fernando Perez
Create core.magics.execution according to new API.
r6963 just as if the commands were written on IPython prompt.
Thomas Kluyver
Improvements to docs formatting.
r12553 -m
specify module name to load instead of script path. Similar to
the -m option for the python interpreter. Use this option last if you
want to combine with other %run options. Unlike the python interpreter
only source modules are allowed no .pyc or .pyo files.
For example::
Fernando Perez
Create core.magics.execution according to new API.
r6963
Thomas Kluyver
Improvements to docs formatting.
r12553 %run -m example
Fernando Perez
Create core.magics.execution according to new API.
r6963
Thomas Kluyver
Improvements to docs formatting.
r12553 will run the example module.
Fernando Perez
Create core.magics.execution according to new API.
r6963
Thomas Kluyver
Improvements to docs formatting.
r12553 -G
disable shell-like glob expansion of arguments.
Takafumi Arakaki
Add -g option to %run to glob expand arguments
r7900
Fernando Perez
Create core.magics.execution according to new API.
r6963 """
# get arguments and set sys.argv for program to be run.
Takafumi Arakaki
Add -g option to %run to glob expand arguments
r7900 opts, arg_lst = self.parse_options(parameter_s,
Takafumi Arakaki
Make glob expansion default in %run magic command
r7947 'nidtN:b:pD:l:rs:T:em:G',
Fernando Perez
Create core.magics.execution according to new API.
r6963 mode='list', list_all=1)
if "m" in opts:
modulename = opts["m"][0]
modpath = find_mod(modulename)
if modpath is None:
warn('%r is not a valid modulename on sys.path'%modulename)
return
arg_lst = [modpath] + arg_lst
try:
filename = file_finder(arg_lst[0])
except IndexError:
warn('you must provide at least a filename.')
Thomas Kluyver
Convert print statements to print function calls...
r13348 print('\n%run:\n', oinspect.getdoc(self.run))
Fernando Perez
Create core.magics.execution according to new API.
r6963 return
except IOError as e:
try:
msg = str(e)
except UnicodeError:
msg = e.message
error(msg)
return
MinRK
support notebooks in %run...
r13644 if filename.lower().endswith(('.ipy', '.ipynb')):
Bradley M. Froehle
Better handling of `__file__` when running scripts....
r8529 with preserve_keys(self.shell.user_ns, '__file__'):
self.shell.user_ns['__file__'] = filename
self.shell.safe_execfile_ipy(filename)
Fernando Perez
Create core.magics.execution according to new API.
r6963 return
# Control the response to exit() calls made by the script being run
exit_ignore = 'e' in opts
# Make sure that the running script gets a proper sys.argv as if it
# were run from a system shell.
save_argv = sys.argv # save it for later restoring
Takafumi Arakaki
Make glob expansion default in %run magic command
r7947 if 'G' in opts:
args = arg_lst[1:]
else:
# tilde and glob expansion
Takafumi Arakaki
Rename globlist to shellglob
r8067 args = shellglob(map(os.path.expanduser, arg_lst[1:]))
Fernando Perez
Create core.magics.execution according to new API.
r6963
sys.argv = [filename] + args # put in the proper filename
# protect sys.argv from potential unicode strings on Python 2:
if not py3compat.PY3:
sys.argv = [ py3compat.cast_bytes(a) for a in sys.argv ]
if 'i' in opts:
# Run in user's interactive namespace
prog_ns = self.shell.user_ns
__name__save = self.shell.user_ns['__name__']
prog_ns['__name__'] = '__main__'
Thomas Kluyver
Simplify caching of modules from %run-ing scripts....
r11207 main_mod = self.shell.user_module
Thomas Kluyver
Replace FakeModule with ModuleType in InteractiveShell
r12562
# Since '%run foo' emulates 'python foo.py' at the cmd line, we must
# set the __file__ global in the script's namespace
# TK: Is this necessary in interactive mode?
prog_ns['__file__'] = filename
Fernando Perez
Create core.magics.execution according to new API.
r6963 else:
# Run in a fresh, empty namespace
if 'n' in opts:
name = os.path.splitext(os.path.basename(filename))[0]
else:
name = '__main__'
Thomas Kluyver
Simplify caching of modules from %run-ing scripts....
r11207 # The shell MUST hold a reference to prog_ns so after %run
# exits, the python deletion mechanism doesn't zero it out
# (leaving dangling references). See interactiveshell for details
Thomas Kluyver
Replace FakeModule with ModuleType in InteractiveShell
r12562 main_mod = self.shell.new_main_mod(filename, name)
Fernando Perez
Create core.magics.execution according to new API.
r6963 prog_ns = main_mod.__dict__
# pickle fix. See interactiveshell for an explanation. But we need to
# make sure that, if we overwrite __main__, we replace it at the end
main_mod_name = prog_ns['__name__']
if main_mod_name == '__main__':
restore_main = sys.modules['__main__']
else:
restore_main = False
# This needs to be undone at the end to prevent holding references to
# every single object ever created.
sys.modules[main_mod_name] = main_mod
Takafumi Arakaki
Support relative import in "%run -d -m"
r10003 if 'p' in opts or 'd' in opts:
if 'm' in opts:
code = 'run_module(modulename, prog_ns)'
code_ns = {
'run_module': self.shell.safe_run_module,
'prog_ns': prog_ns,
'modulename': modulename,
}
else:
MinRK
allow restart in `%run -d`...
r13540 if 'd' in opts:
# allow exceptions to raise in debug mode
code = 'execfile(filename, prog_ns, raise_exceptions=True)'
else:
code = 'execfile(filename, prog_ns)'
Takafumi Arakaki
Support relative import in "%run -d -m"
r10003 code_ns = {
'execfile': self.shell.safe_execfile,
'prog_ns': prog_ns,
'filename': get_py_filename(filename),
}
Fernando Perez
Create core.magics.execution according to new API.
r6963 try:
stats = None
with self.shell.readline_no_record:
if 'p' in opts:
Takafumi Arakaki
Refactor ExecutionMagics._run_with_profiler
r10012 stats = self._run_with_profiler(code, opts, code_ns)
Fernando Perez
Create core.magics.execution according to new API.
r6963 else:
if 'd' in opts:
Takafumi Arakaki
Add a mode to exec code in %debug magic
r10756 bp_file, bp_line = parse_breakpoint(
opts.get('b', ['1'])[0], filename)
Takafumi Arakaki
Refactor part for "%run -d"
r10004 self._run_with_debugger(
Takafumi Arakaki
Add a mode to exec code in %debug magic
r10756 code, code_ns, filename, bp_line, bp_file)
Fernando Perez
Create core.magics.execution according to new API.
r6963 else:
Takafumi Arakaki
Support relative import in "%run -m"
r9996 if 'm' in opts:
def run():
self.shell.safe_run_module(modulename, prog_ns)
else:
if runner is None:
runner = self.default_runner
if runner is None:
runner = self.shell.safe_execfile
def run():
runner(filename, prog_ns, prog_ns,
exit_ignore=exit_ignore)
Takafumi Arakaki
Refactor part for "%run -t"
r9995
Fernando Perez
Create core.magics.execution according to new API.
r6963 if 't' in opts:
# timed execution
try:
nruns = int(opts['N'][0])
if nruns < 1:
error('Number of runs must be >=1')
return
except (KeyError):
nruns = 1
Takafumi Arakaki
Refactor part for "%run -t"
r9995 self._run_with_timing(run, nruns)
Fernando Perez
Create core.magics.execution according to new API.
r6963 else:
# regular execution
Takafumi Arakaki
Refactor part for "%run -t"
r9995 run()
Fernando Perez
Create core.magics.execution according to new API.
r6963
if 'i' in opts:
self.shell.user_ns['__name__'] = __name__save
else:
# update IPython interactive namespace
# Some forms of read errors on the file may mean the
# __name__ key was never set; using pop we don't have to
# worry about a possible KeyError.
prog_ns.pop('__name__', None)
Bradley M. Froehle
Better handling of `__file__` when running scripts....
r8529 with preserve_keys(self.shell.user_ns, '__file__'):
self.shell.user_ns.update(prog_ns)
Fernando Perez
Create core.magics.execution according to new API.
r6963 finally:
# It's a bit of a mystery why, but __builtins__ can change from
# being a module to becoming a dict missing some key data after
# %run. As best I can see, this is NOT something IPython is doing
# at all, and similar problems have been reported before:
# http://coding.derkeiler.com/Archive/Python/comp.lang.python/2004-10/0188.html
# Since this seems to be done by the interpreter itself, the best
# we can do is to at least restore __builtins__ for the user on
# exit.
self.shell.user_ns['__builtins__'] = builtin_mod
# Ensure key global structures are restored
sys.argv = save_argv
if restore_main:
sys.modules['__main__'] = restore_main
else:
# Remove from sys.modules the reference to main_mod we'd
# added. Otherwise it will trap references to objects
# contained therein.
del sys.modules[main_mod_name]
return stats
Takafumi Arakaki
Refactor part for "%run -t"
r9995
Takafumi Arakaki
Add a mode to exec code in %debug magic
r10756 def _run_with_debugger(self, code, code_ns, filename=None,
bp_line=None, bp_file=None):
Takafumi Arakaki
Document private methods in ExecutionMagics
r10552 """
Run `code` in debugger with a break point.
Parameters
----------
code : str
Code to execute.
code_ns : dict
A namespace in which `code` is executed.
filename : str
Takafumi Arakaki
Add a mode to exec code in %debug magic
r10756 `code` is ran as if it is in `filename`.
bp_line : int, optional
Line number of the break point.
bp_file : str, optional
Takafumi Arakaki
Document private methods in ExecutionMagics
r10552 Path to the file in which break point is specified.
Takafumi Arakaki
Add a mode to exec code in %debug magic
r10756 `filename` is used if not given.
Takafumi Arakaki
Document private methods in ExecutionMagics
r10552
Raises
------
UsageError
Takafumi Arakaki
Add a mode to exec code in %debug magic
r10756 If the break point given by `bp_line` is not valid.
Takafumi Arakaki
Document private methods in ExecutionMagics
r10552
"""
Takafumi Arakaki
Refactor part for "%run -d"
r10004 deb = debugger.Pdb(self.shell.colors)
# reset Breakpoint state, which is moronically kept
# in a class
bdb.Breakpoint.next = 1
bdb.Breakpoint.bplist = {}
bdb.Breakpoint.bpbynumber = [None]
Takafumi Arakaki
Add a mode to exec code in %debug magic
r10756 if bp_line is not None:
# Set an initial breakpoint to stop execution
maxtries = 10
bp_file = bp_file or filename
checkline = deb.checkline(bp_file, bp_line)
if not checkline:
for bp in range(bp_line + 1, bp_line + maxtries + 1):
if deb.checkline(bp_file, bp):
break
else:
msg = ("\nI failed to find a valid line to set "
"a breakpoint\n"
"after trying up to line: %s.\n"
"Please set a valid breakpoint manually "
"with the -b option." % bp)
raise UsageError(msg)
# if we find a good linenumber, set the breakpoint
deb.do_break('%s:%s' % (bp_file, bp_line))
if filename:
# Mimic Pdb._runscript(...)
deb._wait_for_mainpyfile = True
deb.mainpyfile = deb.canonic(filename)
Takafumi Arakaki
Refactor part for "%run -d"
r10004
# Start file run
Thomas Kluyver
Convert print statements to print function calls...
r13348 print("NOTE: Enter 'c' at the %s prompt to continue execution." % deb.prompt)
Takafumi Arakaki
Refactor part for "%run -d"
r10004 try:
Takafumi Arakaki
Add a mode to exec code in %debug magic
r10756 if filename:
# save filename so it can be used by methods on the deb object
deb._exec_filename = filename
MinRK
allow restart in `%run -d`...
r13540 while True:
try:
deb.run(code, code_ns)
except Restart:
print("Restarting")
if filename:
deb._wait_for_mainpyfile = True
deb.mainpyfile = deb.canonic(filename)
continue
else:
break
Takafumi Arakaki
Refactor part for "%run -d"
r10004
except:
etype, value, tb = sys.exc_info()
# Skip three frames in the traceback: the %run one,
# one inside bdb.py, and the command-line typed by the
# user (run by exec in pdb itself).
self.shell.InteractiveTB(etype, value, tb, tb_offset=3)
Takafumi Arakaki
Refactor part for "%run -t"
r9995 @staticmethod
def _run_with_timing(run, nruns):
Takafumi Arakaki
Document private methods in ExecutionMagics
r10552 """
Run function `run` and print timing information.
Parameters
----------
run : callable
Any callable object which takes no argument.
nruns : int
Number of times to execute `run`.
"""
Takafumi Arakaki
Refactor part for "%run -t"
r9995 twall0 = time.time()
if nruns == 1:
t0 = clock2()
run()
t1 = clock2()
t_usr = t1[0] - t0[0]
t_sys = t1[1] - t0[1]
Thomas Kluyver
Convert print statements to print function calls...
r13348 print("\nIPython CPU timings (estimated):")
print(" User : %10.2f s." % t_usr)
print(" System : %10.2f s." % t_sys)
Takafumi Arakaki
Refactor part for "%run -t"
r9995 else:
runs = range(nruns)
t0 = clock2()
for nr in runs:
run()
t1 = clock2()
t_usr = t1[0] - t0[0]
t_sys = t1[1] - t0[1]
Thomas Kluyver
Convert print statements to print function calls...
r13348 print("\nIPython CPU timings (estimated):")
print("Total runs performed:", nruns)
print(" Times : %10s %10s" % ('Total', 'Per run'))
print(" User : %10.2f s, %10.2f s." % (t_usr, t_usr / nruns))
print(" System : %10.2f s, %10.2f s." % (t_sys, t_sys / nruns))
Takafumi Arakaki
Refactor part for "%run -t"
r9995 twall1 = time.time()
Thomas Kluyver
Convert print statements to print function calls...
r13348 print("Wall time: %10.2f s." % (twall1 - twall0))
Takafumi Arakaki
Refactor part for "%run -t"
r9995
Fernando Perez
Create core.magics.execution according to new API.
r6963 @skip_doctest
Fernando Perez
Implement %%timeit as a cell level magic.
r7007 @line_cell_magic
def timeit(self, line='', cell=None):
Fernando Perez
Create core.magics.execution according to new API.
r6963 """Time execution of a Python statement or expression
Fernando Perez
Implement %%timeit as a cell level magic.
r7007 Usage, in line mode:
Matthias BUSSONNIER
make timeit optionally return an object...
r12628 %timeit [-n<N> -r<R> [-t|-c] -q -p<P> -o] statement
Fernando Perez
Implement %%timeit as a cell level magic.
r7007 or in cell mode:
Matthias BUSSONNIER
make timeit optionally return an object...
r12628 %%timeit [-n<N> -r<R> [-t|-c] -q -p<P> -o] setup_code
Fernando Perez
Implement %%timeit as a cell level magic.
r7007 code
code...
Fernando Perez
Create core.magics.execution according to new API.
r6963
Time execution of a Python statement or expression using the timeit
Fernando Perez
Implement %%timeit as a cell level magic.
r7007 module. This function can be used both as a line and cell magic:
- In line mode you can time a single-line statement (though multiple
ones can be chained with using semicolons).
- In cell mode, the statement in the first line is used as setup code
(executed but not timed) and the body of the cell is timed. The cell
body has access to any variables created in the setup code.
Fernando Perez
Create core.magics.execution according to new API.
r6963
Options:
-n<N>: execute the given statement <N> times in a loop. If this value
is not given, a fitting value is chosen.
-r<R>: repeat the loop iteration <R> times and take the best result.
Default: 3
-t: use time.time to measure the time, which is the default on Unix.
This function measures wall time.
-c: use time.clock to measure the time, which is the default on
Windows and measures wall time. On Unix, resource.getrusage is used
instead and returns the CPU user time.
-p<P>: use a precision of <P> digits to display the timing result.
Default: 3
Matthias BUSSONNIER
make timeit optionally return an object...
r12628 -q: Quiet, do not print result.
-o: return a TimeitResult that can be stored in a variable to inspect
the result in more details.
Fernando Perez
Create core.magics.execution according to new API.
r6963
Examples
--------
::
In [1]: %timeit pass
10000000 loops, best of 3: 53.3 ns per loop
In [2]: u = None
In [3]: %timeit u is None
10000000 loops, best of 3: 184 ns per loop
In [4]: %timeit -r 4 u == None
1000000 loops, best of 4: 242 ns per loop
In [5]: import time
In [6]: %timeit -n1 time.sleep(2)
1 loops, best of 3: 2 s per loop
The times reported by %timeit will be slightly higher than those
reported by the timeit.py script when variables are accessed. This is
due to the fact that %timeit executes the statement in the namespace
of the shell, compared with timeit.py, which uses a single setup
statement to import function or create variables. Generally, the bias
does not matter as long as results from timeit.py are not mixed with
those from %timeit."""
import timeit
Matthias BUSSONNIER
make timeit optionally return an object...
r12628 opts, stmt = self.parse_options(line,'n:r:tcp:qo',
Fernando Perez
Create core.magics.execution according to new API.
r6963 posix=False, strict=False)
Tony S Yu
Allow cell mode timeit without setup code.
r7030 if stmt == "" and cell is None:
Fernando Perez
Create core.magics.execution according to new API.
r6963 return
Robert Marchman
warning for %%timeit empty cell...
r9463
Fernando Perez
Create core.magics.execution according to new API.
r6963 timefunc = timeit.default_timer
number = int(getattr(opts, "n", 0))
repeat = int(getattr(opts, "r", timeit.default_repeat))
precision = int(getattr(opts, "p", 3))
Matthias BUSSONNIER
make timeit optionally return an object...
r12628 quiet = 'q' in opts
return_result = 'o' in opts
Fernando Perez
Create core.magics.execution according to new API.
r6963 if hasattr(opts, "t"):
timefunc = time.time
if hasattr(opts, "c"):
timefunc = clock
timer = timeit.Timer(timer=timefunc)
# this code has tight coupling to the inner workings of timeit.Timer,
# but is there a better way to achieve that the code stmt has access
# to the shell namespace?
Fernando Perez
Allow %/%%timeit to process IPython syntax....
r7489 transform = self.shell.input_splitter.transform_cell
Takeshi Kanmae
Fix a breakpoint bug
r9147
Fernando Perez
Implement %%timeit as a cell level magic.
r7007 if cell is None:
# called as line magic
Thomas Kluyver
Update %timeit magic to use AST transformations
r8480 ast_setup = ast.parse("pass")
ast_stmt = ast.parse(transform(stmt))
Thomas Kluyver
timeit.template uses new-style string formatting from Python 3.3
r7021 else:
Thomas Kluyver
Update %timeit magic to use AST transformations
r8480 ast_setup = ast.parse(transform(stmt))
ast_stmt = ast.parse(transform(cell))
Takeshi Kanmae
Fix a breakpoint bug
r9147
Thomas Kluyver
Update %timeit magic to use AST transformations
r8480 ast_setup = self.shell.transform_ast(ast_setup)
ast_stmt = self.shell.transform_ast(ast_stmt)
Takeshi Kanmae
Fix a breakpoint bug
r9147
Thomas Kluyver
Update %timeit magic to use AST transformations
r8480 # This codestring is taken from timeit.template - we fill it in as an
# AST, so that we can apply our AST transformations to the user code
# without affecting the timing code.
timeit_ast_template = ast.parse('def inner(_it, _timer):\n'
' setup\n'
' _t0 = _timer()\n'
' for _i in _it:\n'
' stmt\n'
' _t1 = _timer()\n'
' return _t1 - _t0\n')
Takeshi Kanmae
Fix a breakpoint bug
r9147
Thomas Kluyver
Fixes to restore Python 2 support
r13365 timeit_ast = TimeitTemplateFiller(ast_setup, ast_stmt).visit(timeit_ast_template)
Thomas Kluyver
Update %timeit magic to use AST transformations
r8480 timeit_ast = ast.fix_missing_locations(timeit_ast)
Thomas Kluyver
timeit.template uses new-style string formatting from Python 3.3
r7021
Fernando Perez
Create core.magics.execution according to new API.
r6963 # Track compilation time so it can be reported if too long
# Minimum time above which compilation time will be reported
tc_min = 0.1
t0 = clock()
Thomas Kluyver
Update %timeit magic to use AST transformations
r8480 code = compile(timeit_ast, "<magic-timeit>", "exec")
Fernando Perez
Create core.magics.execution according to new API.
r6963 tc = clock()-t0
ns = {}
Thomas Kluyver
Fix exec statements for Py 3...
r13350 exec(code, self.shell.user_ns, ns)
Fernando Perez
Create core.magics.execution according to new API.
r6963 timer.inner = ns["inner"]
if number == 0:
# determine number so that 0.2 <= total time < 2.0
number = 1
Abhinav Upadhyay
Remove unused loop variable.
r12859 for _ in range(1, 10):
Fernando Perez
Create core.magics.execution according to new API.
r6963 if timer.timeit(number) >= 0.2:
break
number *= 10
Matthias BUSSONNIER
make timeit optionally return an object...
r12628 all_runs = timer.repeat(repeat, number)
best = min(all_runs) / number
if not quiet :
Thomas Kluyver
Convert print statements to print function calls...
r13348 print(u"%d loops, best of %d: %s per loop" % (number, repeat,
_format_time(best, precision)))
Matthias BUSSONNIER
make timeit optionally return an object...
r12628 if tc > tc_min:
Thomas Kluyver
Convert print statements to print function calls...
r13348 print("Compiler time: %.2f s" % tc)
Matthias BUSSONNIER
make timeit optionally return an object...
r12628 if return_result:
return TimeitResult(number, repeat, best, all_runs, tc, precision)
Fernando Perez
Create core.magics.execution according to new API.
r6963
@skip_doctest
@needs_local_scope
Jan Schulz
time magic: make it usable as cell magic...
r9311 @line_cell_magic
def time(self,line='', cell=None, local_ns=None):
Fernando Perez
Create core.magics.execution according to new API.
r6963 """Time execution of a Python statement or expression.
The CPU and wall clock times are printed, and the value of the
expression (if any) is returned. Note that under Win32, system time
is always reported as 0, since it can not be measured.
Jan Schulz
time magic: make it usable as cell magic...
r9311
This function can be used both as a line and cell magic:
- In line mode you can time a single-line statement (though multiple
ones can be chained with using semicolons).
Fernando Perez
Create core.magics.execution according to new API.
r6963
Jan Schulz
time magic: make it usable as cell magic...
r9311 - In cell mode, you can time the cell body (a directly
following statement raises an error).
Fernando Perez
Create core.magics.execution according to new API.
r6963
Jan Schulz
time magic: make it usable as cell magic...
r9311 This function provides very basic timing functionality. Use the timeit
magic for more controll over the measurement.
Fernando Perez
Create core.magics.execution according to new API.
r6963
Examples
--------
::
Jan Schulz
time magic: make it usable as cell magic...
r9311 In [1]: %time 2**128
Fernando Perez
Create core.magics.execution according to new API.
r6963 CPU times: user 0.00 s, sys: 0.00 s, total: 0.00 s
Wall time: 0.00
Out[1]: 340282366920938463463374607431768211456L
In [2]: n = 1000000
Jan Schulz
time magic: make it usable as cell magic...
r9311 In [3]: %time sum(range(n))
Fernando Perez
Create core.magics.execution according to new API.
r6963 CPU times: user 1.20 s, sys: 0.05 s, total: 1.25 s
Wall time: 1.37
Out[3]: 499999500000L
Jan Schulz
time magic: make it usable as cell magic...
r9311 In [4]: %time print 'hello world'
Fernando Perez
Create core.magics.execution according to new API.
r6963 hello world
CPU times: user 0.00 s, sys: 0.00 s, total: 0.00 s
Wall time: 0.00
Note that the time needed by Python to compile the given expression
will be reported if it is more than 0.1s. In this example, the
actual exponentiation is done by Python at compilation time, so while
the expression can take a noticeable amount of time to compute, that
time is purely due to the compilation:
Jan Schulz
time magic: make it usable as cell magic...
r9311 In [5]: %time 3**9999;
Fernando Perez
Create core.magics.execution according to new API.
r6963 CPU times: user 0.00 s, sys: 0.00 s, total: 0.00 s
Wall time: 0.00 s
Jan Schulz
time magic: make it usable as cell magic...
r9311 In [6]: %time 3**999999;
Fernando Perez
Create core.magics.execution according to new API.
r6963 CPU times: user 0.00 s, sys: 0.00 s, total: 0.00 s
Wall time: 0.00 s
Compiler : 0.78 s
"""
# fail immediately if the given expression can't be compiled
Jan Schulz
time magic: make it usable as cell magic...
r9311
if line and cell:
raise UsageError("Can't use statement directly after '%%time'!")
if cell:
Thomas Kluyver
Use new input transformation API in %%time...
r10672 expr = self.shell.input_transformer_manager.transform_cell(cell)
Jan Schulz
time magic: make it usable as cell magic...
r9311 else:
Thomas Kluyver
Use new input transformation API in %%time...
r10672 expr = self.shell.input_transformer_manager.transform_cell(line)
Takeshi Kanmae
Fix a breakpoint bug
r9147
Thomas Kluyver
Make %time magic work with AST transformations
r8486 # Minimum time above which parse time will be reported
tp_min = 0.1
Takeshi Kanmae
Fix a breakpoint bug
r9147
Thomas Kluyver
Make %time magic work with AST transformations
r8486 t0 = clock()
expr_ast = ast.parse(expr)
tp = clock()-t0
Takeshi Kanmae
Fix a breakpoint bug
r9147
Thomas Kluyver
Make %time magic work with AST transformations
r8486 # Apply AST transformations
expr_ast = self.shell.transform_ast(expr_ast)
Fernando Perez
Create core.magics.execution according to new API.
r6963
# Minimum time above which compilation time will be reported
tc_min = 0.1
Thomas Kluyver
Make %time magic work with AST transformations
r8486 if len(expr_ast.body)==1 and isinstance(expr_ast.body[0], ast.Expr):
Fernando Perez
Create core.magics.execution according to new API.
r6963 mode = 'eval'
Thomas Kluyver
Make %time magic work with AST transformations
r8486 source = '<timed eval>'
expr_ast = ast.Expression(expr_ast.body[0].value)
else:
Fernando Perez
Create core.magics.execution according to new API.
r6963 mode = 'exec'
Thomas Kluyver
Make %time magic work with AST transformations
r8486 source = '<timed exec>'
t0 = clock()
code = compile(expr_ast, source, mode)
tc = clock()-t0
Takeshi Kanmae
Fix a breakpoint bug
r9147
Fernando Perez
Create core.magics.execution according to new API.
r6963 # skew measurement as little as possible
glob = self.shell.user_ns
wtime = time.time
# time execution
wall_st = wtime()
if mode=='eval':
st = clock2()
Guy Haskin Fernald
Added functionality to %R and %octave magics so that -i first looks in local...
r8262 out = eval(code, glob, local_ns)
Fernando Perez
Create core.magics.execution according to new API.
r6963 end = clock2()
else:
st = clock2()
Thomas Kluyver
Fix exec statements for Py 3...
r13350 exec(code, glob, local_ns)
Fernando Perez
Create core.magics.execution according to new API.
r6963 end = clock2()
out = None
wall_end = wtime()
# Compute actual times and report
wall_time = wall_end-wall_st
cpu_user = end[0]-st[0]
cpu_sys = end[1]-st[1]
cpu_tot = cpu_user+cpu_sys
Jan Schulz
time magic: shorten unnecessary output on windows...
r9728 # On windows cpu_sys is always zero, so no new information to the next print
if sys.platform != 'win32':
Thomas Kluyver
Convert print statements to print function calls...
r13348 print("CPU times: user %s, sys: %s, total: %s" % \
(_format_time(cpu_user),_format_time(cpu_sys),_format_time(cpu_tot)))
print("Wall time: %s" % _format_time(wall_time))
Fernando Perez
Create core.magics.execution according to new API.
r6963 if tc > tc_min:
Thomas Kluyver
Convert print statements to print function calls...
r13348 print("Compiler : %s" % _format_time(tc))
Thomas Kluyver
Make %time magic work with AST transformations
r8486 if tp > tp_min:
Thomas Kluyver
Convert print statements to print function calls...
r13348 print("Parser : %s" % _format_time(tp))
Fernando Perez
Create core.magics.execution according to new API.
r6963 return out
@skip_doctest
@line_magic
def macro(self, parameter_s=''):
"""Define a macro for future re-execution. It accepts ranges of history,
filenames or string objects.
Usage:\\
%macro [options] name n1-n2 n3-n4 ... n5 .. n6 ...
Options:
-r: use 'raw' input. By default, the 'processed' history is used,
so that magics are loaded in their transformed version to valid
Jeff Knisley
Add -q option (suppress print upon creation) to %macro...
r10962 Python. If this option is given, the raw input as typed at the
Fernando Perez
Create core.magics.execution according to new API.
r6963 command line is used instead.
Jeff Knisley
Add -q option (suppress print upon creation) to %macro...
r10962
-q: quiet macro definition. By default, a tag line is printed
to indicate the macro has been created, and then the contents of
the macro are printed. If this option is given, then no printout
is produced once the macro is created.
Fernando Perez
Create core.magics.execution according to new API.
r6963
This will define a global variable called `name` which is a string
made of joining the slices and lines you specify (n1,n2,... numbers
above) from your input history into a single string. This variable
acts like an automatic function which re-executes those lines as if
you had typed them. You just type 'name' at the prompt and the code
executes.
The syntax for indicating input ranges is described in %history.
Note: as a 'hidden' feature, you can also use traditional python slice
notation, where N:M means numbers N through M-1.
Jeff Knisley
Add -q option (suppress print upon creation) to %macro...
r10962 For example, if your history contains (print using %hist -n )::
Fernando Perez
Create core.magics.execution according to new API.
r6963
44: x=1
45: y=3
46: z=x+y
47: print x
48: a=5
49: print 'x',x,'y',y
you can create a macro with lines 44 through 47 (included) and line 49
called my_macro with::
In [55]: %macro my_macro 44-47 49
Now, typing `my_macro` (without quotes) will re-execute all this code
in one pass.
You don't need to give the line-numbers in order, and any given line
number can appear multiple times. You can assemble macros with any
lines from your input history in any order.
The macro is a simple object which holds its value in an attribute,
but IPython's display system checks for macros and executes them as
code instead of printing them when you type their name.
You can view a macro's contents by explicitly printing it with::
print macro_name
"""
Jeff Knisley
Add -q option (suppress print upon creation) to %macro...
r10962 opts,args = self.parse_options(parameter_s,'rq',mode='list')
Fernando Perez
Create core.magics.execution according to new API.
r6963 if not args: # List existing macros
Thomas Kluyver
Fix references to dict.iteritems and dict.itervalues
r13361 return sorted(k for k,v in iteritems(self.shell.user_ns) if\
Fernando Perez
Create core.magics.execution according to new API.
r6963 isinstance(v, Macro))
if len(args) == 1:
raise UsageError(
"%macro insufficient args; usage '%macro name n1-n2 n3-4...")
name, codefrom = args[0], " ".join(args[1:])
#print 'rng',ranges # dbg
try:
lines = self.shell.find_user_code(codefrom, 'r' in opts)
except (ValueError, TypeError) as e:
Thomas Kluyver
Convert print statements to print function calls...
r13348 print(e.args[0])
Fernando Perez
Create core.magics.execution according to new API.
r6963 return
macro = Macro(lines)
self.shell.define_macro(name, macro)
Jeff Knisley
Add -q option (suppress print upon creation) to %macro...
r10962 if not ( 'q' in opts) :
Thomas Kluyver
Convert print statements to print function calls...
r13348 print('Macro `%s` created. To execute, type its name (without quotes).' % name)
print('=== Macro contents: ===')
print(macro, end=' ')
Takeshi Kanmae
Fix a breakpoint bug
r9147
MinRK
add %%capture cell magic
r7325 @magic_arguments.magic_arguments()
MinRK
update capture per review...
r7408 @magic_arguments.argument('output', type=str, default='', nargs='?',
help="""The name of the variable in which to store output.
This is a utils.io.CapturedIO object with stdout/err attributes
for the text of the captured output.
Takeshi Kanmae
Fix a breakpoint bug
r9147
MinRK
update capture per review...
r7408 CapturedOutput also has a show() method for displaying the output,
and __call__ as well, so you can use that to quickly display the
output.
Takeshi Kanmae
Fix a breakpoint bug
r9147
MinRK
update capture per review...
r7408 If unspecified, captured output is discarded.
MinRK
add %%capture cell magic
r7325 """
)
MinRK
update capture per review...
r7408 @magic_arguments.argument('--no-stderr', action="store_true",
help="""Don't capture stderr."""
)
@magic_arguments.argument('--no-stdout', action="store_true",
help="""Don't capture stdout."""
)
Paul Ivanov
add --no-display flag to %%capture...
r12225 @magic_arguments.argument('--no-display', action="store_true",
help="""Don't capture IPython's rich display."""
)
MinRK
add %%capture cell magic
r7325 @cell_magic
def capture(self, line, cell):
Paul Ivanov
add --no-display flag to %%capture...
r12225 """run the cell, capturing stdout, stderr, and IPython's rich display() calls."""
MinRK
add %%capture cell magic
r7325 args = magic_arguments.parse_argstring(self.capture, line)
MinRK
update capture per review...
r7408 out = not args.no_stdout
err = not args.no_stderr
Paul Ivanov
add --no-display flag to %%capture...
r12225 disp = not args.no_display
with capture_output(out, err, disp) as io:
MinRK
add %%capture cell magic
r7325 self.shell.run_cell(cell)
MinRK
update capture per review...
r7408 if args.output:
self.shell.user_ns[args.output] = io
Owen Healy
Allow the %run magic with '-b' to specify a file....
r9052
def parse_breakpoint(text, current_file):
'''Returns (file, line) for file:line and (current_file, line) for line'''
colon = text.find(':')
if colon == -1:
return current_file, int(text)
else:
return text[:colon], int(text[colon+1:])
Jan Schulz
time(it) magic: format timespans up to hours in human readable form...
r9309
def _format_time(timespan, precision=3):
"""Formats the timespan in a human readable form"""
import math
Jan Schulz
time(it) magic: More human readable time format for value >1min...
r9429 if timespan >= 60.0:
# we have more than a minute, format that in a human readable form
# Idea from http://snipplr.com/view/5713/
parts = [("d", 60*60*24),("h", 60*60),("min", 60), ("s", 1)]
time = []
leftover = timespan
for suffix, length in parts:
value = int(leftover / length)
if value > 0:
leftover = leftover % length
time.append(u'%s%s' % (str(value), suffix))
if leftover < 1:
break
return " ".join(time)
Jan Schulz
time(it) magic: reorganize time formatting code...
r9432
Jan Schulz
time(it) magic: format timespans up to hours in human readable form...
r9309
Jan Schulz
time(it) magic: reorganize time formatting code...
r9432 # Unfortunately the unicode 'micro' symbol can cause problems in
# certain terminals.
# See bug: https://bugs.launchpad.net/ipython/+bug/348466
# Try to prevent crashes by being more secure than it needs to
# E.g. eclipse is able to print a ยต, but has no sys.stdout.encoding set.
units = [u"s", u"ms",u'us',"ns"] # the save value
if hasattr(sys.stdout, 'encoding') and sys.stdout.encoding:
try:
u'\xb5'.encode(sys.stdout.encoding)
units = [u"s", u"ms",u'\xb5s',"ns"]
except:
pass
scaling = [1, 1e3, 1e6, 1e9]
Jan Schulz
time(it) magic: More human readable time format for value >1min...
r9429 if timespan > 0.0:
order = min(-int(math.floor(math.log10(timespan)) // 3), 3)
else:
order = 3
Abhinav Upadhyay
Avoid using a temporary variable by returning the value directly.
r12860 return u"%.*g %s" % (precision, timespan * scaling[order], units[order])